data_3I7B # _model_server_result.job_id Xq1JyxNOEq6hSMfdwQebZA _model_server_result.datetime_utc '2024-11-16 00:58:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 3I7B # _exptl.entry_id 3I7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-methylethyl)-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.78 _cell.angle_gamma 90 _cell.entry_id 3I7B _cell.length_a 47.243 _cell.length_b 72.851 _cell.length_c 65.713 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H19 N5' _chem_comp.formula_weight 317.388 _chem_comp.id BK1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-methylethyl)-3-(naphthalen-1-ylmethyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-Amino-1-iso-propyl-3-(1-naphthylmethyl)pyrazolo[3,4-d]pyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 BK1 doub 70 n y C6 N1 BK1 sing 71 n y N3 C2 BK1 sing 72 n y C2 H2 BK1 sing 73 n n C4 N3 BK1 doub 74 n y NAX C4 BK1 sing 75 n y C4 C5 BK1 sing 76 n y CAR C5 BK1 sing 77 n y C5 C6 BK1 doub 78 n y C6 NAC BK1 sing 79 n n CAW CAA BK1 sing 80 n n CAA HAA BK1 sing 81 n n CAA HAAA BK1 sing 82 n n CAA HAAB BK1 sing 83 n n CAB CAW BK1 sing 84 n n CAB HAB BK1 sing 85 n n CAB HABA BK1 sing 86 n n CAB HABB BK1 sing 87 n n NAC HNAC BK1 sing 88 n n NAC HNAA BK1 sing 89 n n CAE CAD BK1 doub 90 n y CAD CAH BK1 sing 91 n y CAD HAD BK1 sing 92 n n CAJ CAE BK1 sing 93 n y CAE HAE BK1 sing 94 n n CAG CAF BK1 sing 95 n y CAF CAI BK1 doub 96 n y CAF HAF BK1 sing 97 n n CAQ CAG BK1 doub 98 n y CAG HAG BK1 sing 99 n n CAS CAH BK1 doub 100 n y CAH HAH BK1 sing 101 n n CAS CAI BK1 sing 102 n y CAI HAI BK1 sing 103 n n CAJ CAT BK1 doub 104 n y CAJ HAJ BK1 sing 105 n n CAR CAL BK1 sing 106 n n CAL CAQ BK1 sing 107 n n CAL HAL BK1 sing 108 n n CAL HALA BK1 sing 109 n n NAX NAO BK1 sing 110 n y NAO CAR BK1 doub 111 n y CAQ CAT BK1 sing 112 n y CAT CAS BK1 sing 113 n y CAW NAX BK1 sing 114 n n CAW HAW BK1 sing 115 n n # _atom_sites.entry_id 3I7B _atom_sites.fract_transf_matrix[1][1] 0.021167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003269 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BK1 A 1 701 701 BK1 BK1 . C 3 EDO A 1 702 702 EDO EDO . D 3 EDO A 1 703 703 EDO EDO . E 3 EDO A 1 704 704 EDO EDO . F 4 DMS A 1 705 705 DMS DMS . G 5 HOH A 1 801 801 HOH HOH . G 5 HOH A 2 802 802 HOH HOH . G 5 HOH A 3 803 803 HOH HOH . G 5 HOH A 4 804 804 HOH HOH . G 5 HOH A 5 805 805 HOH HOH . G 5 HOH A 6 806 806 HOH HOH . G 5 HOH A 7 807 807 HOH HOH . G 5 HOH A 8 808 808 HOH HOH . G 5 HOH A 9 809 809 HOH HOH . G 5 HOH A 10 810 810 HOH HOH . G 5 HOH A 11 811 811 HOH HOH . G 5 HOH A 12 812 812 HOH HOH . G 5 HOH A 13 813 813 HOH HOH . G 5 HOH A 14 814 814 HOH HOH . G 5 HOH A 15 815 815 HOH HOH . G 5 HOH A 16 816 816 HOH HOH . G 5 HOH A 17 817 817 HOH HOH . G 5 HOH A 18 818 818 HOH HOH . G 5 HOH A 19 819 819 HOH HOH . G 5 HOH A 20 820 820 HOH HOH . G 5 HOH A 21 821 821 HOH HOH . G 5 HOH A 22 822 822 HOH HOH . G 5 HOH A 23 823 823 HOH HOH . G 5 HOH A 24 824 824 HOH HOH . G 5 HOH A 25 825 825 HOH HOH . G 5 HOH A 26 826 826 HOH HOH . G 5 HOH A 27 827 827 HOH HOH . G 5 HOH A 28 828 828 HOH HOH . G 5 HOH A 29 829 829 HOH HOH . G 5 HOH A 30 830 830 HOH HOH . G 5 HOH A 31 831 831 HOH HOH . G 5 HOH A 32 832 832 HOH HOH . G 5 HOH A 33 833 833 HOH HOH . G 5 HOH A 34 834 834 HOH HOH . G 5 HOH A 35 835 835 HOH HOH . G 5 HOH A 36 836 836 HOH HOH . G 5 HOH A 37 837 837 HOH HOH . G 5 HOH A 38 838 838 HOH HOH . G 5 HOH A 39 839 839 HOH HOH . G 5 HOH A 40 840 840 HOH HOH . G 5 HOH A 41 841 841 HOH HOH . G 5 HOH A 42 842 842 HOH HOH . G 5 HOH A 43 843 843 HOH HOH . G 5 HOH A 44 844 844 HOH HOH . G 5 HOH A 45 845 845 HOH HOH . G 5 HOH A 46 846 846 HOH HOH . G 5 HOH A 47 847 847 HOH HOH . G 5 HOH A 48 848 848 HOH HOH . G 5 HOH A 49 849 849 HOH HOH . G 5 HOH A 50 850 850 HOH HOH . G 5 HOH A 51 851 851 HOH HOH . G 5 HOH A 52 852 852 HOH HOH . G 5 HOH A 53 853 853 HOH HOH . G 5 HOH A 54 854 854 HOH HOH . G 5 HOH A 55 855 855 HOH HOH . G 5 HOH A 56 856 856 HOH HOH . G 5 HOH A 57 857 857 HOH HOH . G 5 HOH A 58 858 858 HOH HOH . G 5 HOH A 59 859 859 HOH HOH . G 5 HOH A 60 860 860 HOH HOH . G 5 HOH A 61 861 861 HOH HOH . G 5 HOH A 62 862 862 HOH HOH . G 5 HOH A 63 863 863 HOH HOH . G 5 HOH A 64 864 864 HOH HOH . G 5 HOH A 65 865 865 HOH HOH . G 5 HOH A 66 866 866 HOH HOH . G 5 HOH A 67 867 867 HOH HOH . G 5 HOH A 68 868 868 HOH HOH . G 5 HOH A 69 869 869 HOH HOH . G 5 HOH A 70 870 870 HOH HOH . G 5 HOH A 71 871 871 HOH HOH . G 5 HOH A 72 872 872 HOH HOH . G 5 HOH A 73 873 873 HOH HOH . G 5 HOH A 74 874 874 HOH HOH . G 5 HOH A 75 875 875 HOH HOH . G 5 HOH A 76 876 876 HOH HOH . G 5 HOH A 77 877 877 HOH HOH . G 5 HOH A 78 878 878 HOH HOH . G 5 HOH A 79 879 879 HOH HOH . G 5 HOH A 80 880 880 HOH HOH . G 5 HOH A 81 881 881 HOH HOH . G 5 HOH A 82 882 882 HOH HOH . G 5 HOH A 83 883 883 HOH HOH . G 5 HOH A 84 884 884 HOH HOH . G 5 HOH A 85 885 885 HOH HOH . G 5 HOH A 86 886 886 HOH HOH . G 5 HOH A 87 887 887 HOH HOH . G 5 HOH A 88 888 888 HOH HOH . G 5 HOH A 89 889 889 HOH HOH . G 5 HOH A 90 890 890 HOH HOH . G 5 HOH A 91 891 891 HOH HOH . G 5 HOH A 92 892 892 HOH HOH . G 5 HOH A 93 893 893 HOH HOH . G 5 HOH A 94 894 894 HOH HOH . G 5 HOH A 95 895 895 HOH HOH . G 5 HOH A 96 896 896 HOH HOH . G 5 HOH A 97 897 897 HOH HOH . G 5 HOH A 98 898 898 HOH HOH . G 5 HOH A 99 899 899 HOH HOH . G 5 HOH A 100 900 900 HOH HOH . G 5 HOH A 101 901 901 HOH HOH . G 5 HOH A 102 902 902 HOH HOH . G 5 HOH A 103 903 903 HOH HOH . G 5 HOH A 104 904 904 HOH HOH . G 5 HOH A 105 905 905 HOH HOH . G 5 HOH A 106 906 906 HOH HOH . G 5 HOH A 107 907 907 HOH HOH . G 5 HOH A 108 908 908 HOH HOH . G 5 HOH A 109 909 909 HOH HOH . G 5 HOH A 110 910 910 HOH HOH . G 5 HOH A 111 911 911 HOH HOH . G 5 HOH A 112 912 912 HOH HOH . G 5 HOH A 113 913 913 HOH HOH . G 5 HOH A 114 914 914 HOH HOH . G 5 HOH A 115 915 915 HOH HOH . G 5 HOH A 116 916 916 HOH HOH . G 5 HOH A 117 917 917 HOH HOH . G 5 HOH A 118 918 918 HOH HOH . G 5 HOH A 119 919 919 HOH HOH . G 5 HOH A 120 920 920 HOH HOH . G 5 HOH A 121 921 921 HOH HOH . G 5 HOH A 122 922 922 HOH HOH . G 5 HOH A 123 923 923 HOH HOH . G 5 HOH A 124 924 924 HOH HOH . G 5 HOH A 125 925 925 HOH HOH . G 5 HOH A 126 926 926 HOH HOH . G 5 HOH A 127 927 927 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BK1 . . . B 2 21.888 12.489 63.514 1 35.42 ? N1 BK1 701 A 1 HETATM 2 C C2 BK1 . . . B 2 23.059 13.111 63.427 1 37 ? C2 BK1 701 A 1 HETATM 3 N N3 BK1 . . . B 2 23.144 14.429 63.312 1 36.81 ? N3 BK1 701 A 1 HETATM 4 C C4 BK1 . . . B 2 22.027 15.176 63.272 1 35.41 ? C4 BK1 701 A 1 HETATM 5 C C5 BK1 . . . B 2 20.786 14.574 63.354 1 34.5 ? C5 BK1 701 A 1 HETATM 6 C C6 BK1 . . . B 2 20.733 13.178 63.483 1 33.54 ? C6 BK1 701 A 1 HETATM 7 C CAA BK1 . . . B 2 22.517 18.808 63.677 1 38.12 ? CAA BK1 701 A 1 HETATM 8 C CAB BK1 . . . B 2 23.256 17.637 61.563 1 40.75 ? CAB BK1 701 A 1 HETATM 9 N NAC BK1 . . . B 2 19.587 12.505 63.573 1 32.63 ? NAC BK1 701 A 1 HETATM 10 C CAD BK1 . . . B 2 13.547 15.726 65.241 1 35.4 ? CAD BK1 701 A 1 HETATM 11 C CAE BK1 . . . B 2 14.125 16.049 64.017 1 34.91 ? CAE BK1 701 A 1 HETATM 12 C CAF BK1 . . . B 2 17.873 14.499 66.956 1 33.92 ? CAF BK1 701 A 1 HETATM 13 C CAG BK1 . . . B 2 18.455 14.82 65.729 1 36.23 ? CAG BK1 701 A 1 HETATM 14 C CAH BK1 . . . B 2 14.347 15.255 66.278 1 35.3 ? CAH BK1 701 A 1 HETATM 15 C CAI BK1 . . . B 2 16.506 14.638 67.141 1 34.63 ? CAI BK1 701 A 1 HETATM 16 C CAJ BK1 . . . B 2 15.497 15.907 63.829 1 35.45 ? CAJ BK1 701 A 1 HETATM 17 C CAL BK1 . . . B 2 18.35 15.631 63.322 1 34.67 ? CAL BK1 701 A 1 HETATM 18 N NAO BK1 . . . B 2 20.611 16.754 63.176 1 39.22 ? NAO BK1 701 A 1 HETATM 19 C CAQ BK1 . . . B 2 17.684 15.295 64.664 1 35.26 ? CAQ BK1 701 A 1 HETATM 20 C CAR BK1 . . . B 2 19.885 15.639 63.297 1 37.4 ? CAR BK1 701 A 1 HETATM 21 C CAS BK1 . . . B 2 15.72 15.109 66.091 1 35.01 ? CAS BK1 701 A 1 HETATM 22 C CAT BK1 . . . B 2 16.306 15.434 64.864 1 35.1 ? CAT BK1 701 A 1 HETATM 23 C CAW BK1 . . . B 2 22.903 17.467 63.045 1 39.29 ? CAW BK1 701 A 1 HETATM 24 N NAX BK1 . . . B 2 21.814 16.48 63.166 1 37.35 ? NAX BK1 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #