data_3I7S # _model_server_result.job_id rRw7n3QPV-8opdbbuceRUg _model_server_result.datetime_utc '2024-11-12 20:46:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":294}' # _entry.id 3I7S # _exptl.entry_id 3I7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I7S _cell.length_a 120.881 _cell.length_b 120.881 _cell.length_c 110.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 K N N ? 2 L N N ? 2 O N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 48 A SER 48 1_555 F K K . A K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc2 A O ALA 49 A ALA 49 1_555 F K K . A K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc3 A O LEU 51 A LEU 51 1_555 F K K . A K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc4 A O ALA 152 A ALA 152 1_555 E K K . A K 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc5 A O VAL 154 A VAL 154 1_555 E K K . A K 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc6 A O LYS 155 A LYS 155 1_555 E K K . A K 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.241 ? metalc ? metalc7 A O ILE 157 A ILE 157 1_555 E K K . A K 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc8 F K K . A K 296 1_555 G O3 GOL . A GOL 297 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.86 ? metalc ? metalc9 F K K . A K 296 1_555 G O3 GOL . A GOL 297 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.002 ? metalc ? metalc10 F K K . A K 296 1_555 V O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc11 F K K . A K 296 1_555 V O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc12 V O HOH . A HOH 301 1_555 N K K . B K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc13 B O SER 48 B SER 48 1_555 N K K . B K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc14 B O ALA 49 B ALA 49 1_555 N K K . B K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc15 B O LEU 51 B LEU 51 1_555 N K K . B K 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc16 B OE1 GLU 84 B GLU 84 1_555 P K K . B K 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.206 ? metalc ? metalc17 B O ALA 152 B ALA 152 1_555 Q K K . B K 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc18 B O VAL 154 B VAL 154 1_555 Q K K . B K 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc19 B O LYS 155 B LYS 155 1_555 Q K K . B K 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.371 ? metalc ? metalc20 B O ILE 157 B ILE 157 1_555 Q K K . B K 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc21 N K K . B K 296 1_555 W O HOH . B HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I7S _atom_sites.fract_transf_matrix[1][1] 0.008273 _atom_sites.fract_transf_matrix[1][2] 0.004776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 293 1 GOL GOL . D 2 GOL A 1 294 1 GOL GOL . E 3 K A 1 295 1 K K . F 3 K A 1 296 3 K K . G 2 GOL A 1 297 1 GOL GOL . H 4 PYR A 1 298 1 PYR PYR . I 5 PO4 A 1 299 1 PO4 PO4 . J 5 PO4 A 1 300 2 PO4 PO4 . K 2 GOL B 1 293 1 GOL GOL . L 2 GOL B 1 294 1 GOL GOL . M 3 K B 1 295 2 K K . N 3 K B 1 296 4 K K . O 2 GOL B 1 297 1 GOL GOL . P 3 K B 1 298 1 K K . Q 3 K B 1 299 2 K K . R 2 GOL B 1 300 1 GOL GOL . S 2 GOL B 1 301 2 GOL GOL . T 4 PYR B 1 302 2 PYR PYR . U 5 PO4 B 1 303 3 PO4 PO4 . V 6 HOH A 1 301 44 HOH HOH . V 6 HOH A 2 302 45 HOH HOH . V 6 HOH A 3 303 57 HOH HOH . V 6 HOH A 4 304 60 HOH HOH . V 6 HOH A 5 305 63 HOH HOH . V 6 HOH A 6 306 64 HOH HOH . V 6 HOH A 7 307 66 HOH HOH . V 6 HOH A 8 308 67 HOH HOH . V 6 HOH A 9 309 68 HOH HOH . V 6 HOH A 10 310 72 HOH HOH . V 6 HOH A 11 311 73 HOH HOH . V 6 HOH A 12 312 74 HOH HOH . V 6 HOH A 13 313 75 HOH HOH . V 6 HOH A 14 314 76 HOH HOH . V 6 HOH A 15 315 77 HOH HOH . V 6 HOH A 16 316 78 HOH HOH . V 6 HOH A 17 317 79 HOH HOH . V 6 HOH A 18 318 81 HOH HOH . V 6 HOH A 19 319 82 HOH HOH . V 6 HOH A 20 320 83 HOH HOH . V 6 HOH A 21 321 89 HOH HOH . V 6 HOH A 22 322 90 HOH HOH . V 6 HOH A 23 323 93 HOH HOH . V 6 HOH A 24 324 96 HOH HOH . V 6 HOH A 25 325 97 HOH HOH . V 6 HOH A 26 326 99 HOH HOH . V 6 HOH A 27 327 103 HOH HOH . V 6 HOH A 28 328 105 HOH HOH . V 6 HOH A 29 329 107 HOH HOH . V 6 HOH A 30 330 112 HOH HOH . V 6 HOH A 31 331 116 HOH HOH . V 6 HOH A 32 332 119 HOH HOH . V 6 HOH A 33 333 122 HOH HOH . V 6 HOH A 34 334 123 HOH HOH . V 6 HOH A 35 335 137 HOH HOH . V 6 HOH A 36 336 139 HOH HOH . V 6 HOH A 37 337 141 HOH HOH . V 6 HOH A 38 338 142 HOH HOH . V 6 HOH A 39 339 143 HOH HOH . V 6 HOH A 40 340 144 HOH HOH . V 6 HOH A 41 341 146 HOH HOH . V 6 HOH A 42 342 152 HOH HOH . V 6 HOH A 43 343 156 HOH HOH . V 6 HOH A 44 344 158 HOH HOH . V 6 HOH A 45 345 161 HOH HOH . V 6 HOH A 46 346 165 HOH HOH . V 6 HOH A 47 347 166 HOH HOH . V 6 HOH A 48 348 174 HOH HOH . V 6 HOH A 49 349 184 HOH HOH . V 6 HOH A 50 350 185 HOH HOH . V 6 HOH A 51 351 186 HOH HOH . V 6 HOH A 52 352 187 HOH HOH . V 6 HOH A 53 353 188 HOH HOH . V 6 HOH A 54 354 189 HOH HOH . V 6 HOH A 55 355 190 HOH HOH . V 6 HOH A 56 356 191 HOH HOH . V 6 HOH A 57 357 192 HOH HOH . V 6 HOH A 58 358 196 HOH HOH . V 6 HOH A 59 359 197 HOH HOH . V 6 HOH A 60 360 198 HOH HOH . V 6 HOH A 61 361 199 HOH HOH . V 6 HOH A 62 362 200 HOH HOH . V 6 HOH A 63 363 204 HOH HOH . V 6 HOH A 64 364 206 HOH HOH . V 6 HOH A 65 365 207 HOH HOH . V 6 HOH A 66 366 208 HOH HOH . V 6 HOH A 67 367 209 HOH HOH . V 6 HOH A 68 368 212 HOH HOH . V 6 HOH A 69 369 217 HOH HOH . V 6 HOH A 70 370 220 HOH HOH . W 6 HOH B 1 304 47 HOH HOH . W 6 HOH B 2 305 48 HOH HOH . W 6 HOH B 3 306 49 HOH HOH . W 6 HOH B 4 307 50 HOH HOH . W 6 HOH B 5 308 51 HOH HOH . W 6 HOH B 6 309 52 HOH HOH . W 6 HOH B 7 310 53 HOH HOH . W 6 HOH B 8 311 54 HOH HOH . W 6 HOH B 9 312 55 HOH HOH . W 6 HOH B 10 313 56 HOH HOH . W 6 HOH B 11 314 58 HOH HOH . W 6 HOH B 12 315 59 HOH HOH . W 6 HOH B 13 316 61 HOH HOH . W 6 HOH B 14 317 62 HOH HOH . W 6 HOH B 15 318 65 HOH HOH . W 6 HOH B 16 319 69 HOH HOH . W 6 HOH B 17 320 70 HOH HOH . W 6 HOH B 18 321 71 HOH HOH . W 6 HOH B 19 322 80 HOH HOH . W 6 HOH B 20 323 84 HOH HOH . W 6 HOH B 21 324 85 HOH HOH . W 6 HOH B 22 325 86 HOH HOH . W 6 HOH B 23 326 87 HOH HOH . W 6 HOH B 24 327 88 HOH HOH . W 6 HOH B 25 328 91 HOH HOH . W 6 HOH B 26 329 92 HOH HOH . W 6 HOH B 27 330 94 HOH HOH . W 6 HOH B 28 331 95 HOH HOH . W 6 HOH B 29 332 98 HOH HOH . W 6 HOH B 30 333 100 HOH HOH . W 6 HOH B 31 334 101 HOH HOH . W 6 HOH B 32 335 102 HOH HOH . W 6 HOH B 33 336 104 HOH HOH . W 6 HOH B 34 337 106 HOH HOH . W 6 HOH B 35 338 108 HOH HOH . W 6 HOH B 36 339 110 HOH HOH . W 6 HOH B 37 340 111 HOH HOH . W 6 HOH B 38 341 113 HOH HOH . W 6 HOH B 39 342 114 HOH HOH . W 6 HOH B 40 343 115 HOH HOH . W 6 HOH B 41 344 117 HOH HOH . W 6 HOH B 42 345 118 HOH HOH . W 6 HOH B 43 346 120 HOH HOH . W 6 HOH B 44 347 121 HOH HOH . W 6 HOH B 45 348 124 HOH HOH . W 6 HOH B 46 349 125 HOH HOH . W 6 HOH B 47 350 126 HOH HOH . W 6 HOH B 48 351 127 HOH HOH . W 6 HOH B 49 352 129 HOH HOH . W 6 HOH B 50 353 130 HOH HOH . W 6 HOH B 51 354 131 HOH HOH . W 6 HOH B 52 355 132 HOH HOH . W 6 HOH B 53 356 133 HOH HOH . W 6 HOH B 54 357 134 HOH HOH . W 6 HOH B 55 358 135 HOH HOH . W 6 HOH B 56 359 136 HOH HOH . W 6 HOH B 57 360 138 HOH HOH . W 6 HOH B 58 361 145 HOH HOH . W 6 HOH B 59 362 147 HOH HOH . W 6 HOH B 60 363 150 HOH HOH . W 6 HOH B 61 364 153 HOH HOH . W 6 HOH B 62 365 155 HOH HOH . W 6 HOH B 63 366 157 HOH HOH . W 6 HOH B 64 367 159 HOH HOH . W 6 HOH B 65 368 162 HOH HOH . W 6 HOH B 66 369 163 HOH HOH . W 6 HOH B 67 370 164 HOH HOH . W 6 HOH B 68 371 167 HOH HOH . W 6 HOH B 69 372 168 HOH HOH . W 6 HOH B 70 373 169 HOH HOH . W 6 HOH B 71 374 170 HOH HOH . W 6 HOH B 72 375 171 HOH HOH . W 6 HOH B 73 376 172 HOH HOH . W 6 HOH B 74 377 173 HOH HOH . W 6 HOH B 75 378 175 HOH HOH . W 6 HOH B 76 379 176 HOH HOH . W 6 HOH B 77 380 177 HOH HOH . W 6 HOH B 78 381 178 HOH HOH . W 6 HOH B 79 382 179 HOH HOH . W 6 HOH B 80 383 180 HOH HOH . W 6 HOH B 81 384 181 HOH HOH . W 6 HOH B 82 385 182 HOH HOH . W 6 HOH B 83 386 183 HOH HOH . W 6 HOH B 84 387 193 HOH HOH . W 6 HOH B 85 388 194 HOH HOH . W 6 HOH B 86 389 195 HOH HOH . W 6 HOH B 87 390 201 HOH HOH . W 6 HOH B 88 391 202 HOH HOH . W 6 HOH B 89 392 203 HOH HOH . W 6 HOH B 90 393 205 HOH HOH . W 6 HOH B 91 394 210 HOH HOH . W 6 HOH B 92 395 211 HOH HOH . W 6 HOH B 93 396 213 HOH HOH . W 6 HOH B 94 397 214 HOH HOH . W 6 HOH B 95 398 215 HOH HOH . W 6 HOH B 96 399 216 HOH HOH . W 6 HOH B 97 400 218 HOH HOH . W 6 HOH B 98 401 219 HOH HOH . W 6 HOH B 99 402 221 HOH HOH . W 6 HOH B 100 403 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 7.566 81.474 6.647 1 60.96 ? C1 GOL 294 B 1 HETATM 2 O O1 GOL . . . L 2 8.057 80.431 7.466 1 61.04 ? O1 GOL 294 B 1 HETATM 3 C C2 GOL . . . L 2 7.887 81.229 5.175 1 60.3 ? C2 GOL 294 B 1 HETATM 4 O O2 GOL . . . L 2 8.718 80.098 5.053 1 59.07 ? O2 GOL 294 B 1 HETATM 5 C C3 GOL . . . L 2 8.565 82.458 4.565 1 60.6 ? C3 GOL 294 B 1 HETATM 6 O O3 GOL . . . L 2 8.018 82.722 3.292 1 59.44 ? O3 GOL 294 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #