data_3I80 # _model_server_result.job_id dAZWeVA6TAxukLItugTPOA _model_server_result.datetime_utc '2024-11-23 02:21:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":326}' # _entry.id 3I80 # _exptl.entry_id 3I80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I80 _cell.length_a 87.84 _cell.length_b 87.84 _cell.length_c 103.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I80 _atom_sites.fract_transf_matrix[1][1] 0.011384 _atom_sites.fract_transf_matrix[1][2] 0.006573 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VO4 A 1 322 1 VO4 VO4 . C 3 TRS A 1 323 2 TRS TRS . D 4 GOL A 1 324 3 GOL GOL . E 4 GOL A 1 325 4 GOL GOL . F 4 GOL A 1 326 5 GOL GOL . G 5 HOH A 1 327 1 HOH HOH . G 5 HOH A 2 328 2 HOH HOH . G 5 HOH A 3 329 3 HOH HOH . G 5 HOH A 4 330 4 HOH HOH . G 5 HOH A 5 331 5 HOH HOH . G 5 HOH A 6 332 6 HOH HOH . G 5 HOH A 7 333 7 HOH HOH . G 5 HOH A 8 334 8 HOH HOH . G 5 HOH A 9 335 9 HOH HOH . G 5 HOH A 10 336 10 HOH HOH . G 5 HOH A 11 337 11 HOH HOH . G 5 HOH A 12 338 12 HOH HOH . G 5 HOH A 13 339 13 HOH HOH . G 5 HOH A 14 340 14 HOH HOH . G 5 HOH A 15 341 15 HOH HOH . G 5 HOH A 16 342 16 HOH HOH . G 5 HOH A 17 343 17 HOH HOH . G 5 HOH A 18 344 18 HOH HOH . G 5 HOH A 19 345 19 HOH HOH . G 5 HOH A 20 346 20 HOH HOH . G 5 HOH A 21 347 21 HOH HOH . G 5 HOH A 22 348 22 HOH HOH . G 5 HOH A 23 349 23 HOH HOH . G 5 HOH A 24 350 24 HOH HOH . G 5 HOH A 25 351 25 HOH HOH . G 5 HOH A 26 352 26 HOH HOH . G 5 HOH A 27 353 27 HOH HOH . G 5 HOH A 28 354 28 HOH HOH . G 5 HOH A 29 355 29 HOH HOH . G 5 HOH A 30 356 30 HOH HOH . G 5 HOH A 31 357 31 HOH HOH . G 5 HOH A 32 358 32 HOH HOH . G 5 HOH A 33 359 33 HOH HOH . G 5 HOH A 34 360 34 HOH HOH . G 5 HOH A 35 361 35 HOH HOH . G 5 HOH A 36 362 36 HOH HOH . G 5 HOH A 37 363 37 HOH HOH . G 5 HOH A 38 364 38 HOH HOH . G 5 HOH A 39 365 39 HOH HOH . G 5 HOH A 40 366 40 HOH HOH . G 5 HOH A 41 367 41 HOH HOH . G 5 HOH A 42 368 42 HOH HOH . G 5 HOH A 43 369 43 HOH HOH . G 5 HOH A 44 370 44 HOH HOH . G 5 HOH A 45 371 45 HOH HOH . G 5 HOH A 46 372 46 HOH HOH . G 5 HOH A 47 373 47 HOH HOH . G 5 HOH A 48 374 48 HOH HOH . G 5 HOH A 49 375 49 HOH HOH . G 5 HOH A 50 376 50 HOH HOH . G 5 HOH A 51 377 51 HOH HOH . G 5 HOH A 52 378 52 HOH HOH . G 5 HOH A 53 379 53 HOH HOH . G 5 HOH A 54 380 54 HOH HOH . G 5 HOH A 55 381 55 HOH HOH . G 5 HOH A 56 382 56 HOH HOH . G 5 HOH A 57 383 57 HOH HOH . G 5 HOH A 58 384 58 HOH HOH . G 5 HOH A 59 385 59 HOH HOH . G 5 HOH A 60 386 60 HOH HOH . G 5 HOH A 61 387 61 HOH HOH . G 5 HOH A 62 388 62 HOH HOH . G 5 HOH A 63 389 63 HOH HOH . G 5 HOH A 64 390 64 HOH HOH . G 5 HOH A 65 391 65 HOH HOH . G 5 HOH A 66 392 66 HOH HOH . G 5 HOH A 67 393 67 HOH HOH . G 5 HOH A 68 394 68 HOH HOH . G 5 HOH A 69 395 69 HOH HOH . G 5 HOH A 70 396 70 HOH HOH . G 5 HOH A 71 397 71 HOH HOH . G 5 HOH A 72 398 72 HOH HOH . G 5 HOH A 73 399 73 HOH HOH . G 5 HOH A 74 400 74 HOH HOH . G 5 HOH A 75 401 75 HOH HOH . G 5 HOH A 76 402 76 HOH HOH . G 5 HOH A 77 403 77 HOH HOH . G 5 HOH A 78 404 78 HOH HOH . G 5 HOH A 79 405 79 HOH HOH . G 5 HOH A 80 406 80 HOH HOH . G 5 HOH A 81 407 81 HOH HOH . G 5 HOH A 82 408 82 HOH HOH . G 5 HOH A 83 409 83 HOH HOH . G 5 HOH A 84 410 84 HOH HOH . G 5 HOH A 85 411 85 HOH HOH . G 5 HOH A 86 412 86 HOH HOH . G 5 HOH A 87 413 87 HOH HOH . G 5 HOH A 88 414 88 HOH HOH . G 5 HOH A 89 415 89 HOH HOH . G 5 HOH A 90 416 90 HOH HOH . G 5 HOH A 91 417 91 HOH HOH . G 5 HOH A 92 418 92 HOH HOH . G 5 HOH A 93 419 93 HOH HOH . G 5 HOH A 94 420 94 HOH HOH . G 5 HOH A 95 421 95 HOH HOH . G 5 HOH A 96 422 96 HOH HOH . G 5 HOH A 97 423 97 HOH HOH . G 5 HOH A 98 424 98 HOH HOH . G 5 HOH A 99 425 99 HOH HOH . G 5 HOH A 100 426 100 HOH HOH . G 5 HOH A 101 427 101 HOH HOH . G 5 HOH A 102 428 102 HOH HOH . G 5 HOH A 103 429 103 HOH HOH . G 5 HOH A 104 430 104 HOH HOH . G 5 HOH A 105 431 105 HOH HOH . G 5 HOH A 106 432 106 HOH HOH . G 5 HOH A 107 433 107 HOH HOH . G 5 HOH A 108 434 108 HOH HOH . G 5 HOH A 109 435 109 HOH HOH . G 5 HOH A 110 436 110 HOH HOH . G 5 HOH A 111 437 111 HOH HOH . G 5 HOH A 112 438 112 HOH HOH . G 5 HOH A 113 439 113 HOH HOH . G 5 HOH A 114 440 114 HOH HOH . G 5 HOH A 115 441 115 HOH HOH . G 5 HOH A 116 442 116 HOH HOH . G 5 HOH A 117 443 117 HOH HOH . G 5 HOH A 118 444 118 HOH HOH . G 5 HOH A 119 445 119 HOH HOH . G 5 HOH A 120 446 120 HOH HOH . G 5 HOH A 121 447 121 HOH HOH . G 5 HOH A 122 448 122 HOH HOH . G 5 HOH A 123 449 123 HOH HOH . G 5 HOH A 124 450 124 HOH HOH . G 5 HOH A 125 451 125 HOH HOH . G 5 HOH A 126 452 126 HOH HOH . G 5 HOH A 127 453 127 HOH HOH . G 5 HOH A 128 454 128 HOH HOH . G 5 HOH A 129 455 129 HOH HOH . G 5 HOH A 130 456 130 HOH HOH . G 5 HOH A 131 457 131 HOH HOH . G 5 HOH A 132 458 132 HOH HOH . G 5 HOH A 133 459 133 HOH HOH . G 5 HOH A 134 460 134 HOH HOH . G 5 HOH A 135 461 135 HOH HOH . G 5 HOH A 136 462 136 HOH HOH . G 5 HOH A 137 463 137 HOH HOH . G 5 HOH A 138 464 138 HOH HOH . G 5 HOH A 139 465 139 HOH HOH . G 5 HOH A 140 466 140 HOH HOH . G 5 HOH A 141 467 141 HOH HOH . G 5 HOH A 142 468 142 HOH HOH . G 5 HOH A 143 469 143 HOH HOH . G 5 HOH A 144 470 144 HOH HOH . G 5 HOH A 145 471 145 HOH HOH . G 5 HOH A 146 472 146 HOH HOH . G 5 HOH A 147 473 147 HOH HOH . G 5 HOH A 148 474 148 HOH HOH . G 5 HOH A 149 475 149 HOH HOH . G 5 HOH A 150 476 150 HOH HOH . G 5 HOH A 151 477 151 HOH HOH . G 5 HOH A 152 478 152 HOH HOH . G 5 HOH A 153 479 153 HOH HOH . G 5 HOH A 154 480 154 HOH HOH . G 5 HOH A 155 481 155 HOH HOH . G 5 HOH A 156 482 156 HOH HOH . G 5 HOH A 157 483 157 HOH HOH . G 5 HOH A 158 484 158 HOH HOH . G 5 HOH A 159 485 159 HOH HOH . G 5 HOH A 160 486 160 HOH HOH . G 5 HOH A 161 487 161 HOH HOH . G 5 HOH A 162 488 162 HOH HOH . G 5 HOH A 163 489 163 HOH HOH . G 5 HOH A 164 490 164 HOH HOH . G 5 HOH A 165 491 165 HOH HOH . G 5 HOH A 166 492 166 HOH HOH . G 5 HOH A 167 493 167 HOH HOH . G 5 HOH A 168 494 168 HOH HOH . G 5 HOH A 169 495 169 HOH HOH . G 5 HOH A 170 496 170 HOH HOH . G 5 HOH A 171 497 171 HOH HOH . G 5 HOH A 172 498 172 HOH HOH . G 5 HOH A 173 499 173 HOH HOH . G 5 HOH A 174 500 174 HOH HOH . G 5 HOH A 175 501 175 HOH HOH . G 5 HOH A 176 502 176 HOH HOH . G 5 HOH A 177 503 177 HOH HOH . G 5 HOH A 178 504 178 HOH HOH . G 5 HOH A 179 505 179 HOH HOH . G 5 HOH A 180 506 180 HOH HOH . G 5 HOH A 181 507 181 HOH HOH . G 5 HOH A 182 508 182 HOH HOH . G 5 HOH A 183 509 183 HOH HOH . G 5 HOH A 184 510 184 HOH HOH . G 5 HOH A 185 511 185 HOH HOH . G 5 HOH A 186 512 186 HOH HOH . G 5 HOH A 187 513 187 HOH HOH . G 5 HOH A 188 514 188 HOH HOH . G 5 HOH A 189 515 189 HOH HOH . G 5 HOH A 190 516 190 HOH HOH . G 5 HOH A 191 517 191 HOH HOH . G 5 HOH A 192 518 192 HOH HOH . G 5 HOH A 193 519 193 HOH HOH . G 5 HOH A 194 520 194 HOH HOH . G 5 HOH A 195 521 195 HOH HOH . G 5 HOH A 196 522 196 HOH HOH . G 5 HOH A 197 523 197 HOH HOH . G 5 HOH A 198 524 198 HOH HOH . G 5 HOH A 199 525 199 HOH HOH . G 5 HOH A 200 526 200 HOH HOH . G 5 HOH A 201 527 201 HOH HOH . G 5 HOH A 202 528 202 HOH HOH . G 5 HOH A 203 529 203 HOH HOH . G 5 HOH A 204 530 204 HOH HOH . G 5 HOH A 205 531 205 HOH HOH . G 5 HOH A 206 532 206 HOH HOH . G 5 HOH A 207 533 207 HOH HOH . G 5 HOH A 208 534 208 HOH HOH . G 5 HOH A 209 535 209 HOH HOH . G 5 HOH A 210 536 210 HOH HOH . G 5 HOH A 211 537 211 HOH HOH . G 5 HOH A 212 538 212 HOH HOH . G 5 HOH A 213 539 213 HOH HOH . G 5 HOH A 214 540 214 HOH HOH . G 5 HOH A 215 541 215 HOH HOH . G 5 HOH A 216 542 216 HOH HOH . G 5 HOH A 217 543 217 HOH HOH . G 5 HOH A 218 544 218 HOH HOH . G 5 HOH A 219 545 219 HOH HOH . G 5 HOH A 220 546 220 HOH HOH . G 5 HOH A 221 547 221 HOH HOH . G 5 HOH A 222 548 222 HOH HOH . G 5 HOH A 223 549 223 HOH HOH . G 5 HOH A 224 550 224 HOH HOH . G 5 HOH A 225 551 225 HOH HOH . G 5 HOH A 226 552 226 HOH HOH . G 5 HOH A 227 553 227 HOH HOH . G 5 HOH A 228 554 228 HOH HOH . G 5 HOH A 229 555 229 HOH HOH . G 5 HOH A 230 556 230 HOH HOH . G 5 HOH A 231 557 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 33.029 -30.942 -1.184 1 63.96 ? C1 GOL 326 A 1 HETATM 2 O O1 GOL . . . F 4 33.089 -29.981 -2.212 1 64.64 ? O1 GOL 326 A 1 HETATM 3 C C2 GOL . . . F 4 31.578 -31.089 -0.759 1 68.16 ? C2 GOL 326 A 1 HETATM 4 O O2 GOL . . . F 4 31.238 -30.065 0.144 1 75.65 ? O2 GOL 326 A 1 HETATM 5 C C3 GOL . . . F 4 31.372 -32.424 -0.069 1 64.04 ? C3 GOL 326 A 1 HETATM 6 O O3 GOL . . . F 4 30.105 -32.379 0.542 1 77.33 ? O3 GOL 326 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #