data_3I8A # _model_server_result.job_id lXwjgUIsTV7R6BaTSDqufw _model_server_result.datetime_utc '2024-11-27 17:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":219}' # _entry.id 3I8A # _exptl.entry_id 3I8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I8A _cell.length_a 79.164 _cell.length_b 79.164 _cell.length_c 108.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N4 O2' _chem_comp.formula_weight 312.366 _chem_comp.id N22 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 N22 sing 224 n n C7 C5 N22 sing 225 n n C5 N4 N22 doub 226 n y C5 C6 N22 sing 227 n y N4 C3 N22 sing 228 n y C3 N8 N22 sing 229 n n C3 N2 N22 doub 230 n y N2 C1 N22 sing 231 n y C1 N7 N22 sing 232 n n C1 C6 N22 doub 233 n y C6 C9 N22 sing 234 n n C9 C10 N22 trip 235 n n C10 C11 N22 sing 236 n n C11 C13 N22 sing 237 n n C13 C18 N22 doub 238 n y C13 C14 N22 sing 239 n y C18 C17 N22 sing 240 n y C17 O2 N22 sing 241 n n C17 C16 N22 doub 242 n y O2 C4 N22 sing 243 n n C16 C15 N22 sing 244 n y C15 C14 N22 doub 245 n y C14 O10 N22 sing 246 n n O10 C2 N22 sing 247 n n C8 H8 N22 sing 248 n n C8 H8A N22 sing 249 n n C8 H8B N22 sing 250 n n C7 H7 N22 sing 251 n n C7 H7A N22 sing 252 n n N8 HN8 N22 sing 253 n n N8 HN8A N22 sing 254 n n N7 HN7 N22 sing 255 n n N7 HN7A N22 sing 256 n n C11 H11 N22 sing 257 n n C11 H11A N22 sing 258 n n C18 H18 N22 sing 259 n n C4 H4 N22 sing 260 n n C4 H4A N22 sing 261 n n C4 H4B N22 sing 262 n n C16 H16 N22 sing 263 n n C15 H15 N22 sing 264 n n C2 H2 N22 sing 265 n n C2 H2A N22 sing 266 n n C2 H2B N22 sing 267 n n # _atom_sites.entry_id 3I8A _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N22 X 1 219 219 N22 N22 . C 3 NDP X 1 207 207 NDP NAP . D 4 HOH X 1 158 1 HOH HOH . D 4 HOH X 2 159 2 HOH HOH . D 4 HOH X 3 160 3 HOH HOH . D 4 HOH X 4 161 4 HOH HOH . D 4 HOH X 5 162 5 HOH HOH . D 4 HOH X 6 163 7 HOH HOH . D 4 HOH X 7 164 8 HOH HOH . D 4 HOH X 8 165 9 HOH HOH . D 4 HOH X 9 166 10 HOH HOH . D 4 HOH X 10 167 11 HOH HOH . D 4 HOH X 11 168 12 HOH HOH . D 4 HOH X 12 169 13 HOH HOH . D 4 HOH X 13 170 14 HOH HOH . D 4 HOH X 14 171 15 HOH HOH . D 4 HOH X 15 172 16 HOH HOH . D 4 HOH X 16 173 17 HOH HOH . D 4 HOH X 17 174 18 HOH HOH . D 4 HOH X 18 175 19 HOH HOH . D 4 HOH X 19 176 20 HOH HOH . D 4 HOH X 20 177 21 HOH HOH . D 4 HOH X 21 178 22 HOH HOH . D 4 HOH X 22 179 23 HOH HOH . D 4 HOH X 23 180 24 HOH HOH . D 4 HOH X 24 181 25 HOH HOH . D 4 HOH X 25 182 26 HOH HOH . D 4 HOH X 26 183 27 HOH HOH . D 4 HOH X 27 184 29 HOH HOH . D 4 HOH X 28 185 30 HOH HOH . D 4 HOH X 29 186 31 HOH HOH . D 4 HOH X 30 187 32 HOH HOH . D 4 HOH X 31 188 33 HOH HOH . D 4 HOH X 32 189 34 HOH HOH . D 4 HOH X 33 190 35 HOH HOH . D 4 HOH X 34 191 36 HOH HOH . D 4 HOH X 35 192 37 HOH HOH . D 4 HOH X 36 193 38 HOH HOH . D 4 HOH X 37 194 39 HOH HOH . D 4 HOH X 38 195 40 HOH HOH . D 4 HOH X 39 196 42 HOH HOH . D 4 HOH X 40 197 43 HOH HOH . D 4 HOH X 41 198 44 HOH HOH . D 4 HOH X 42 199 46 HOH HOH . D 4 HOH X 43 200 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 N22 . . . B 2 -30.68 -8.756 42.454 1 11.92 ? C8 N22 219 X 1 HETATM 2 C C7 N22 . . . B 2 -29.355 -9.159 43.094 1 10.78 ? C7 N22 219 X 1 HETATM 3 C C5 N22 . . . B 2 -28.307 -9.183 41.999 1 10.8 ? C5 N22 219 X 1 HETATM 4 N N4 N22 . . . B 2 -27.793 -8.006 41.601 1 10.02 ? N4 N22 219 X 1 HETATM 5 C C3 N22 . . . B 2 -26.874 -7.95 40.624 1 9.75 ? C3 N22 219 X 1 HETATM 6 N N8 N22 . . . B 2 -26.376 -6.776 40.247 1 9.62 ? N8 N22 219 X 1 HETATM 7 N N2 N22 . . . B 2 -26.447 -9.076 40.03 1 10.38 ? N2 N22 219 X 1 HETATM 8 C C1 N22 . . . B 2 -26.914 -10.276 40.371 1 9.94 ? C1 N22 219 X 1 HETATM 9 N N7 N22 . . . B 2 -26.437 -11.354 39.754 1 9.74 ? N7 N22 219 X 1 HETATM 10 C C6 N22 . . . B 2 -27.872 -10.353 41.384 1 10.31 ? C6 N22 219 X 1 HETATM 11 C C9 N22 . . . B 2 -28.422 -11.6 41.812 1 10.56 ? C9 N22 219 X 1 HETATM 12 C C10 N22 . . . B 2 -28.904 -12.666 42.188 1 10.75 ? C10 N22 219 X 1 HETATM 13 C C11 N22 . . . B 2 -29.491 -13.92 42.651 1 10.87 ? C11 N22 219 X 1 HETATM 14 C C13 N22 . . . B 2 -30.806 -13.676 43.384 1 12.85 ? C13 N22 219 X 1 HETATM 15 C C18 N22 . . . B 2 -31.697 -12.685 42.916 1 12.16 ? C18 N22 219 X 1 HETATM 16 C C17 N22 . . . B 2 -32.923 -12.461 43.567 1 15.6 ? C17 N22 219 X 1 HETATM 17 O O2 N22 . . . B 2 -33.823 -11.472 43.163 1 16.54 ? O2 N22 219 X 1 HETATM 18 C C4 N22 . . . B 2 -34.833 -11.919 42.207 1 19.09 ? C4 N22 219 X 1 HETATM 19 C C16 N22 . . . B 2 -33.244 -13.236 44.689 1 14.34 ? C16 N22 219 X 1 HETATM 20 C C15 N22 . . . B 2 -32.364 -14.219 45.15 1 14.84 ? C15 N22 219 X 1 HETATM 21 C C14 N22 . . . B 2 -31.151 -14.432 44.502 1 14.06 ? C14 N22 219 X 1 HETATM 22 O O10 N22 . . . B 2 -30.311 -15.408 44.939 1 15.02 ? O10 N22 219 X 1 HETATM 23 C C2 N22 . . . B 2 -30.518 -15.634 46.345 1 15.7 ? C2 N22 219 X 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 23 #