data_3I8A
#
_model_server_result.job_id            mAuuIpS3mKTefzjYgtf2iw 
_model_server_result.datetime_utc      '2024-11-05 03:33:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":219}' 
#
_entry.id    3I8A 
#
_exptl.entry_id    3I8A 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              312.366 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3I8A 
_cell.length_a            79.164 
_cell.length_b            79.164 
_cell.length_c            108.96 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3I8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H20 N4 O2' 
_chem_comp.formula_weight    312.366 
_chem_comp.id                N22 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[3-(2,5-dimethoxyphenyl)prop-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 N22 sing 224 n n 
C7 C5 N22 sing 225 n n 
C5 N4 N22 doub 226 n y 
C5 C6 N22 sing 227 n y 
N4 C3 N22 sing 228 n y 
C3 N8 N22 sing 229 n n 
C3 N2 N22 doub 230 n y 
N2 C1 N22 sing 231 n y 
C1 N7 N22 sing 232 n n 
C1 C6 N22 doub 233 n y 
C6 C9 N22 sing 234 n n 
C9 C10 N22 trip 235 n n 
C10 C11 N22 sing 236 n n 
C11 C13 N22 sing 237 n n 
C13 C18 N22 doub 238 n y 
C13 C14 N22 sing 239 n y 
C18 C17 N22 sing 240 n y 
C17 O2 N22 sing 241 n n 
C17 C16 N22 doub 242 n y 
O2 C4 N22 sing 243 n n 
C16 C15 N22 sing 244 n y 
C15 C14 N22 doub 245 n y 
C14 O10 N22 sing 246 n n 
O10 C2 N22 sing 247 n n 
C8 H8 N22 sing 248 n n 
C8 H8A N22 sing 249 n n 
C8 H8B N22 sing 250 n n 
C7 H7 N22 sing 251 n n 
C7 H7A N22 sing 252 n n 
N8 HN8 N22 sing 253 n n 
N8 HN8A N22 sing 254 n n 
N7 HN7 N22 sing 255 n n 
N7 HN7A N22 sing 256 n n 
C11 H11 N22 sing 257 n n 
C11 H11A N22 sing 258 n n 
C18 H18 N22 sing 259 n n 
C4 H4 N22 sing 260 n n 
C4 H4A N22 sing 261 n n 
C4 H4B N22 sing 262 n n 
C16 H16 N22 sing 263 n n 
C15 H15 N22 sing 264 n n 
C2 H2 N22 sing 265 n n 
C2 H2A N22 sing 266 n n 
C2 H2B N22 sing 267 n n 
#
_atom_sites.entry_id                     3I8A 
_atom_sites.fract_transf_matrix[1][1]    0.012632 
_atom_sites.fract_transf_matrix[1][2]    0.007293 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 N22 X 1 219 219 N22 N22 . 
C 3 NDP X 1 207 207 NDP NAP . 
D 4 HOH X 1 158 1 HOH HOH . 
D 4 HOH X 2 159 2 HOH HOH . 
D 4 HOH X 3 160 3 HOH HOH . 
D 4 HOH X 4 161 4 HOH HOH . 
D 4 HOH X 5 162 5 HOH HOH . 
D 4 HOH X 6 163 7 HOH HOH . 
D 4 HOH X 7 164 8 HOH HOH . 
D 4 HOH X 8 165 9 HOH HOH . 
D 4 HOH X 9 166 10 HOH HOH . 
D 4 HOH X 10 167 11 HOH HOH . 
D 4 HOH X 11 168 12 HOH HOH . 
D 4 HOH X 12 169 13 HOH HOH . 
D 4 HOH X 13 170 14 HOH HOH . 
D 4 HOH X 14 171 15 HOH HOH . 
D 4 HOH X 15 172 16 HOH HOH . 
D 4 HOH X 16 173 17 HOH HOH . 
D 4 HOH X 17 174 18 HOH HOH . 
D 4 HOH X 18 175 19 HOH HOH . 
D 4 HOH X 19 176 20 HOH HOH . 
D 4 HOH X 20 177 21 HOH HOH . 
D 4 HOH X 21 178 22 HOH HOH . 
D 4 HOH X 22 179 23 HOH HOH . 
D 4 HOH X 23 180 24 HOH HOH . 
D 4 HOH X 24 181 25 HOH HOH . 
D 4 HOH X 25 182 26 HOH HOH . 
D 4 HOH X 26 183 27 HOH HOH . 
D 4 HOH X 27 184 29 HOH HOH . 
D 4 HOH X 28 185 30 HOH HOH . 
D 4 HOH X 29 186 31 HOH HOH . 
D 4 HOH X 30 187 32 HOH HOH . 
D 4 HOH X 31 188 33 HOH HOH . 
D 4 HOH X 32 189 34 HOH HOH . 
D 4 HOH X 33 190 35 HOH HOH . 
D 4 HOH X 34 191 36 HOH HOH . 
D 4 HOH X 35 192 37 HOH HOH . 
D 4 HOH X 36 193 38 HOH HOH . 
D 4 HOH X 37 194 39 HOH HOH . 
D 4 HOH X 38 195 40 HOH HOH . 
D 4 HOH X 39 196 42 HOH HOH . 
D 4 HOH X 40 197 43 HOH HOH . 
D 4 HOH X 41 198 44 HOH HOH . 
D 4 HOH X 42 199 46 HOH HOH . 
D 4 HOH X 43 200 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 N22 . . . B 2 -30.68 -8.756 42.454 1 11.92 ? C8 N22 219 X 1 
HETATM 2 C C7 N22 . . . B 2 -29.355 -9.159 43.094 1 10.78 ? C7 N22 219 X 1 
HETATM 3 C C5 N22 . . . B 2 -28.307 -9.183 41.999 1 10.8 ? C5 N22 219 X 1 
HETATM 4 N N4 N22 . . . B 2 -27.793 -8.006 41.601 1 10.02 ? N4 N22 219 X 1 
HETATM 5 C C3 N22 . . . B 2 -26.874 -7.95 40.624 1 9.75 ? C3 N22 219 X 1 
HETATM 6 N N8 N22 . . . B 2 -26.376 -6.776 40.247 1 9.62 ? N8 N22 219 X 1 
HETATM 7 N N2 N22 . . . B 2 -26.447 -9.076 40.03 1 10.38 ? N2 N22 219 X 1 
HETATM 8 C C1 N22 . . . B 2 -26.914 -10.276 40.371 1 9.94 ? C1 N22 219 X 1 
HETATM 9 N N7 N22 . . . B 2 -26.437 -11.354 39.754 1 9.74 ? N7 N22 219 X 1 
HETATM 10 C C6 N22 . . . B 2 -27.872 -10.353 41.384 1 10.31 ? C6 N22 219 X 1 
HETATM 11 C C9 N22 . . . B 2 -28.422 -11.6 41.812 1 10.56 ? C9 N22 219 X 1 
HETATM 12 C C10 N22 . . . B 2 -28.904 -12.666 42.188 1 10.75 ? C10 N22 219 X 1 
HETATM 13 C C11 N22 . . . B 2 -29.491 -13.92 42.651 1 10.87 ? C11 N22 219 X 1 
HETATM 14 C C13 N22 . . . B 2 -30.806 -13.676 43.384 1 12.85 ? C13 N22 219 X 1 
HETATM 15 C C18 N22 . . . B 2 -31.697 -12.685 42.916 1 12.16 ? C18 N22 219 X 1 
HETATM 16 C C17 N22 . . . B 2 -32.923 -12.461 43.567 1 15.6 ? C17 N22 219 X 1 
HETATM 17 O O2 N22 . . . B 2 -33.823 -11.472 43.163 1 16.54 ? O2 N22 219 X 1 
HETATM 18 C C4 N22 . . . B 2 -34.833 -11.919 42.207 1 19.09 ? C4 N22 219 X 1 
HETATM 19 C C16 N22 . . . B 2 -33.244 -13.236 44.689 1 14.34 ? C16 N22 219 X 1 
HETATM 20 C C15 N22 . . . B 2 -32.364 -14.219 45.15 1 14.84 ? C15 N22 219 X 1 
HETATM 21 C C14 N22 . . . B 2 -31.151 -14.432 44.502 1 14.06 ? C14 N22 219 X 1 
HETATM 22 O O10 N22 . . . B 2 -30.311 -15.408 44.939 1 15.02 ? O10 N22 219 X 1 
HETATM 23 C C2 N22 . . . B 2 -30.518 -15.634 46.345 1 15.7 ? C2 N22 219 X 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           23 
#