data_3I8N
#
_model_server_result.job_id            U1JY5h4c937k5bNnfj2CvQ 
_model_server_result.datetime_utc      '2025-02-27 12:16:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i8n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3I8N 
#
_exptl.entry_id    3I8N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3I8N 
_cell.length_a            69.301 
_cell.length_b            69.301 
_cell.length_c            255.136 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I8N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,C,E 2 1,2 
B,D,F 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+5/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -34.6505 60.016427 212.613333 
3 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 170.090667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 11 A VAL 196 1_555 A N MSE 12 A MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 12 A MSE 197 1_555 A N THR 13 A THR 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C THR 24 A THR 209 1_555 A N MSE 25 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 A C MSE 25 A MSE 210 1_555 A N THR 26 A THR 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C LYS 63 A LYS 248 1_555 A N MSE 64 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 64 A MSE 249 1_555 A N GLN 65 A GLN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C VAL 77 A VAL 262 1_555 A N MSE 78 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 78 A MSE 263 1_555 A N ARG 79 A ARG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale9 A C GLN 96 A GLN 281 1_555 A N MSE 97 A MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MSE 97 A MSE 282 1_555 A N MSE 98 A MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 A C MSE 98 A MSE 283 1_555 A N THR 99 A THR 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale12 B C VAL 11 B VAL 196 1_555 B N MSE 12 B MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 B C MSE 12 B MSE 197 1_555 B N THR 13 B THR 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 B C THR 24 B THR 209 1_555 B N MSE 25 B MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale15 B C MSE 25 B MSE 210 1_555 B N THR 26 B THR 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C LYS 63 B LYS 248 1_555 B N MSE 64 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 B C MSE 64 B MSE 249 1_555 B N GLN 65 B GLN 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 B C VAL 77 B VAL 262 1_555 B N MSE 78 B MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 B C MSE 78 B MSE 263 1_555 B N ARG 79 B ARG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale20 B C GLN 96 B GLN 281 1_555 B N MSE 97 B MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 B C MSE 97 B MSE 282 1_555 B N MSE 98 B MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale22 B C MSE 98 B MSE 283 1_555 B N THR 99 B THR 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 70 n n 
C O2 FMT sing 71 n n 
C H FMT sing 72 n n 
O2 HO2 FMT sing 73 n n 
#
_atom_sites.entry_id                     3I8N 
_atom_sites.fract_transf_matrix[1][1]    0.01443 
_atom_sites.fract_transf_matrix[1][2]    0.008331 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016662 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMT A 1 1 1 FMT FMT . 
D 2 FMT B 1 2 2 FMT FMT . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 5 5 HOH HOH . 
E 3 HOH A 3 9 9 HOH HOH . 
E 3 HOH A 4 13 13 HOH HOH . 
E 3 HOH A 5 17 17 HOH HOH . 
E 3 HOH A 6 19 19 HOH HOH . 
E 3 HOH A 7 21 21 HOH HOH . 
E 3 HOH A 8 22 22 HOH HOH . 
E 3 HOH A 9 24 24 HOH HOH . 
E 3 HOH A 10 25 25 HOH HOH . 
E 3 HOH A 11 27 27 HOH HOH . 
E 3 HOH A 12 28 28 HOH HOH . 
E 3 HOH A 13 29 29 HOH HOH . 
E 3 HOH A 14 30 30 HOH HOH . 
E 3 HOH A 15 31 31 HOH HOH . 
E 3 HOH A 16 33 33 HOH HOH . 
E 3 HOH A 17 39 39 HOH HOH . 
E 3 HOH A 18 40 40 HOH HOH . 
E 3 HOH A 19 41 41 HOH HOH . 
E 3 HOH A 20 42 42 HOH HOH . 
E 3 HOH A 21 43 43 HOH HOH . 
E 3 HOH A 22 44 44 HOH HOH . 
E 3 HOH A 23 46 46 HOH HOH . 
E 3 HOH A 24 48 48 HOH HOH . 
E 3 HOH A 25 50 50 HOH HOH . 
E 3 HOH A 26 54 54 HOH HOH . 
E 3 HOH A 27 55 55 HOH HOH . 
E 3 HOH A 28 56 56 HOH HOH . 
E 3 HOH A 29 57 57 HOH HOH . 
E 3 HOH A 30 58 58 HOH HOH . 
E 3 HOH A 31 59 59 HOH HOH . 
E 3 HOH A 32 62 62 HOH HOH . 
E 3 HOH A 33 63 63 HOH HOH . 
E 3 HOH A 34 64 64 HOH HOH . 
E 3 HOH A 35 65 65 HOH HOH . 
E 3 HOH A 36 69 69 HOH HOH . 
E 3 HOH A 37 72 72 HOH HOH . 
E 3 HOH A 38 75 75 HOH HOH . 
E 3 HOH A 39 76 76 HOH HOH . 
E 3 HOH A 40 77 77 HOH HOH . 
E 3 HOH A 41 78 78 HOH HOH . 
E 3 HOH A 42 80 80 HOH HOH . 
E 3 HOH A 43 81 81 HOH HOH . 
E 3 HOH A 44 88 88 HOH HOH . 
E 3 HOH A 45 90 90 HOH HOH . 
E 3 HOH A 46 94 94 HOH HOH . 
E 3 HOH A 47 99 99 HOH HOH . 
E 3 HOH A 48 100 100 HOH HOH . 
E 3 HOH A 49 101 101 HOH HOH . 
E 3 HOH A 50 316 1 HOH HOH . 
F 3 HOH B 1 3 3 HOH HOH . 
F 3 HOH B 2 4 4 HOH HOH . 
F 3 HOH B 3 6 6 HOH HOH . 
F 3 HOH B 4 7 7 HOH HOH . 
F 3 HOH B 5 8 8 HOH HOH . 
F 3 HOH B 6 10 10 HOH HOH . 
F 3 HOH B 7 11 11 HOH HOH . 
F 3 HOH B 8 12 12 HOH HOH . 
F 3 HOH B 9 14 14 HOH HOH . 
F 3 HOH B 10 15 15 HOH HOH . 
F 3 HOH B 11 16 16 HOH HOH . 
F 3 HOH B 12 18 18 HOH HOH . 
F 3 HOH B 13 20 20 HOH HOH . 
F 3 HOH B 14 23 23 HOH HOH . 
F 3 HOH B 15 26 26 HOH HOH . 
F 3 HOH B 16 32 32 HOH HOH . 
F 3 HOH B 17 34 34 HOH HOH . 
F 3 HOH B 18 35 35 HOH HOH . 
F 3 HOH B 19 36 36 HOH HOH . 
F 3 HOH B 20 37 37 HOH HOH . 
F 3 HOH B 21 38 38 HOH HOH . 
F 3 HOH B 22 45 45 HOH HOH . 
F 3 HOH B 23 47 47 HOH HOH . 
F 3 HOH B 24 49 49 HOH HOH . 
F 3 HOH B 25 51 51 HOH HOH . 
F 3 HOH B 26 52 52 HOH HOH . 
F 3 HOH B 27 53 53 HOH HOH . 
F 3 HOH B 28 60 60 HOH HOH . 
F 3 HOH B 29 61 61 HOH HOH . 
F 3 HOH B 30 66 66 HOH HOH . 
F 3 HOH B 31 67 67 HOH HOH . 
F 3 HOH B 32 68 68 HOH HOH . 
F 3 HOH B 33 70 70 HOH HOH . 
F 3 HOH B 34 71 71 HOH HOH . 
F 3 HOH B 35 73 73 HOH HOH . 
F 3 HOH B 36 74 74 HOH HOH . 
F 3 HOH B 37 79 79 HOH HOH . 
F 3 HOH B 38 82 82 HOH HOH . 
F 3 HOH B 39 83 83 HOH HOH . 
F 3 HOH B 40 84 84 HOH HOH . 
F 3 HOH B 41 85 85 HOH HOH . 
F 3 HOH B 42 86 86 HOH HOH . 
F 3 HOH B 43 87 87 HOH HOH . 
F 3 HOH B 44 89 89 HOH HOH . 
F 3 HOH B 45 91 91 HOH HOH . 
F 3 HOH B 46 92 92 HOH HOH . 
F 3 HOH B 47 93 93 HOH HOH . 
F 3 HOH B 48 95 95 HOH HOH . 
F 3 HOH B 49 96 96 HOH HOH . 
F 3 HOH B 50 97 97 HOH HOH . 
F 3 HOH B 51 98 98 HOH HOH . 
F 3 HOH B 52 102 102 HOH HOH . 
F 3 HOH B 53 103 103 HOH HOH . 
F 3 HOH B 54 104 104 HOH HOH . 
F 3 HOH B 55 105 105 HOH HOH . 
F 3 HOH B 56 106 106 HOH HOH . 
F 3 HOH B 57 107 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . C 2 2.102 39.762 112.496 1 76.34 ? C FMT 1 A 1 
HETATM 2 O O1 FMT . . . C 2 2.448 38.577 112.481 1 77.42 ? O1 FMT 1 A 1 
HETATM 3 O O2 FMT . . . C 2 1.022 40.18 112.929 1 58.47 ? O2 FMT 1 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           1172 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           3 
#