data_3I8T # _model_server_result.job_id mKCZ4GdFAJWeYAmt-lMfHA _model_server_result.datetime_utc '2024-11-14 04:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":167}' # _entry.id 3I8T # _exptl.entry_id 3I8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I8T _cell.length_a 90.841 _cell.length_b 90.841 _cell.length_c 57.104 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 90.841 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 45.4205 45.4205 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -45.4205 45.4205 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC D 1 LAT 2 n B GAL 2 B 2 GAL D 1 LAT # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id GAL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GAL _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.403 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 164 n n C1 C2 GOL sing 165 n n C1 H11 GOL sing 166 n n C1 H12 GOL sing 167 n n O1 HO1 GOL sing 168 n n C2 O2 GOL sing 169 n n C2 C3 GOL sing 170 n n C2 H2 GOL sing 171 n n O2 HO2 GOL sing 172 n n C3 O3 GOL sing 173 n n C3 H31 GOL sing 174 n n C3 H32 GOL sing 175 n n O3 HO3 GOL sing 176 n n # _atom_sites.entry_id 3I8T _atom_sites.fract_transf_matrix[1][1] 0.011008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 166 1 GOL GOL . D 3 GOL A 1 167 2 GOL GOL . E 4 PEG A 1 168 1 PEG PEG . F 5 NA A 1 169 1 NA NA . G 6 HOH A 1 170 1 HOH HOH . G 6 HOH A 2 171 2 HOH HOH . G 6 HOH A 3 172 3 HOH HOH . G 6 HOH A 4 173 4 HOH HOH . G 6 HOH A 5 174 5 HOH HOH . G 6 HOH A 6 175 6 HOH HOH . G 6 HOH A 7 176 7 HOH HOH . G 6 HOH A 8 177 8 HOH HOH . G 6 HOH A 9 178 9 HOH HOH . G 6 HOH A 10 179 10 HOH HOH . G 6 HOH A 11 180 11 HOH HOH . G 6 HOH A 12 181 12 HOH HOH . G 6 HOH A 13 182 13 HOH HOH . G 6 HOH A 14 183 14 HOH HOH . G 6 HOH A 15 184 15 HOH HOH . G 6 HOH A 16 185 16 HOH HOH . G 6 HOH A 17 186 17 HOH HOH . G 6 HOH A 18 187 18 HOH HOH . G 6 HOH A 19 188 19 HOH HOH . G 6 HOH A 20 189 20 HOH HOH . G 6 HOH A 21 190 21 HOH HOH . G 6 HOH A 22 191 22 HOH HOH . G 6 HOH A 23 192 23 HOH HOH . G 6 HOH A 24 193 24 HOH HOH . G 6 HOH A 25 194 25 HOH HOH . G 6 HOH A 26 195 26 HOH HOH . G 6 HOH A 27 196 27 HOH HOH . G 6 HOH A 28 197 28 HOH HOH . G 6 HOH A 29 198 29 HOH HOH . G 6 HOH A 30 199 30 HOH HOH . G 6 HOH A 31 200 31 HOH HOH . G 6 HOH A 32 201 32 HOH HOH . G 6 HOH A 33 202 33 HOH HOH . G 6 HOH A 34 203 34 HOH HOH . G 6 HOH A 35 204 35 HOH HOH . G 6 HOH A 36 205 36 HOH HOH . G 6 HOH A 37 206 37 HOH HOH . G 6 HOH A 38 207 38 HOH HOH . G 6 HOH A 39 208 39 HOH HOH . G 6 HOH A 40 209 40 HOH HOH . G 6 HOH A 41 210 41 HOH HOH . G 6 HOH A 42 211 42 HOH HOH . G 6 HOH A 43 212 43 HOH HOH . G 6 HOH A 44 213 44 HOH HOH . G 6 HOH A 45 214 45 HOH HOH . G 6 HOH A 46 215 46 HOH HOH . G 6 HOH A 47 216 47 HOH HOH . G 6 HOH A 48 217 48 HOH HOH . G 6 HOH A 49 218 49 HOH HOH . G 6 HOH A 50 219 50 HOH HOH . G 6 HOH A 51 220 51 HOH HOH . G 6 HOH A 52 221 52 HOH HOH . G 6 HOH A 53 222 53 HOH HOH . G 6 HOH A 54 223 54 HOH HOH . G 6 HOH A 55 224 55 HOH HOH . G 6 HOH A 56 225 56 HOH HOH . G 6 HOH A 57 226 57 HOH HOH . G 6 HOH A 58 227 58 HOH HOH . G 6 HOH A 59 228 59 HOH HOH . G 6 HOH A 60 229 60 HOH HOH . G 6 HOH A 61 230 61 HOH HOH . G 6 HOH A 62 231 62 HOH HOH . G 6 HOH A 63 232 63 HOH HOH . G 6 HOH A 64 233 64 HOH HOH . G 6 HOH A 65 234 65 HOH HOH . G 6 HOH A 66 235 66 HOH HOH . G 6 HOH A 67 236 67 HOH HOH . G 6 HOH A 68 237 68 HOH HOH . G 6 HOH A 69 238 69 HOH HOH . G 6 HOH A 70 239 70 HOH HOH . G 6 HOH A 71 240 71 HOH HOH . G 6 HOH A 72 241 72 HOH HOH . G 6 HOH A 73 242 73 HOH HOH . G 6 HOH A 74 243 74 HOH HOH . G 6 HOH A 75 244 75 HOH HOH . G 6 HOH A 76 245 76 HOH HOH . G 6 HOH A 77 246 77 HOH HOH . G 6 HOH A 78 247 78 HOH HOH . G 6 HOH A 79 248 79 HOH HOH . G 6 HOH A 80 249 80 HOH HOH . G 6 HOH A 81 250 81 HOH HOH . G 6 HOH A 82 251 82 HOH HOH . G 6 HOH A 83 252 83 HOH HOH . G 6 HOH A 84 253 84 HOH HOH . G 6 HOH A 85 254 85 HOH HOH . G 6 HOH A 86 255 86 HOH HOH . G 6 HOH A 87 256 87 HOH HOH . G 6 HOH A 88 257 89 HOH HOH . G 6 HOH A 89 258 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 4.227 75.691 18.109 1 53.07 ? C1 GOL 167 A 1 HETATM 2 O O1 GOL . . . D 3 3.682 75.448 19.417 1 48.24 ? O1 GOL 167 A 1 HETATM 3 C C2 GOL . . . D 3 5.748 76.009 18.013 1 50.74 ? C2 GOL 167 A 1 HETATM 4 O O2 GOL . . . D 3 6.321 75.312 16.956 1 40.85 ? O2 GOL 167 A 1 HETATM 5 C C3 GOL . . . D 3 6.075 77.47 17.641 1 56.25 ? C3 GOL 167 A 1 HETATM 6 O O3 GOL . . . D 3 7.234 77.504 16.789 1 57.62 ? O3 GOL 167 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #