data_3I8W # _model_server_result.job_id DfI69SeVN3tHq1YZpLRgmw _model_server_result.datetime_utc '2024-12-27 02:29:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 3I8W # _exptl.entry_id 3I8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.749 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT BIS(1,2-DICARBOLLIDE)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I8W _cell.length_a 58.158 _cell.length_b 92.343 _cell.length_c 48.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 97.904 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 92.343 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H22 B18 Co' _chem_comp.formula_weight 323.749 _chem_comp.id CB5 _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT BIS(1,2-DICARBOLLIDE)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B7 CO CB5 sing 70 n n B7 B8 CB5 sing 71 n n B7 B12 CB5 sing 72 n n B7 B11 CB5 sing 73 n n B7 C2 CB5 sing 74 n n B7 H7 CB5 sing 75 n n CO B24 CB5 sing 76 n n CO C22 CB5 sing 77 n n CO B27 CB5 sing 78 n n CO B8 CB5 sing 79 n n CO B4 CB5 sing 80 n n CO C2 CB5 sing 81 n n CO C1 CB5 sing 82 n n CO B28 CB5 sing 83 n n CO C21 CB5 sing 84 n n B24 B29 CB5 sing 85 n n B24 B28 CB5 sing 86 n n B24 C21 CB5 sing 87 n n B24 H24 CB5 sing 88 n n B29 B30 CB5 sing 89 n n B29 B32 CB5 sing 90 n n B29 B28 CB5 sing 91 n n B29 H29 CB5 sing 92 n n B25 B30 CB5 sing 93 n n B25 B26 CB5 sing 94 n n B25 C21 CB5 sing 95 n n B25 H25 CB5 sing 96 n n B30 B32 CB5 sing 97 n n B30 B31 CB5 sing 98 n n B30 B26 CB5 sing 99 n n B30 H30 CB5 sing 100 n n B32 B31 CB5 sing 101 n n B32 B27 CB5 sing 102 n n B32 B28 CB5 sing 103 n n B32 H32 CB5 sing 104 n n B31 B26 CB5 sing 105 n n B31 C22 CB5 sing 106 n n B31 B27 CB5 sing 107 n n B31 H31 CB5 sing 108 n n B26 C22 CB5 sing 109 n n B26 C21 CB5 sing 110 n n B26 H26 CB5 sing 111 n n C22 B27 CB5 sing 112 n n C22 C21 CB5 sing 113 n n C22 H22 CB5 sing 114 n n B27 B28 CB5 sing 115 n n B27 H27 CB5 sing 116 n n B8 B4 CB5 sing 117 n n B8 B9 CB5 sing 118 n n B8 B12 CB5 sing 119 n n B8 H8 CB5 sing 120 n n B4 B9 CB5 sing 121 n n B4 C1 CB5 sing 122 n n B4 H4 CB5 sing 123 n n B9 B5 CB5 sing 124 n n B9 B12 CB5 sing 125 n n B9 B10 CB5 sing 126 n n B9 H9 CB5 sing 127 n n B5 B6 CB5 sing 128 n n B5 C1 CB5 sing 129 n n B5 B10 CB5 sing 130 n n B5 H5 CB5 sing 131 n n B12 B11 CB5 sing 132 n n B12 B10 CB5 sing 133 n n B12 H12 CB5 sing 134 n n B11 B6 CB5 sing 135 n n B11 C2 CB5 sing 136 n n B11 B10 CB5 sing 137 n n B11 H11 CB5 sing 138 n n B6 C2 CB5 sing 139 n n B6 C1 CB5 sing 140 n n B6 B10 CB5 sing 141 n n B6 H6 CB5 sing 142 n n C2 C1 CB5 sing 143 n n C2 H2 CB5 sing 144 n n C1 H1 CB5 sing 145 n n B28 H28 CB5 sing 146 n n C21 H21 CB5 sing 147 n n B10 H10 CB5 sing 148 n n # _atom_sites.entry_id 3I8W _atom_sites.fract_transf_matrix[1][1] 0.017195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CB5 A 1 100 100 CB5 CB5 . C 3 CL A 1 101 101 CL CL . D 4 GOL A 1 102 102 GOL GOL . E 5 HOH A 1 103 103 HOH HOH . E 5 HOH A 2 104 104 HOH HOH . E 5 HOH A 3 105 105 HOH HOH . E 5 HOH A 4 106 106 HOH HOH . E 5 HOH A 5 107 107 HOH HOH . E 5 HOH A 6 108 108 HOH HOH . E 5 HOH A 7 109 109 HOH HOH . E 5 HOH A 8 110 110 HOH HOH . E 5 HOH A 9 111 111 HOH HOH . E 5 HOH A 10 112 112 HOH HOH . E 5 HOH A 11 113 113 HOH HOH . E 5 HOH A 12 114 114 HOH HOH . E 5 HOH A 13 115 115 HOH HOH . E 5 HOH A 14 116 116 HOH HOH . E 5 HOH A 15 117 117 HOH HOH . E 5 HOH A 16 118 118 HOH HOH . E 5 HOH A 17 119 119 HOH HOH . E 5 HOH A 18 120 120 HOH HOH . E 5 HOH A 19 121 121 HOH HOH . E 5 HOH A 20 122 122 HOH HOH . E 5 HOH A 21 123 123 HOH HOH . E 5 HOH A 22 124 124 HOH HOH . E 5 HOH A 23 125 125 HOH HOH . E 5 HOH A 24 126 126 HOH HOH . E 5 HOH A 25 127 127 HOH HOH . E 5 HOH A 26 128 128 HOH HOH . E 5 HOH A 27 129 129 HOH HOH . E 5 HOH A 28 130 130 HOH HOH . E 5 HOH A 29 131 131 HOH HOH . E 5 HOH A 30 132 132 HOH HOH . E 5 HOH A 31 133 133 HOH HOH . E 5 HOH A 32 134 134 HOH HOH . E 5 HOH A 33 135 135 HOH HOH . E 5 HOH A 34 136 136 HOH HOH . E 5 HOH A 35 137 137 HOH HOH . E 5 HOH A 36 138 138 HOH HOH . E 5 HOH A 37 139 139 HOH HOH . E 5 HOH A 38 140 140 HOH HOH . E 5 HOH A 39 141 141 HOH HOH . E 5 HOH A 40 142 142 HOH HOH . E 5 HOH A 41 143 143 HOH HOH . E 5 HOH A 42 144 144 HOH HOH . E 5 HOH A 43 145 145 HOH HOH . E 5 HOH A 44 146 146 HOH HOH . E 5 HOH A 45 147 147 HOH HOH . E 5 HOH A 46 148 148 HOH HOH . E 5 HOH A 47 149 149 HOH HOH . E 5 HOH A 48 150 150 HOH HOH . E 5 HOH A 49 151 151 HOH HOH . E 5 HOH A 50 152 152 HOH HOH . E 5 HOH A 51 153 153 HOH HOH . E 5 HOH A 52 154 154 HOH HOH . E 5 HOH A 53 155 155 HOH HOH . E 5 HOH A 54 156 156 HOH HOH . E 5 HOH A 55 157 157 HOH HOH . E 5 HOH A 56 158 158 HOH HOH . E 5 HOH A 57 159 159 HOH HOH . E 5 HOH A 58 160 160 HOH HOH . E 5 HOH A 59 161 161 HOH HOH . E 5 HOH A 60 162 162 HOH HOH . E 5 HOH A 61 163 163 HOH HOH . E 5 HOH A 62 164 164 HOH HOH . E 5 HOH A 63 165 165 HOH HOH . E 5 HOH A 64 166 166 HOH HOH . E 5 HOH A 65 167 167 HOH HOH . E 5 HOH A 66 168 168 HOH HOH . E 5 HOH A 67 169 169 HOH HOH . E 5 HOH A 68 170 170 HOH HOH . E 5 HOH A 69 171 171 HOH HOH . E 5 HOH A 70 172 172 HOH HOH . E 5 HOH A 71 173 173 HOH HOH . E 5 HOH A 72 174 174 HOH HOH . E 5 HOH A 73 175 175 HOH HOH . E 5 HOH A 74 176 176 HOH HOH . E 5 HOH A 75 177 177 HOH HOH . E 5 HOH A 76 178 178 HOH HOH . E 5 HOH A 77 179 179 HOH HOH . E 5 HOH A 78 180 180 HOH HOH . E 5 HOH A 79 181 181 HOH HOH . E 5 HOH A 80 182 182 HOH HOH . E 5 HOH A 81 183 183 HOH HOH . E 5 HOH A 82 184 184 HOH HOH . E 5 HOH A 83 185 185 HOH HOH . E 5 HOH A 84 186 186 HOH HOH . E 5 HOH A 85 187 187 HOH HOH . E 5 HOH A 86 188 188 HOH HOH . E 5 HOH A 87 189 189 HOH HOH . E 5 HOH A 88 190 190 HOH HOH . E 5 HOH A 89 191 191 HOH HOH . E 5 HOH A 90 192 192 HOH HOH . E 5 HOH A 91 193 193 HOH HOH . E 5 HOH A 92 194 194 HOH HOH . E 5 HOH A 93 195 195 HOH HOH . E 5 HOH A 94 196 196 HOH HOH . E 5 HOH A 95 197 197 HOH HOH . E 5 HOH A 96 198 198 HOH HOH . E 5 HOH A 97 199 199 HOH HOH . E 5 HOH A 98 200 200 HOH HOH . E 5 HOH A 99 201 201 HOH HOH . E 5 HOH A 100 202 202 HOH HOH . E 5 HOH A 101 203 203 HOH HOH . E 5 HOH A 102 204 204 HOH HOH . E 5 HOH A 103 205 205 HOH HOH . E 5 HOH A 104 206 206 HOH HOH . E 5 HOH A 105 207 207 HOH HOH . E 5 HOH A 106 208 208 HOH HOH . E 5 HOH A 107 209 209 HOH HOH . E 5 HOH A 108 210 210 HOH HOH . E 5 HOH A 109 211 211 HOH HOH . E 5 HOH A 110 212 212 HOH HOH . E 5 HOH A 111 213 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B7 CB5 . . . B 2 0.518 50.166 45.831 0.8 52.04 ? B7 CB5 100 A 1 HETATM 2 CO CO CB5 . . . B 2 1.855 49.531 44.342 0.8 53.67 ? CO CB5 100 A 1 HETATM 3 B B24 CB5 . . . B 2 3.292 49.292 42.762 0.8 51.94 ? B24 CB5 100 A 1 HETATM 4 B B29 CB5 . . . B 2 4.94 49.825 43.051 0.8 51.99 ? B29 CB5 100 A 1 HETATM 5 B B25 CB5 . . . B 2 4.572 48.09 42.982 0.8 51.92 ? B25 CB5 100 A 1 HETATM 6 B B30 CB5 . . . B 2 5.745 48.696 44.187 0.8 52.02 ? B30 CB5 100 A 1 HETATM 7 B B32 CB5 . . . B 2 5.155 50.256 44.809 0.8 52.01 ? B32 CB5 100 A 1 HETATM 8 B B31 CB5 . . . B 2 4.896 48.829 45.753 0.8 52.08 ? B31 CB5 100 A 1 HETATM 9 B B26 CB5 . . . B 2 4.517 47.515 44.643 0.8 52.02 ? B26 CB5 100 A 1 HETATM 10 C C22 CB5 . . . B 2 3.309 48.572 45.269 0.8 52.02 ? C22 CB5 100 A 1 HETATM 11 B B27 CB5 . . . B 2 3.582 50.049 45.667 0.8 52.07 ? B27 CB5 100 A 1 HETATM 12 B B8 CB5 . . . B 2 0.153 48.528 45.204 0.8 51.92 ? B8 CB5 100 A 1 HETATM 13 B B4 CB5 . . . B 2 0.154 48.669 43.456 0.8 52.02 ? B4 CB5 100 A 1 HETATM 14 B B9 CB5 . . . B 2 -1.387 48.659 44.308 0.8 51.94 ? B9 CB5 100 A 1 HETATM 15 B B5 CB5 . . . B 2 -1.141 49.807 42.964 0.8 51.94 ? B5 CB5 100 A 1 HETATM 16 B B12 CB5 . . . B 2 -1.166 49.568 45.823 0.8 52.12 ? B12 CB5 100 A 1 HETATM 17 B B11 CB5 . . . B 2 -0.826 51.251 45.409 0.8 52.05 ? B11 CB5 100 A 1 HETATM 18 B B6 CB5 . . . B 2 -0.824 51.401 43.656 0.8 52.07 ? B6 CB5 100 A 1 HETATM 19 C C2 CB5 . . . B 2 0.623 51.129 44.54 0.8 52.24 ? C2 CB5 100 A 1 HETATM 20 C C1 CB5 . . . B 2 0.459 50.401 43.127 0.8 52.09 ? C1 CB5 100 A 1 HETATM 21 B B28 CB5 . . . B 2 3.584 50.407 44.015 0.8 51.92 ? B28 CB5 100 A 1 HETATM 22 C C21 CB5 . . . B 2 3.086 47.983 43.809 0.8 51.97 ? C21 CB5 100 A 1 HETATM 23 B B10 CB5 . . . B 2 -1.994 50.332 44.436 0.8 52.07 ? B10 CB5 100 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #