data_3I8W # _model_server_result.job_id KUOLaoO81r4CxgyeHGgdrA _model_server_result.datetime_utc '2024-12-27 02:11:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 3I8W # _exptl.entry_id 3I8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3I8W _cell.length_a 58.158 _cell.length_b 92.343 _cell.length_c 48.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 97.904 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 92.343 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 208 n n C1 C2 GOL sing 209 n n C1 H11 GOL sing 210 n n C1 H12 GOL sing 211 n n O1 HO1 GOL sing 212 n n C2 O2 GOL sing 213 n n C2 C3 GOL sing 214 n n C2 H2 GOL sing 215 n n O2 HO2 GOL sing 216 n n C3 O3 GOL sing 217 n n C3 H31 GOL sing 218 n n C3 H32 GOL sing 219 n n O3 HO3 GOL sing 220 n n # _atom_sites.entry_id 3I8W _atom_sites.fract_transf_matrix[1][1] 0.017195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CB5 A 1 100 100 CB5 CB5 . C 3 CL A 1 101 101 CL CL . D 4 GOL A 1 102 102 GOL GOL . E 5 HOH A 1 103 103 HOH HOH . E 5 HOH A 2 104 104 HOH HOH . E 5 HOH A 3 105 105 HOH HOH . E 5 HOH A 4 106 106 HOH HOH . E 5 HOH A 5 107 107 HOH HOH . E 5 HOH A 6 108 108 HOH HOH . E 5 HOH A 7 109 109 HOH HOH . E 5 HOH A 8 110 110 HOH HOH . E 5 HOH A 9 111 111 HOH HOH . E 5 HOH A 10 112 112 HOH HOH . E 5 HOH A 11 113 113 HOH HOH . E 5 HOH A 12 114 114 HOH HOH . E 5 HOH A 13 115 115 HOH HOH . E 5 HOH A 14 116 116 HOH HOH . E 5 HOH A 15 117 117 HOH HOH . E 5 HOH A 16 118 118 HOH HOH . E 5 HOH A 17 119 119 HOH HOH . E 5 HOH A 18 120 120 HOH HOH . E 5 HOH A 19 121 121 HOH HOH . E 5 HOH A 20 122 122 HOH HOH . E 5 HOH A 21 123 123 HOH HOH . E 5 HOH A 22 124 124 HOH HOH . E 5 HOH A 23 125 125 HOH HOH . E 5 HOH A 24 126 126 HOH HOH . E 5 HOH A 25 127 127 HOH HOH . E 5 HOH A 26 128 128 HOH HOH . E 5 HOH A 27 129 129 HOH HOH . E 5 HOH A 28 130 130 HOH HOH . E 5 HOH A 29 131 131 HOH HOH . E 5 HOH A 30 132 132 HOH HOH . E 5 HOH A 31 133 133 HOH HOH . E 5 HOH A 32 134 134 HOH HOH . E 5 HOH A 33 135 135 HOH HOH . E 5 HOH A 34 136 136 HOH HOH . E 5 HOH A 35 137 137 HOH HOH . E 5 HOH A 36 138 138 HOH HOH . E 5 HOH A 37 139 139 HOH HOH . E 5 HOH A 38 140 140 HOH HOH . E 5 HOH A 39 141 141 HOH HOH . E 5 HOH A 40 142 142 HOH HOH . E 5 HOH A 41 143 143 HOH HOH . E 5 HOH A 42 144 144 HOH HOH . E 5 HOH A 43 145 145 HOH HOH . E 5 HOH A 44 146 146 HOH HOH . E 5 HOH A 45 147 147 HOH HOH . E 5 HOH A 46 148 148 HOH HOH . E 5 HOH A 47 149 149 HOH HOH . E 5 HOH A 48 150 150 HOH HOH . E 5 HOH A 49 151 151 HOH HOH . E 5 HOH A 50 152 152 HOH HOH . E 5 HOH A 51 153 153 HOH HOH . E 5 HOH A 52 154 154 HOH HOH . E 5 HOH A 53 155 155 HOH HOH . E 5 HOH A 54 156 156 HOH HOH . E 5 HOH A 55 157 157 HOH HOH . E 5 HOH A 56 158 158 HOH HOH . E 5 HOH A 57 159 159 HOH HOH . E 5 HOH A 58 160 160 HOH HOH . E 5 HOH A 59 161 161 HOH HOH . E 5 HOH A 60 162 162 HOH HOH . E 5 HOH A 61 163 163 HOH HOH . E 5 HOH A 62 164 164 HOH HOH . E 5 HOH A 63 165 165 HOH HOH . E 5 HOH A 64 166 166 HOH HOH . E 5 HOH A 65 167 167 HOH HOH . E 5 HOH A 66 168 168 HOH HOH . E 5 HOH A 67 169 169 HOH HOH . E 5 HOH A 68 170 170 HOH HOH . E 5 HOH A 69 171 171 HOH HOH . E 5 HOH A 70 172 172 HOH HOH . E 5 HOH A 71 173 173 HOH HOH . E 5 HOH A 72 174 174 HOH HOH . E 5 HOH A 73 175 175 HOH HOH . E 5 HOH A 74 176 176 HOH HOH . E 5 HOH A 75 177 177 HOH HOH . E 5 HOH A 76 178 178 HOH HOH . E 5 HOH A 77 179 179 HOH HOH . E 5 HOH A 78 180 180 HOH HOH . E 5 HOH A 79 181 181 HOH HOH . E 5 HOH A 80 182 182 HOH HOH . E 5 HOH A 81 183 183 HOH HOH . E 5 HOH A 82 184 184 HOH HOH . E 5 HOH A 83 185 185 HOH HOH . E 5 HOH A 84 186 186 HOH HOH . E 5 HOH A 85 187 187 HOH HOH . E 5 HOH A 86 188 188 HOH HOH . E 5 HOH A 87 189 189 HOH HOH . E 5 HOH A 88 190 190 HOH HOH . E 5 HOH A 89 191 191 HOH HOH . E 5 HOH A 90 192 192 HOH HOH . E 5 HOH A 91 193 193 HOH HOH . E 5 HOH A 92 194 194 HOH HOH . E 5 HOH A 93 195 195 HOH HOH . E 5 HOH A 94 196 196 HOH HOH . E 5 HOH A 95 197 197 HOH HOH . E 5 HOH A 96 198 198 HOH HOH . E 5 HOH A 97 199 199 HOH HOH . E 5 HOH A 98 200 200 HOH HOH . E 5 HOH A 99 201 201 HOH HOH . E 5 HOH A 100 202 202 HOH HOH . E 5 HOH A 101 203 203 HOH HOH . E 5 HOH A 102 204 204 HOH HOH . E 5 HOH A 103 205 205 HOH HOH . E 5 HOH A 104 206 206 HOH HOH . E 5 HOH A 105 207 207 HOH HOH . E 5 HOH A 106 208 208 HOH HOH . E 5 HOH A 107 209 209 HOH HOH . E 5 HOH A 108 210 210 HOH HOH . E 5 HOH A 109 211 211 HOH HOH . E 5 HOH A 110 212 212 HOH HOH . E 5 HOH A 111 213 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 1.199 67.717 28.936 1 54.93 ? C1 GOL 102 A 1 HETATM 2 O O1 GOL . . . D 4 1.5 69.002 28.433 1 56.45 ? O1 GOL 102 A 1 HETATM 3 C C2 GOL . . . D 4 0.566 67.788 30.326 1 54.3 ? C2 GOL 102 A 1 HETATM 4 O O2 GOL . . . D 4 -0.658 68.494 30.282 1 55.11 ? O2 GOL 102 A 1 HETATM 5 C C3 GOL . . . D 4 1.515 68.426 31.335 1 53.11 ? C3 GOL 102 A 1 HETATM 6 O O3 GOL . . . D 4 1.601 69.819 31.117 1 52.59 ? O3 GOL 102 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #