data_3I92 # _model_server_result.job_id aPWDTURTGSz1Sak0wsacmw _model_server_result.datetime_utc '2024-11-07 23:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 3I92 # _exptl.entry_id 3I92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.09 _cell.angle_gamma 90 _cell.entry_id 3I92 _cell.length_a 74.724 _cell.length_b 55.925 _cell.length_c 90.931 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 D MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 E O2B GCP . A GCP 800 1_555 D MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 E O2G GCP . A GCP 800 1_555 D MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 B OG1 THR 17 B THR 17 1_555 F MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 G O2B GCP . B GCP 802 1_555 F MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 G O2G GCP . B GCP 802 1_555 F MG MG . B MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc7 C OG1 THR 17 C THR 17 1_555 H MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 I O2B GCP . C GCP 804 1_555 H MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc9 I O2G GCP . C GCP 804 1_555 H MG MG . C MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id GCP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GCP doub 83 n n PG O2G GCP sing 84 n n PG O3G GCP sing 85 n n PG C3B GCP sing 86 n n O2G HOG2 GCP sing 87 n n O3G HOG3 GCP sing 88 n n C3B PB GCP sing 89 n n C3B H3B1 GCP sing 90 n n C3B H3B2 GCP sing 91 n n PB O1B GCP doub 92 n n PB O2B GCP sing 93 n n PB O3A GCP sing 94 n n O2B HOB2 GCP sing 95 n n O3A PA GCP sing 96 n n PA O1A GCP doub 97 n n PA O2A GCP sing 98 n n PA O5' GCP sing 99 n n O2A HOA2 GCP sing 100 n n O5' C5' GCP sing 101 n n C5' C4' GCP sing 102 n n C5' "H5'2" GCP sing 103 n n C5' "H5'1" GCP sing 104 n n C4' O4' GCP sing 105 n n C4' C3' GCP sing 106 n n C4' H4' GCP sing 107 n n O4' C1' GCP sing 108 n n C3' O3' GCP sing 109 n n C3' C2' GCP sing 110 n n C3' H3' GCP sing 111 n n O3' HO3' GCP sing 112 n n C2' O2' GCP sing 113 n n C2' C1' GCP sing 114 n n C2' H2' GCP sing 115 n n O2' HO2' GCP sing 116 n n C1' N9 GCP sing 117 n n C1' H1' GCP sing 118 n n N9 C8 GCP sing 119 n y N9 C4 GCP sing 120 n y C8 N7 GCP doub 121 n y C8 H8 GCP sing 122 n n N7 C5 GCP sing 123 n y C5 C6 GCP sing 124 n y C5 C4 GCP doub 125 n y C6 O6 GCP doub 126 n n C6 N1 GCP sing 127 n y N1 C2 GCP sing 128 n y N1 HN1 GCP sing 129 n n C2 N2 GCP sing 130 n n C2 N3 GCP doub 131 n y N2 HN21 GCP sing 132 n n N2 HN22 GCP sing 133 n n N3 C4 GCP sing 134 n y # _atom_sites.entry_id 3I92 _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000488 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 801 801 MG MG . E 3 GCP A 1 800 800 GCP GCP . F 2 MG B 1 803 803 MG MG . G 3 GCP B 1 802 802 GCP GCP . H 2 MG C 1 805 805 MG MG . I 3 GCP C 1 804 804 GCP GCP . J 4 HOH A 1 275 8 HOH HOH . J 4 HOH A 2 276 17 HOH HOH . J 4 HOH A 3 277 18 HOH HOH . J 4 HOH A 4 278 21 HOH HOH . K 4 HOH B 1 275 2 HOH HOH . K 4 HOH B 2 276 7 HOH HOH . K 4 HOH B 3 277 9 HOH HOH . K 4 HOH B 4 278 11 HOH HOH . K 4 HOH B 5 279 13 HOH HOH . K 4 HOH B 6 280 14 HOH HOH . K 4 HOH B 7 281 19 HOH HOH . K 4 HOH B 8 282 23 HOH HOH . L 4 HOH C 1 275 3 HOH HOH . L 4 HOH C 2 276 10 HOH HOH . L 4 HOH C 3 277 15 HOH HOH . L 4 HOH C 4 278 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GCP . . . E 3 12.61 4.774 81.256 1 29.53 ? PG GCP 800 A 1 HETATM 2 O O1G GCP . . . E 3 12.151 4.588 82.68 1 29.71 ? O1G GCP 800 A 1 HETATM 3 O O2G GCP . . . E 3 11.545 5.441 80.407 1 30.4 ? O2G GCP 800 A 1 HETATM 4 O O3G GCP . . . E 3 13.235 3.532 80.646 1 28.49 ? O3G GCP 800 A 1 HETATM 5 C C3B GCP . . . E 3 13.927 6.018 81.343 1 28.16 ? C3B GCP 800 A 1 HETATM 6 P PB GCP . . . E 3 14.671 6.316 79.714 1 27.2 ? PB GCP 800 A 1 HETATM 7 O O1B GCP . . . E 3 15.455 5.085 79.348 1 28.74 ? O1B GCP 800 A 1 HETATM 8 O O2B GCP . . . E 3 13.588 6.698 78.737 1 27.28 ? O2B GCP 800 A 1 HETATM 9 O O3A GCP . . . E 3 15.722 7.537 79.829 1 26.84 ? O3A GCP 800 A 1 HETATM 10 P PA GCP . . . E 3 15.232 9.069 79.669 1 27.71 ? PA GCP 800 A 1 HETATM 11 O O1A GCP . . . E 3 16.098 9.767 78.656 1 27.51 ? O1A GCP 800 A 1 HETATM 12 O O2A GCP . . . E 3 13.735 9.111 79.475 1 27.71 ? O2A GCP 800 A 1 HETATM 13 O O5' GCP . . . E 3 15.483 9.716 81.115 1 27.67 ? O5' GCP 800 A 1 HETATM 14 C C5' GCP . . . E 3 16.643 9.463 81.895 1 27.59 ? C5' GCP 800 A 1 HETATM 15 C C4' GCP . . . E 3 17.421 10.75 82.149 1 27.75 ? C4' GCP 800 A 1 HETATM 16 O O4' GCP . . . E 3 18.698 10.538 81.568 1 27.92 ? O4' GCP 800 A 1 HETATM 17 C C3' GCP . . . E 3 16.824 12.018 81.505 1 27.71 ? C3' GCP 800 A 1 HETATM 18 O O3' GCP . . . E 3 16.52 13.031 82.469 1 25.49 ? O3' GCP 800 A 1 HETATM 19 C C2' GCP . . . E 3 17.862 12.549 80.541 1 28.06 ? C2' GCP 800 A 1 HETATM 20 O O2' GCP . . . E 3 18.083 13.941 80.759 1 26.62 ? O2' GCP 800 A 1 HETATM 21 C C1' GCP . . . E 3 19.093 11.778 80.98 1 29.35 ? C1' GCP 800 A 1 HETATM 22 N N9 GCP . . . E 3 20.17 11.677 79.957 1 30.83 ? N9 GCP 800 A 1 HETATM 23 C C8 GCP . . . E 3 20.251 11.143 78.717 1 31.2 ? C8 GCP 800 A 1 HETATM 24 N N7 GCP . . . E 3 21.511 11.339 78.204 1 32.28 ? N7 GCP 800 A 1 HETATM 25 C C5 GCP . . . E 3 22.242 11.996 79.14 1 32.84 ? C5 GCP 800 A 1 HETATM 26 C C6 GCP . . . E 3 23.622 12.544 79.335 1 33.41 ? C6 GCP 800 A 1 HETATM 27 O O6 GCP . . . E 3 24.484 12.437 78.44 1 34.46 ? O6 GCP 800 A 1 HETATM 28 N N1 GCP . . . E 3 23.919 13.166 80.502 1 32.42 ? N1 GCP 800 A 1 HETATM 29 C C2 GCP . . . E 3 23.016 13.312 81.499 1 31.95 ? C2 GCP 800 A 1 HETATM 30 N N2 GCP . . . E 3 23.327 13.936 82.658 1 31.49 ? N2 GCP 800 A 1 HETATM 31 N N3 GCP . . . E 3 21.757 12.844 81.389 1 32.1 ? N3 GCP 800 A 1 HETATM 32 C C4 GCP . . . E 3 21.333 12.205 80.273 1 32.02 ? C4 GCP 800 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #