data_3I93 # _model_server_result.job_id zAIerbnzfBO2fEFBn8CZMg _model_server_result.datetime_utc '2024-11-17 01:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 3I93 # _exptl.entry_id 3I93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I93 _cell.length_a 54.591 _cell.length_b 54.591 _cell.length_c 83.051 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.591 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 27.2955 47.277193 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C TRS . A TRS 202 1_555 D C1 TRS . A TRS 202 3_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale2 E C TRS . A TRS 203 1_555 E C1 TRS . A TRS 203 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.084 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 338 n n C C2 TRS sing 339 n n C C3 TRS sing 340 n n C N TRS sing 341 n n C1 O1 TRS sing 342 n n C1 H11 TRS sing 343 n n C1 H12 TRS sing 344 n n C2 O2 TRS sing 345 n n C2 H21 TRS sing 346 n n C2 H22 TRS sing 347 n n C3 O3 TRS sing 348 n n C3 H31 TRS sing 349 n n C3 H32 TRS sing 350 n n N HN1 TRS sing 351 n n N HN2 TRS sing 352 n n N HN3 TRS sing 353 n n O1 HO1 TRS sing 354 n n O2 HO2 TRS sing 355 n n O3 HO3 TRS sing 356 n n # _atom_sites.entry_id 3I93 _atom_sites.fract_transf_matrix[1][1] 0.018318 _atom_sites.fract_transf_matrix[1][2] 0.010576 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 200 2778 MG MG . C 3 DUP A 1 201 2777 DUP DUP . D 4 TRS A 1 202 2203 TRS TRS . E 4 TRS A 1 203 2204 TRS TRS . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . F 5 HOH A 4 304 4 HOH HOH . F 5 HOH A 5 305 6 HOH HOH . F 5 HOH A 6 306 7 HOH HOH . F 5 HOH A 7 307 8 HOH HOH . F 5 HOH A 8 308 10 HOH HOH . F 5 HOH A 9 309 13 HOH HOH . F 5 HOH A 10 310 15 HOH HOH . F 5 HOH A 11 311 17 HOH HOH . F 5 HOH A 12 312 18 HOH HOH . F 5 HOH A 13 313 19 HOH HOH . F 5 HOH A 14 314 20 HOH HOH . F 5 HOH A 15 315 21 HOH HOH . F 5 HOH A 16 316 22 HOH HOH . F 5 HOH A 17 317 23 HOH HOH . F 5 HOH A 18 318 25 HOH HOH . F 5 HOH A 19 319 26 HOH HOH . F 5 HOH A 20 320 28 HOH HOH . F 5 HOH A 21 321 29 HOH HOH . F 5 HOH A 22 322 30 HOH HOH . F 5 HOH A 23 323 31 HOH HOH . F 5 HOH A 24 324 33 HOH HOH . F 5 HOH A 25 325 35 HOH HOH . F 5 HOH A 26 326 37 HOH HOH . F 5 HOH A 27 327 40 HOH HOH . F 5 HOH A 28 328 41 HOH HOH . F 5 HOH A 29 329 42 HOH HOH . F 5 HOH A 30 330 43 HOH HOH . F 5 HOH A 31 331 44 HOH HOH . F 5 HOH A 32 332 46 HOH HOH . F 5 HOH A 33 333 48 HOH HOH . F 5 HOH A 34 334 50 HOH HOH . F 5 HOH A 35 335 51 HOH HOH . F 5 HOH A 36 336 52 HOH HOH . F 5 HOH A 37 337 54 HOH HOH . F 5 HOH A 38 338 55 HOH HOH . F 5 HOH A 39 339 56 HOH HOH . F 5 HOH A 40 340 57 HOH HOH . F 5 HOH A 41 341 58 HOH HOH . F 5 HOH A 42 342 59 HOH HOH . F 5 HOH A 43 343 60 HOH HOH . F 5 HOH A 44 344 62 HOH HOH . F 5 HOH A 45 345 66 HOH HOH . F 5 HOH A 46 346 67 HOH HOH . F 5 HOH A 47 347 68 HOH HOH . F 5 HOH A 48 348 69 HOH HOH . F 5 HOH A 49 349 70 HOH HOH . F 5 HOH A 50 350 71 HOH HOH . F 5 HOH A 51 351 75 HOH HOH . F 5 HOH A 52 352 76 HOH HOH . F 5 HOH A 53 353 78 HOH HOH . F 5 HOH A 54 354 79 HOH HOH . F 5 HOH A 55 355 80 HOH HOH . F 5 HOH A 56 356 81 HOH HOH . F 5 HOH A 57 357 83 HOH HOH . F 5 HOH A 58 358 84 HOH HOH . F 5 HOH A 59 359 86 HOH HOH . F 5 HOH A 60 360 87 HOH HOH . F 5 HOH A 61 361 88 HOH HOH . F 5 HOH A 62 362 89 HOH HOH . F 5 HOH A 63 363 90 HOH HOH . F 5 HOH A 64 364 91 HOH HOH . F 5 HOH A 65 365 92 HOH HOH . F 5 HOH A 66 366 93 HOH HOH . F 5 HOH A 67 367 95 HOH HOH . F 5 HOH A 68 368 96 HOH HOH . F 5 HOH A 69 369 97 HOH HOH . F 5 HOH A 70 370 98 HOH HOH . F 5 HOH A 71 371 99 HOH HOH . F 5 HOH A 72 372 100 HOH HOH . F 5 HOH A 73 373 101 HOH HOH . F 5 HOH A 74 374 102 HOH HOH . F 5 HOH A 75 375 103 HOH HOH . F 5 HOH A 76 376 104 HOH HOH . F 5 HOH A 77 377 105 HOH HOH . F 5 HOH A 78 378 106 HOH HOH . F 5 HOH A 79 379 107 HOH HOH . F 5 HOH A 80 380 113 HOH HOH . F 5 HOH A 81 381 114 HOH HOH . F 5 HOH A 82 382 115 HOH HOH . F 5 HOH A 83 383 116 HOH HOH . F 5 HOH A 84 384 117 HOH HOH . F 5 HOH A 85 385 118 HOH HOH . F 5 HOH A 86 386 120 HOH HOH . F 5 HOH A 87 387 121 HOH HOH . F 5 HOH A 88 388 122 HOH HOH . F 5 HOH A 89 389 123 HOH HOH . F 5 HOH A 90 390 124 HOH HOH . F 5 HOH A 91 391 125 HOH HOH . F 5 HOH A 92 392 126 HOH HOH . F 5 HOH A 93 393 127 HOH HOH . F 5 HOH A 94 394 128 HOH HOH . F 5 HOH A 95 395 130 HOH HOH . F 5 HOH A 96 396 131 HOH HOH . F 5 HOH A 97 397 132 HOH HOH . F 5 HOH A 98 398 133 HOH HOH . F 5 HOH A 99 399 134 HOH HOH . F 5 HOH A 100 400 136 HOH HOH . F 5 HOH A 101 401 137 HOH HOH . F 5 HOH A 102 402 138 HOH HOH . F 5 HOH A 103 403 139 HOH HOH . F 5 HOH A 104 404 140 HOH HOH . F 5 HOH A 105 405 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 4 -0.346 31.485 34.763 0.33 31.22 ? C TRS 203 A 1 HETATM 2 C C1 TRS . . . E 4 0.356 32.55 35.549 1 31.32 ? C1 TRS 203 A 1 HETATM 3 N N TRS . . . E 4 0.588 30.954 33.728 0.33 31.98 ? N TRS 203 A 1 HETATM 4 O O1 TRS . . . E 4 0.245 33.783 34.897 1 30 ? O1 TRS 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1032 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #