data_3I96 # _model_server_result.job_id QqMwUhiUc9YfggWY0vYy_A _model_server_result.datetime_utc '2024-10-28 11:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":125}' # _entry.id 3I96 # _exptl.entry_id 3I96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I96 _cell.length_a 60.455 _cell.length_b 60.455 _cell.length_c 191.458 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 63.819333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3I96 _atom_sites.fract_transf_matrix[1][1] 0.016541 _atom_sites.fract_transf_matrix[1][2] 0.00955 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CL A 1 120 1 CL CL . E 3 GOL B 1 120 1 GOL GOL . F 3 GOL B 1 121 3 GOL GOL . G 3 GOL B 1 122 5 GOL GOL . H 3 GOL B 1 123 7 GOL GOL . I 3 GOL B 1 124 8 GOL GOL . J 3 GOL B 1 125 9 GOL GOL . K 4 NHE C 1 120 1 NHE NHE . L 5 SO4 C 1 121 1 SO4 SO4 . M 3 GOL C 1 122 2 GOL GOL . N 3 GOL C 1 123 4 GOL GOL . O 6 HOH A 1 121 1 HOH HOH . O 6 HOH A 2 122 4 HOH HOH . O 6 HOH A 3 123 10 HOH HOH . O 6 HOH A 4 124 16 HOH HOH . O 6 HOH A 5 125 19 HOH HOH . O 6 HOH A 6 126 21 HOH HOH . O 6 HOH A 7 127 22 HOH HOH . O 6 HOH A 8 128 128 HOH HOH . O 6 HOH A 9 129 129 HOH HOH . O 6 HOH A 10 130 23 HOH HOH . O 6 HOH A 11 131 24 HOH HOH . O 6 HOH A 12 132 132 HOH HOH . O 6 HOH A 13 133 28 HOH HOH . O 6 HOH A 14 134 30 HOH HOH . O 6 HOH A 15 135 135 HOH HOH . O 6 HOH A 16 136 31 HOH HOH . O 6 HOH A 17 137 32 HOH HOH . O 6 HOH A 18 138 138 HOH HOH . O 6 HOH A 19 139 139 HOH HOH . O 6 HOH A 20 140 140 HOH HOH . O 6 HOH A 21 141 141 HOH HOH . O 6 HOH A 22 142 142 HOH HOH . O 6 HOH A 23 143 143 HOH HOH . O 6 HOH A 24 144 144 HOH HOH . O 6 HOH A 25 145 145 HOH HOH . O 6 HOH A 26 146 33 HOH HOH . O 6 HOH A 27 147 40 HOH HOH . O 6 HOH A 28 148 42 HOH HOH . O 6 HOH A 29 149 46 HOH HOH . O 6 HOH A 30 150 49 HOH HOH . O 6 HOH A 31 151 52 HOH HOH . O 6 HOH A 32 152 152 HOH HOH . O 6 HOH A 33 153 57 HOH HOH . O 6 HOH A 34 154 58 HOH HOH . O 6 HOH A 35 155 155 HOH HOH . O 6 HOH A 36 156 59 HOH HOH . O 6 HOH A 37 157 61 HOH HOH . O 6 HOH A 38 158 69 HOH HOH . O 6 HOH A 39 159 159 HOH HOH . O 6 HOH A 40 160 75 HOH HOH . O 6 HOH A 41 161 78 HOH HOH . O 6 HOH A 42 162 79 HOH HOH . O 6 HOH A 43 163 80 HOH HOH . O 6 HOH A 44 164 82 HOH HOH . O 6 HOH A 45 165 83 HOH HOH . O 6 HOH A 46 166 88 HOH HOH . O 6 HOH A 47 167 167 HOH HOH . O 6 HOH A 48 168 90 HOH HOH . O 6 HOH A 49 169 96 HOH HOH . O 6 HOH A 50 170 105 HOH HOH . O 6 HOH A 51 171 107 HOH HOH . O 6 HOH A 52 172 172 HOH HOH . O 6 HOH A 53 173 173 HOH HOH . O 6 HOH A 54 174 108 HOH HOH . O 6 HOH A 55 175 112 HOH HOH . O 6 HOH A 56 176 114 HOH HOH . O 6 HOH A 57 177 119 HOH HOH . O 6 HOH A 58 268 268 HOH HOH . O 6 HOH A 59 270 270 HOH HOH . O 6 HOH A 60 271 271 HOH HOH . O 6 HOH A 61 279 279 HOH HOH . O 6 HOH A 62 283 283 HOH HOH . O 6 HOH A 63 287 287 HOH HOH . O 6 HOH A 64 289 289 HOH HOH . O 6 HOH A 65 290 290 HOH HOH . O 6 HOH A 66 291 291 HOH HOH . O 6 HOH A 67 295 295 HOH HOH . O 6 HOH A 68 299 299 HOH HOH . O 6 HOH A 69 304 304 HOH HOH . O 6 HOH A 70 313 313 HOH HOH . O 6 HOH A 71 315 315 HOH HOH . O 6 HOH A 72 317 317 HOH HOH . O 6 HOH A 73 324 324 HOH HOH . O 6 HOH A 74 330 330 HOH HOH . O 6 HOH A 75 331 331 HOH HOH . O 6 HOH A 76 336 336 HOH HOH . O 6 HOH A 77 337 337 HOH HOH . O 6 HOH A 78 347 347 HOH HOH . O 6 HOH A 79 353 353 HOH HOH . O 6 HOH A 80 354 354 HOH HOH . O 6 HOH A 81 355 355 HOH HOH . O 6 HOH A 82 356 356 HOH HOH . O 6 HOH A 83 357 357 HOH HOH . O 6 HOH A 84 358 358 HOH HOH . O 6 HOH A 85 359 359 HOH HOH . O 6 HOH A 86 360 360 HOH HOH . O 6 HOH A 87 361 361 HOH HOH . O 6 HOH A 88 365 365 HOH HOH . O 6 HOH A 89 366 366 HOH HOH . O 6 HOH A 90 370 370 HOH HOH . O 6 HOH A 91 371 371 HOH HOH . O 6 HOH A 92 372 372 HOH HOH . O 6 HOH A 93 373 373 HOH HOH . O 6 HOH A 94 374 374 HOH HOH . O 6 HOH A 95 375 375 HOH HOH . O 6 HOH A 96 388 388 HOH HOH . O 6 HOH A 97 389 389 HOH HOH . P 6 HOH B 1 126 126 HOH HOH . P 6 HOH B 2 127 5 HOH HOH . P 6 HOH B 3 128 11 HOH HOH . P 6 HOH B 4 129 15 HOH HOH . P 6 HOH B 5 130 18 HOH HOH . P 6 HOH B 6 131 131 HOH HOH . P 6 HOH B 7 132 26 HOH HOH . P 6 HOH B 8 133 29 HOH HOH . P 6 HOH B 9 134 34 HOH HOH . P 6 HOH B 10 135 37 HOH HOH . P 6 HOH B 11 136 136 HOH HOH . P 6 HOH B 12 137 50 HOH HOH . P 6 HOH B 13 138 53 HOH HOH . P 6 HOH B 14 139 56 HOH HOH . P 6 HOH B 15 140 62 HOH HOH . P 6 HOH B 16 141 63 HOH HOH . P 6 HOH B 17 142 65 HOH HOH . P 6 HOH B 18 143 66 HOH HOH . P 6 HOH B 19 144 67 HOH HOH . P 6 HOH B 20 145 71 HOH HOH . P 6 HOH B 21 146 146 HOH HOH . P 6 HOH B 22 147 147 HOH HOH . P 6 HOH B 23 148 148 HOH HOH . P 6 HOH B 24 149 149 HOH HOH . P 6 HOH B 25 150 150 HOH HOH . P 6 HOH B 26 151 151 HOH HOH . P 6 HOH B 27 152 74 HOH HOH . P 6 HOH B 28 153 76 HOH HOH . P 6 HOH B 29 154 154 HOH HOH . P 6 HOH B 30 155 84 HOH HOH . P 6 HOH B 31 156 87 HOH HOH . P 6 HOH B 32 157 157 HOH HOH . P 6 HOH B 33 158 158 HOH HOH . P 6 HOH B 34 159 89 HOH HOH . P 6 HOH B 35 160 94 HOH HOH . P 6 HOH B 36 161 161 HOH HOH . P 6 HOH B 37 162 95 HOH HOH . P 6 HOH B 38 163 101 HOH HOH . P 6 HOH B 39 164 103 HOH HOH . P 6 HOH B 40 165 104 HOH HOH . P 6 HOH B 41 166 106 HOH HOH . P 6 HOH B 42 167 109 HOH HOH . P 6 HOH B 43 168 168 HOH HOH . P 6 HOH B 44 169 169 HOH HOH . P 6 HOH B 45 170 110 HOH HOH . P 6 HOH B 46 171 171 HOH HOH . P 6 HOH B 47 172 115 HOH HOH . P 6 HOH B 48 173 117 HOH HOH . P 6 HOH B 49 174 120 HOH HOH . P 6 HOH B 50 175 122 HOH HOH . P 6 HOH B 51 176 176 HOH HOH . P 6 HOH B 52 177 177 HOH HOH . P 6 HOH B 53 178 123 HOH HOH . P 6 HOH B 54 179 125 HOH HOH . P 6 HOH B 55 273 273 HOH HOH . P 6 HOH B 56 274 274 HOH HOH . P 6 HOH B 57 278 278 HOH HOH . P 6 HOH B 58 285 285 HOH HOH . P 6 HOH B 59 286 286 HOH HOH . P 6 HOH B 60 293 293 HOH HOH . P 6 HOH B 61 302 302 HOH HOH . P 6 HOH B 62 303 303 HOH HOH . P 6 HOH B 63 305 305 HOH HOH . P 6 HOH B 64 306 306 HOH HOH . P 6 HOH B 65 308 308 HOH HOH . P 6 HOH B 66 312 312 HOH HOH . P 6 HOH B 67 314 314 HOH HOH . P 6 HOH B 68 321 321 HOH HOH . P 6 HOH B 69 322 322 HOH HOH . P 6 HOH B 70 334 334 HOH HOH . P 6 HOH B 71 335 335 HOH HOH . P 6 HOH B 72 338 338 HOH HOH . P 6 HOH B 73 340 340 HOH HOH . P 6 HOH B 74 341 341 HOH HOH . P 6 HOH B 75 342 342 HOH HOH . P 6 HOH B 76 362 362 HOH HOH . P 6 HOH B 77 363 363 HOH HOH . P 6 HOH B 78 367 367 HOH HOH . P 6 HOH B 79 376 376 HOH HOH . P 6 HOH B 80 377 377 HOH HOH . P 6 HOH B 81 378 378 HOH HOH . P 6 HOH B 82 379 379 HOH HOH . P 6 HOH B 83 380 380 HOH HOH . P 6 HOH B 84 381 381 HOH HOH . P 6 HOH B 85 382 382 HOH HOH . P 6 HOH B 86 383 383 HOH HOH . P 6 HOH B 87 384 384 HOH HOH . P 6 HOH B 88 385 385 HOH HOH . P 6 HOH B 89 387 387 HOH HOH . Q 6 HOH C 1 124 124 HOH HOH . Q 6 HOH C 2 125 2 HOH HOH . Q 6 HOH C 3 126 3 HOH HOH . Q 6 HOH C 4 127 127 HOH HOH . Q 6 HOH C 5 128 6 HOH HOH . Q 6 HOH C 6 129 7 HOH HOH . Q 6 HOH C 7 130 130 HOH HOH . Q 6 HOH C 8 131 8 HOH HOH . Q 6 HOH C 9 132 9 HOH HOH . Q 6 HOH C 10 133 133 HOH HOH . Q 6 HOH C 11 134 134 HOH HOH . Q 6 HOH C 12 135 12 HOH HOH . Q 6 HOH C 13 136 13 HOH HOH . Q 6 HOH C 14 137 137 HOH HOH . Q 6 HOH C 15 138 14 HOH HOH . Q 6 HOH C 16 139 17 HOH HOH . Q 6 HOH C 17 140 20 HOH HOH . Q 6 HOH C 18 141 25 HOH HOH . Q 6 HOH C 19 142 27 HOH HOH . Q 6 HOH C 20 143 35 HOH HOH . Q 6 HOH C 21 144 36 HOH HOH . Q 6 HOH C 22 145 38 HOH HOH . Q 6 HOH C 23 146 39 HOH HOH . Q 6 HOH C 24 147 41 HOH HOH . Q 6 HOH C 25 148 43 HOH HOH . Q 6 HOH C 26 149 44 HOH HOH . Q 6 HOH C 27 150 45 HOH HOH . Q 6 HOH C 28 151 47 HOH HOH . Q 6 HOH C 29 152 48 HOH HOH . Q 6 HOH C 30 153 153 HOH HOH . Q 6 HOH C 31 154 51 HOH HOH . Q 6 HOH C 32 155 54 HOH HOH . Q 6 HOH C 33 156 156 HOH HOH . Q 6 HOH C 34 157 55 HOH HOH . Q 6 HOH C 35 158 60 HOH HOH . Q 6 HOH C 36 159 64 HOH HOH . Q 6 HOH C 37 160 160 HOH HOH . Q 6 HOH C 38 161 68 HOH HOH . Q 6 HOH C 39 162 162 HOH HOH . Q 6 HOH C 40 163 163 HOH HOH . Q 6 HOH C 41 164 164 HOH HOH . Q 6 HOH C 42 165 165 HOH HOH . Q 6 HOH C 43 166 70 HOH HOH . Q 6 HOH C 44 167 72 HOH HOH . Q 6 HOH C 45 168 73 HOH HOH . Q 6 HOH C 46 169 77 HOH HOH . Q 6 HOH C 47 170 170 HOH HOH . Q 6 HOH C 48 171 81 HOH HOH . Q 6 HOH C 49 172 85 HOH HOH . Q 6 HOH C 50 173 86 HOH HOH . Q 6 HOH C 51 174 174 HOH HOH . Q 6 HOH C 52 175 175 HOH HOH . Q 6 HOH C 53 176 91 HOH HOH . Q 6 HOH C 54 177 92 HOH HOH . Q 6 HOH C 55 178 93 HOH HOH . Q 6 HOH C 56 179 97 HOH HOH . Q 6 HOH C 57 180 98 HOH HOH . Q 6 HOH C 58 181 99 HOH HOH . Q 6 HOH C 59 182 100 HOH HOH . Q 6 HOH C 60 183 102 HOH HOH . Q 6 HOH C 61 184 111 HOH HOH . Q 6 HOH C 62 185 113 HOH HOH . Q 6 HOH C 63 186 116 HOH HOH . Q 6 HOH C 64 187 118 HOH HOH . Q 6 HOH C 65 188 121 HOH HOH . Q 6 HOH C 66 269 269 HOH HOH . Q 6 HOH C 67 272 272 HOH HOH . Q 6 HOH C 68 280 280 HOH HOH . Q 6 HOH C 69 282 282 HOH HOH . Q 6 HOH C 70 284 284 HOH HOH . Q 6 HOH C 71 288 288 HOH HOH . Q 6 HOH C 72 294 294 HOH HOH . Q 6 HOH C 73 297 297 HOH HOH . Q 6 HOH C 74 307 307 HOH HOH . Q 6 HOH C 75 309 309 HOH HOH . Q 6 HOH C 76 310 310 HOH HOH . Q 6 HOH C 77 311 311 HOH HOH . Q 6 HOH C 78 316 316 HOH HOH . Q 6 HOH C 79 318 318 HOH HOH . Q 6 HOH C 80 327 327 HOH HOH . Q 6 HOH C 81 328 328 HOH HOH . Q 6 HOH C 82 345 345 HOH HOH . Q 6 HOH C 83 348 348 HOH HOH . Q 6 HOH C 84 349 349 HOH HOH . Q 6 HOH C 85 350 350 HOH HOH . Q 6 HOH C 86 351 351 HOH HOH . Q 6 HOH C 87 364 364 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 3 -12.749 20.374 31.763 0.5 20.92 ? C1 GOL 125 B 1 HETATM 2 O O1 GOL . . . J 3 -13.901 21.143 31.963 0.5 22.6 ? O1 GOL 125 B 1 HETATM 3 C C2 GOL . . . J 3 -11.677 20.852 32.727 0.5 27.48 ? C2 GOL 125 B 1 HETATM 4 O O2 GOL . . . J 3 -12.006 22.087 33.303 0.5 32.43 ? O2 GOL 125 B 1 HETATM 5 C C3 GOL . . . J 3 -10.378 21.03 31.992 0.5 27.3 ? C3 GOL 125 B 1 HETATM 6 O O3 GOL . . . J 3 -10.253 20.131 30.946 0.5 32.93 ? O3 GOL 125 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #