data_3I97
#
_model_server_result.job_id            pxBzHAHpZMehy0gxw6F_PQ 
_model_server_result.datetime_utc      '2024-10-10 23:32:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i97 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":156}' 
#
_entry.id    3I97 
#
_exptl.entry_id    3I97 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              497.572 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.7 
_cell.angle_gamma         90 
_cell.entry_id            3I97 
_cell.length_a            41 
_cell.length_b            89.6 
_cell.length_c            41.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I97 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 3 1_555 A SG CYS 155 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf2 B SG CYS 6 B CYS 3 1_555 B SG CYS 155 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C17 H19 N7 O5 S3' 
_chem_comp.formula_weight    497.572 
_chem_comp.id                8DR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2S)-2-[[3-(2,1,3-benzothiadiazol-4-ylsulfonylamino)thiophen-2-yl]carbonylamino]-5-carbamimidamido-pentanoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C 8DR sing 1 n n 
O C 8DR doub 2 n n 
C OXT 8DR sing 3 n n 
CAY N 8DR sing 4 n n 
N CA 8DR sing 5 n n 
N HN 8DR sing 6 n n 
CA CB 8DR sing 7 n n 
CA HA 8DR sing 8 n n 
CB CG 8DR sing 9 n n 
CB HB 8DR sing 10 n n 
CB HBA 8DR sing 11 n n 
CD CG 8DR sing 12 n n 
CD NE 8DR sing 13 n n 
CD HD 8DR sing 14 n n 
CD HDA 8DR sing 15 n n 
NE CZ 8DR sing 16 n n 
NE HNE 8DR sing 17 n n 
CG HG 8DR sing 18 n n 
CG HGA 8DR sing 19 n n 
NH2 CZ 8DR doub 20 n n 
CZ NH1 8DR sing 21 n n 
OAD CAY 8DR doub 22 n n 
SBF OAE 8DR doub 23 n n 
OAF SBF 8DR doub 24 n n 
CAH CAJ 8DR sing 25 n y 
CAH CAL 8DR doub 26 n y 
CAH HAH 8DR sing 27 n n 
SAV CAI 8DR sing 28 n y 
CAI CAK 8DR doub 29 n y 
CAI HAI 8DR sing 30 n n 
CAJ CBA 8DR doub 31 n y 
CAJ HAJ 8DR sing 32 n n 
CAK CAZ 8DR sing 33 n y 
CAK HAK 8DR sing 34 n n 
CAL CBC 8DR sing 35 n y 
CAL HAL 8DR sing 36 n n 
CBC NAP 8DR doub 37 n y 
NAP SAU 8DR sing 38 n y 
CBD NAQ 8DR doub 39 n y 
NAQ SAU 8DR sing 40 n y 
CAZ NAT 8DR sing 41 n n 
NAT SBF 8DR sing 42 n n 
NAT HNAT 8DR sing 43 n n 
SAV CBB 8DR sing 44 n y 
CBB CAY 8DR sing 45 n n 
CBB CAZ 8DR doub 46 n y 
CBA SBF 8DR sing 47 n n 
CBA CBD 8DR sing 48 n y 
CBC CBD 8DR sing 49 n y 
NH1 HNH1 8DR sing 50 n n 
NH1 HNHA 8DR sing 51 n n 
NH2 HNH2 8DR sing 52 n n 
OXT HOXT 8DR sing 53 n n 
#
_atom_sites.entry_id                     3I97 
_atom_sites.fract_transf_matrix[1][1]    0.02439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003298 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011161 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8DR A 1 156 156 8DR 8DR . 
D 3 GOL A 1 157 157 GOL GOL . 
E 2 8DR B 1 156 156 8DR 8DR . 
F 4 HOH A 1 158 158 HOH HOH . 
F 4 HOH A 2 159 159 HOH HOH . 
F 4 HOH A 3 160 160 HOH HOH . 
F 4 HOH A 4 161 161 HOH HOH . 
F 4 HOH A 5 162 162 HOH HOH . 
F 4 HOH A 6 163 163 HOH HOH . 
F 4 HOH A 7 164 164 HOH HOH . 
G 4 HOH B 1 157 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 8DR . . . E 2 6.062 11.685 24.505 1 50.5 ? C 8DR 156 B 1 
HETATM 2 N N 8DR . . . E 2 4.926 12.951 22.817 1 51.88 ? N 8DR 156 B 1 
HETATM 3 O O 8DR . . . E 2 5.826 10.79 25.338 1 50.36 ? O 8DR 156 B 1 
HETATM 4 C CA 8DR . . . E 2 5.375 11.583 23.149 1 50.74 ? CA 8DR 156 B 1 
HETATM 5 C CB 8DR . . . E 2 6.351 11.021 22.105 1 49.69 ? CB 8DR 156 B 1 
HETATM 6 C CD 8DR . . . E 2 4.94 9.621 20.51 1 47.33 ? CD 8DR 156 B 1 
HETATM 7 N NE 8DR . . . E 2 5.81 8.472 20.777 1 46.63 ? NE 8DR 156 B 1 
HETATM 8 C CG 8DR . . . E 2 5.712 10.924 20.713 1 48.64 ? CG 8DR 156 B 1 
HETATM 9 C CZ 8DR . . . E 2 5.5 7.267 20.301 1 46.18 ? CZ 8DR 156 B 1 
HETATM 10 O OAD 8DR . . . E 2 2.722 12.477 23.119 1 52.38 ? OAD 8DR 156 B 1 
HETATM 11 O OAE 8DR . . . E 2 5.095 17.149 19.58 1 54.87 ? OAE 8DR 156 B 1 
HETATM 12 O OAF 8DR . . . E 2 7.27 16 19.78 1 54.45 ? OAF 8DR 156 B 1 
HETATM 13 C CAH 8DR . . . E 2 7.017 19.36 23.347 1 54.58 ? CAH 8DR 156 B 1 
HETATM 14 C CAI 8DR . . . E 2 2.261 16.892 22.232 1 53.47 ? CAI 8DR 156 B 1 
HETATM 15 C CAJ 8DR . . . E 2 6.44 18.243 22.74 1 54.72 ? CAJ 8DR 156 B 1 
HETATM 16 C CAK 8DR . . . E 2 3.525 16.897 21.803 1 53.66 ? CAK 8DR 156 B 1 
HETATM 17 C CAL 8DR . . . E 2 7.887 20.17 22.626 1 54.38 ? CAL 8DR 156 B 1 
HETATM 18 N NAP 8DR . . . E 2 8.993 20.551 20.478 1 54.58 ? NAP 8DR 156 B 1 
HETATM 19 N NAQ 8DR . . . E 2 7.948 18.534 19.416 1 54.36 ? NAQ 8DR 156 B 1 
HETATM 20 N NAT 8DR . . . E 2 5.414 15.522 21.565 1 54.3 ? NAT 8DR 156 B 1 
HETATM 21 S SAU 8DR . . . E 2 8.954 19.729 19.053 1 54.49 ? SAU 8DR 156 B 1 
HETATM 22 S SAV 8DR . . . E 2 1.763 15.36 22.85 1 53.66 ? SAV 8DR 156 B 1 
HETATM 23 C CAY 8DR . . . E 2 3.631 13.273 22.841 1 52.87 ? CAY 8DR 156 B 1 
HETATM 24 C CAZ 8DR . . . E 2 4.138 15.711 21.945 1 53.88 ? CAZ 8DR 156 B 1 
HETATM 25 C CBA 8DR . . . E 2 6.753 17.96 21.412 1 54.75 ? CBA 8DR 156 B 1 
HETATM 26 C CBB 8DR . . . E 2 3.299 14.738 22.51 1 53.48 ? CBB 8DR 156 B 1 
HETATM 27 C CBC 8DR . . . E 2 8.19 19.884 21.298 1 54.48 ? CBC 8DR 156 B 1 
HETATM 28 C CBD 8DR . . . E 2 7.607 18.748 20.686 1 54.63 ? CBD 8DR 156 B 1 
HETATM 29 S SBF 8DR . . . E 2 6.123 16.621 20.54 1 54.69 ? SBF 8DR 156 B 1 
HETATM 30 N NH1 8DR . . . E 2 6.293 6.236 20.547 1 46.22 ? NH1 8DR 156 B 1 
HETATM 31 N NH2 8DR . . . E 2 4.406 7.076 19.576 1 46.03 ? NH2 8DR 156 B 1 
HETATM 32 O OXT 8DR . . . E 2 6.8 12.681 24.68 1 50.7 ? OXT 8DR 156 B 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#