data_3I9J # _model_server_result.job_id 2bo9h2ZAbhxTCoNh9MDhqg _model_server_result.datetime_utc '2024-12-27 14:32:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 3I9J # _exptl.entry_id 3I9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.125 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I9J _cell.length_a 57.121 _cell.length_b 57.121 _cell.length_c 364.683 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? disulf ? disulf2 A SG CYS 51 A CYS 51 1_555 A SG CYS 131 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 112 A CYS 112 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? disulf ? disulf4 A SG CYS 206 A CYS 206 1_555 A SG CYS 227 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf5 A SG CYS 239 A CYS 239 1_555 A SG CYS 248 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf6 B SG CYS 15 B CYS 15 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf7 B SG CYS 51 B CYS 51 1_555 B SG CYS 131 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 B SG CYS 112 B CYS 112 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf9 B SG CYS 206 B CYS 206 1_555 B SG CYS 227 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf10 B SG CYS 239 B CYS 239 1_555 B SG CYS 248 B CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C6 H6 N2 O' _chem_comp.formula_weight 122.125 _chem_comp.id NCA _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NCA doub 298 n y N1 C6 NCA sing 299 n y C2 C3 NCA sing 300 n y C2 H2 NCA sing 301 n n C3 C4 NCA doub 302 n y C3 C7 NCA sing 303 n n C4 C5 NCA sing 304 n y C4 H4 NCA sing 305 n n C5 C6 NCA doub 306 n y C5 H5 NCA sing 307 n n C6 H6 NCA sing 308 n n C7 O7 NCA doub 309 n n C7 N7 NCA sing 310 n n N7 HN71 NCA sing 311 n n N7 HN72 NCA sing 312 n n # _atom_sites.entry_id 3I9J _atom_sites.fract_transf_matrix[1][1] 0.017507 _atom_sites.fract_transf_matrix[1][2] 0.010107 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NFD A 1 301 301 NFD NFD . D 3 AVV B 1 301 301 AVV AVV . E 4 NCA B 1 302 302 NCA NCA . F 5 HOH A 1 259 259 HOH HOH . F 5 HOH A 2 260 260 HOH HOH . F 5 HOH A 3 261 261 HOH HOH . F 5 HOH A 4 262 262 HOH HOH . F 5 HOH A 5 263 263 HOH HOH . F 5 HOH A 6 264 264 HOH HOH . F 5 HOH A 7 265 265 HOH HOH . F 5 HOH A 8 266 266 HOH HOH . F 5 HOH A 9 267 267 HOH HOH . F 5 HOH A 10 268 268 HOH HOH . F 5 HOH A 11 269 269 HOH HOH . F 5 HOH A 12 270 270 HOH HOH . F 5 HOH A 13 271 271 HOH HOH . F 5 HOH A 14 272 272 HOH HOH . F 5 HOH A 15 273 273 HOH HOH . F 5 HOH A 16 274 274 HOH HOH . F 5 HOH A 17 275 275 HOH HOH . F 5 HOH A 18 276 276 HOH HOH . F 5 HOH A 19 277 277 HOH HOH . F 5 HOH A 20 278 278 HOH HOH . F 5 HOH A 21 279 279 HOH HOH . F 5 HOH A 22 280 280 HOH HOH . F 5 HOH A 23 281 281 HOH HOH . F 5 HOH A 24 282 282 HOH HOH . F 5 HOH A 25 283 283 HOH HOH . F 5 HOH A 26 284 284 HOH HOH . F 5 HOH A 27 285 285 HOH HOH . F 5 HOH A 28 286 286 HOH HOH . F 5 HOH A 29 287 287 HOH HOH . F 5 HOH A 30 288 288 HOH HOH . F 5 HOH A 31 289 289 HOH HOH . F 5 HOH A 32 290 290 HOH HOH . F 5 HOH A 33 291 291 HOH HOH . F 5 HOH A 34 292 292 HOH HOH . F 5 HOH A 35 293 293 HOH HOH . F 5 HOH A 36 294 294 HOH HOH . F 5 HOH A 37 295 295 HOH HOH . F 5 HOH A 38 296 296 HOH HOH . F 5 HOH A 39 297 297 HOH HOH . F 5 HOH A 40 298 298 HOH HOH . F 5 HOH A 41 299 299 HOH HOH . F 5 HOH A 42 300 300 HOH HOH . F 5 HOH A 43 302 302 HOH HOH . F 5 HOH A 44 303 303 HOH HOH . F 5 HOH A 45 304 304 HOH HOH . F 5 HOH A 46 305 305 HOH HOH . F 5 HOH A 47 306 306 HOH HOH . F 5 HOH A 48 307 307 HOH HOH . F 5 HOH A 49 308 308 HOH HOH . F 5 HOH A 50 309 309 HOH HOH . F 5 HOH A 51 310 310 HOH HOH . F 5 HOH A 52 311 311 HOH HOH . F 5 HOH A 53 312 312 HOH HOH . F 5 HOH A 54 313 313 HOH HOH . F 5 HOH A 55 314 314 HOH HOH . F 5 HOH A 56 315 315 HOH HOH . G 5 HOH B 1 259 259 HOH HOH . G 5 HOH B 2 260 260 HOH HOH . G 5 HOH B 3 261 261 HOH HOH . G 5 HOH B 4 262 262 HOH HOH . G 5 HOH B 5 263 263 HOH HOH . G 5 HOH B 6 264 264 HOH HOH . G 5 HOH B 7 265 265 HOH HOH . G 5 HOH B 8 266 266 HOH HOH . G 5 HOH B 9 267 267 HOH HOH . G 5 HOH B 10 268 268 HOH HOH . G 5 HOH B 11 269 269 HOH HOH . G 5 HOH B 12 270 270 HOH HOH . G 5 HOH B 13 271 271 HOH HOH . G 5 HOH B 14 272 272 HOH HOH . G 5 HOH B 15 273 273 HOH HOH . G 5 HOH B 16 274 274 HOH HOH . G 5 HOH B 17 275 275 HOH HOH . G 5 HOH B 18 276 276 HOH HOH . G 5 HOH B 19 277 277 HOH HOH . G 5 HOH B 20 278 278 HOH HOH . G 5 HOH B 21 279 279 HOH HOH . G 5 HOH B 22 280 280 HOH HOH . G 5 HOH B 23 281 281 HOH HOH . G 5 HOH B 24 282 282 HOH HOH . G 5 HOH B 25 283 283 HOH HOH . G 5 HOH B 26 284 284 HOH HOH . G 5 HOH B 27 285 285 HOH HOH . G 5 HOH B 28 286 286 HOH HOH . G 5 HOH B 29 287 287 HOH HOH . G 5 HOH B 30 288 288 HOH HOH . G 5 HOH B 31 289 289 HOH HOH . G 5 HOH B 32 290 290 HOH HOH . G 5 HOH B 33 291 291 HOH HOH . G 5 HOH B 34 292 292 HOH HOH . G 5 HOH B 35 293 293 HOH HOH . G 5 HOH B 36 294 294 HOH HOH . G 5 HOH B 37 295 295 HOH HOH . G 5 HOH B 38 296 296 HOH HOH . G 5 HOH B 39 297 297 HOH HOH . G 5 HOH B 40 298 298 HOH HOH . G 5 HOH B 41 299 299 HOH HOH . G 5 HOH B 42 300 300 HOH HOH . G 5 HOH B 43 303 303 HOH HOH . G 5 HOH B 44 304 304 HOH HOH . G 5 HOH B 45 305 305 HOH HOH . G 5 HOH B 46 306 306 HOH HOH . G 5 HOH B 47 307 307 HOH HOH . G 5 HOH B 48 308 308 HOH HOH . G 5 HOH B 49 309 309 HOH HOH . G 5 HOH B 50 310 310 HOH HOH . G 5 HOH B 51 311 311 HOH HOH . G 5 HOH B 52 312 312 HOH HOH . G 5 HOH B 53 313 313 HOH HOH . G 5 HOH B 54 314 314 HOH HOH . G 5 HOH B 55 315 315 HOH HOH . G 5 HOH B 56 316 316 HOH HOH . G 5 HOH B 57 317 317 HOH HOH . G 5 HOH B 58 318 318 HOH HOH . G 5 HOH B 59 319 319 HOH HOH . G 5 HOH B 60 320 320 HOH HOH . G 5 HOH B 61 321 321 HOH HOH . G 5 HOH B 62 322 322 HOH HOH . G 5 HOH B 63 323 323 HOH HOH . G 5 HOH B 64 324 324 HOH HOH . G 5 HOH B 65 325 325 HOH HOH . G 5 HOH B 66 326 326 HOH HOH . G 5 HOH B 67 327 327 HOH HOH . G 5 HOH B 68 328 328 HOH HOH . G 5 HOH B 69 329 329 HOH HOH . G 5 HOH B 70 330 330 HOH HOH . G 5 HOH B 71 331 331 HOH HOH . G 5 HOH B 72 332 332 HOH HOH . G 5 HOH B 73 333 333 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCA . . . E 4 9.369 1.696 -16.829 1 59.5 ? N1 NCA 302 B 1 HETATM 2 C C2 NCA . . . E 4 9.122 2.672 -15.946 1 60.49 ? C2 NCA 302 B 1 HETATM 3 C C3 NCA . . . E 4 8.656 3.919 -16.364 1 57.7 ? C3 NCA 302 B 1 HETATM 4 C C4 NCA . . . E 4 8.417 4.207 -17.68 1 57.27 ? C4 NCA 302 B 1 HETATM 5 C C5 NCA . . . E 4 8.685 3.173 -18.541 1 60.64 ? C5 NCA 302 B 1 HETATM 6 C C6 NCA . . . E 4 9.167 1.937 -18.103 1 58.88 ? C6 NCA 302 B 1 HETATM 7 C C7 NCA . . . E 4 8.411 5.011 -15.419 1 55.45 ? C7 NCA 302 B 1 HETATM 8 O O7 NCA . . . E 4 8.107 6.086 -15.976 1 51.84 ? O7 NCA 302 B 1 HETATM 9 N N7 NCA . . . E 4 8.545 4.717 -14.112 1 51.79 ? N7 NCA 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #