data_3I9T # _model_server_result.job_id MH6pjTcj9FmWTxanYlxNog _model_server_result.datetime_utc '2024-11-16 14:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3i9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3I9T # _exptl.entry_id 3I9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3I9T _cell.length_a 65.739 _cell.length_b 65.739 _cell.length_c 120.663 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3I9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 B FE HEM . A HEM 300 1_555 C S1 DTV . A DTV 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 133 n n CHA C4D HEM doub 134 n n CHA HHA HEM sing 135 n n CHB C4A HEM sing 136 n n CHB C1B HEM doub 137 n n CHB HHB HEM sing 138 n n CHC C4B HEM sing 139 n n CHC C1C HEM doub 140 n n CHC HHC HEM sing 141 n n CHD C4C HEM doub 142 n n CHD C1D HEM sing 143 n n CHD HHD HEM sing 144 n n C1A C2A HEM doub 145 n y C1A NA HEM sing 146 n y C2A C3A HEM sing 147 n y C2A CAA HEM sing 148 n n C3A C4A HEM doub 149 n y C3A CMA HEM sing 150 n n C4A NA HEM sing 151 n y CMA HMA HEM sing 152 n n CMA HMAA HEM sing 153 n n CMA HMAB HEM sing 154 n n CAA CBA HEM sing 155 n n CAA HAA HEM sing 156 n n CAA HAAA HEM sing 157 n n CBA CGA HEM sing 158 n n CBA HBA HEM sing 159 n n CBA HBAA HEM sing 160 n n CGA O1A HEM doub 161 n n CGA O2A HEM sing 162 n n C1B C2B HEM sing 163 n n C1B NB HEM sing 164 n n C2B C3B HEM doub 165 n n C2B CMB HEM sing 166 n n C3B C4B HEM sing 167 n n C3B CAB HEM sing 168 n n C4B NB HEM doub 169 n n CMB HMB HEM sing 170 n n CMB HMBA HEM sing 171 n n CMB HMBB HEM sing 172 n n CAB CBB HEM doub 173 n n CAB HAB HEM sing 174 n n CBB HBB HEM sing 175 n n CBB HBBA HEM sing 176 n n C1C C2C HEM sing 177 n y C1C NC HEM sing 178 n y C2C C3C HEM doub 179 n y C2C CMC HEM sing 180 n n C3C C4C HEM sing 181 n y C3C CAC HEM sing 182 n n C4C NC HEM sing 183 n y CMC HMC HEM sing 184 n n CMC HMCA HEM sing 185 n n CMC HMCB HEM sing 186 n n CAC CBC HEM doub 187 n n CAC HAC HEM sing 188 n n CBC HBC HEM sing 189 n n CBC HBCA HEM sing 190 n n C1D C2D HEM sing 191 n n C1D ND HEM doub 192 n n C2D C3D HEM doub 193 n n C2D CMD HEM sing 194 n n C3D C4D HEM sing 195 n n C3D CAD HEM sing 196 n n C4D ND HEM sing 197 n n CMD HMD HEM sing 198 n n CMD HMDA HEM sing 199 n n CMD HMDB HEM sing 200 n n CAD CBD HEM sing 201 n n CAD HAD HEM sing 202 n n CAD HADA HEM sing 203 n n CBD CGD HEM sing 204 n n CBD HBD HEM sing 205 n n CBD HBDA HEM sing 206 n n CGD O1D HEM doub 207 n n CGD O2D HEM sing 208 n n O2A H2A HEM sing 209 n n O2D H2D HEM sing 210 n n FE NA HEM sing 211 n n FE NB HEM sing 212 n n FE NC HEM sing 213 n n FE ND HEM sing 214 n n # _atom_sites.entry_id 3I9T _atom_sites.fract_transf_matrix[1][1] 0.015212 _atom_sites.fract_transf_matrix[1][2] 0.008782 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 DTV A 1 2002 2002 DTV DTV . D 4 HOH A 1 290 1 HOH HOH . D 4 HOH A 2 291 2 HOH HOH . D 4 HOH A 3 292 3 HOH HOH . D 4 HOH A 4 293 4 HOH HOH . D 4 HOH A 5 294 5 HOH HOH . D 4 HOH A 6 295 6 HOH HOH . D 4 HOH A 7 296 7 HOH HOH . D 4 HOH A 8 297 8 HOH HOH . D 4 HOH A 9 298 9 HOH HOH . D 4 HOH A 10 299 10 HOH HOH . D 4 HOH A 11 301 11 HOH HOH . D 4 HOH A 12 302 12 HOH HOH . D 4 HOH A 13 303 13 HOH HOH . D 4 HOH A 14 304 14 HOH HOH . D 4 HOH A 15 305 15 HOH HOH . D 4 HOH A 16 306 16 HOH HOH . D 4 HOH A 17 307 17 HOH HOH . D 4 HOH A 18 308 18 HOH HOH . D 4 HOH A 19 309 19 HOH HOH . D 4 HOH A 20 310 20 HOH HOH . D 4 HOH A 21 311 21 HOH HOH . D 4 HOH A 22 312 22 HOH HOH . D 4 HOH A 23 313 23 HOH HOH . D 4 HOH A 24 314 24 HOH HOH . D 4 HOH A 25 315 25 HOH HOH . D 4 HOH A 26 316 26 HOH HOH . D 4 HOH A 27 317 27 HOH HOH . D 4 HOH A 28 318 28 HOH HOH . D 4 HOH A 29 319 29 HOH HOH . D 4 HOH A 30 320 30 HOH HOH . D 4 HOH A 31 321 31 HOH HOH . D 4 HOH A 32 322 32 HOH HOH . D 4 HOH A 33 323 33 HOH HOH . D 4 HOH A 34 324 34 HOH HOH . D 4 HOH A 35 325 35 HOH HOH . D 4 HOH A 36 326 36 HOH HOH . D 4 HOH A 37 327 37 HOH HOH . D 4 HOH A 38 328 38 HOH HOH . D 4 HOH A 39 329 39 HOH HOH . D 4 HOH A 40 330 40 HOH HOH . D 4 HOH A 41 331 41 HOH HOH . D 4 HOH A 42 332 42 HOH HOH . D 4 HOH A 43 333 43 HOH HOH . D 4 HOH A 44 334 44 HOH HOH . D 4 HOH A 45 335 45 HOH HOH . D 4 HOH A 46 336 46 HOH HOH . D 4 HOH A 47 337 47 HOH HOH . D 4 HOH A 48 338 48 HOH HOH . D 4 HOH A 49 339 49 HOH HOH . D 4 HOH A 50 340 50 HOH HOH . D 4 HOH A 51 341 51 HOH HOH . D 4 HOH A 52 342 52 HOH HOH . D 4 HOH A 53 343 53 HOH HOH . D 4 HOH A 54 344 54 HOH HOH . D 4 HOH A 55 345 55 HOH HOH . D 4 HOH A 56 346 57 HOH HOH . D 4 HOH A 57 347 58 HOH HOH . D 4 HOH A 58 348 59 HOH HOH . D 4 HOH A 59 349 60 HOH HOH . D 4 HOH A 60 350 61 HOH HOH . D 4 HOH A 61 351 62 HOH HOH . D 4 HOH A 62 352 63 HOH HOH . D 4 HOH A 63 353 64 HOH HOH . D 4 HOH A 64 354 65 HOH HOH . D 4 HOH A 65 355 66 HOH HOH . D 4 HOH A 66 356 67 HOH HOH . D 4 HOH A 67 357 68 HOH HOH . D 4 HOH A 68 358 69 HOH HOH . D 4 HOH A 69 359 71 HOH HOH . D 4 HOH A 70 360 72 HOH HOH . D 4 HOH A 71 361 73 HOH HOH . D 4 HOH A 72 362 74 HOH HOH . D 4 HOH A 73 363 75 HOH HOH . D 4 HOH A 74 364 76 HOH HOH . D 4 HOH A 75 365 77 HOH HOH . D 4 HOH A 76 366 78 HOH HOH . D 4 HOH A 77 367 79 HOH HOH . D 4 HOH A 78 368 80 HOH HOH . D 4 HOH A 79 369 81 HOH HOH . D 4 HOH A 80 370 82 HOH HOH . D 4 HOH A 81 371 84 HOH HOH . D 4 HOH A 82 372 85 HOH HOH . D 4 HOH A 83 373 86 HOH HOH . D 4 HOH A 84 374 88 HOH HOH . D 4 HOH A 85 375 89 HOH HOH . D 4 HOH A 86 376 90 HOH HOH . D 4 HOH A 87 377 91 HOH HOH . D 4 HOH A 88 378 92 HOH HOH . D 4 HOH A 89 379 93 HOH HOH . D 4 HOH A 90 380 95 HOH HOH . D 4 HOH A 91 381 96 HOH HOH . D 4 HOH A 92 382 97 HOH HOH . D 4 HOH A 93 383 98 HOH HOH . D 4 HOH A 94 384 99 HOH HOH . D 4 HOH A 95 385 100 HOH HOH . D 4 HOH A 96 386 101 HOH HOH . D 4 HOH A 97 387 102 HOH HOH . D 4 HOH A 98 388 103 HOH HOH . D 4 HOH A 99 389 104 HOH HOH . D 4 HOH A 100 390 105 HOH HOH . D 4 HOH A 101 391 106 HOH HOH . D 4 HOH A 102 392 107 HOH HOH . D 4 HOH A 103 393 108 HOH HOH . D 4 HOH A 104 394 109 HOH HOH . D 4 HOH A 105 395 110 HOH HOH . D 4 HOH A 106 396 112 HOH HOH . D 4 HOH A 107 397 113 HOH HOH . D 4 HOH A 108 398 114 HOH HOH . D 4 HOH A 109 399 116 HOH HOH . D 4 HOH A 110 400 117 HOH HOH . D 4 HOH A 111 401 119 HOH HOH . D 4 HOH A 112 402 120 HOH HOH . D 4 HOH A 113 403 123 HOH HOH . D 4 HOH A 114 404 128 HOH HOH . D 4 HOH A 115 405 129 HOH HOH . D 4 HOH A 116 406 131 HOH HOH . D 4 HOH A 117 407 133 HOH HOH . D 4 HOH A 118 408 134 HOH HOH . D 4 HOH A 119 409 135 HOH HOH . D 4 HOH A 120 410 137 HOH HOH . D 4 HOH A 121 411 149 HOH HOH . D 4 HOH A 122 412 151 HOH HOH . D 4 HOH A 123 413 153 HOH HOH . D 4 HOH A 124 414 155 HOH HOH . D 4 HOH A 125 415 157 HOH HOH . D 4 HOH A 126 416 159 HOH HOH . D 4 HOH A 127 417 169 HOH HOH . D 4 HOH A 128 418 172 HOH HOH . D 4 HOH A 129 419 178 HOH HOH . D 4 HOH A 130 420 183 HOH HOH . D 4 HOH A 131 421 187 HOH HOH . D 4 HOH A 132 422 188 HOH HOH . D 4 HOH A 133 423 189 HOH HOH . D 4 HOH A 134 424 190 HOH HOH . D 4 HOH A 135 425 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -3.85 -25.537 -168.392 1 31.82 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . B 2 -1.211 -27.383 -172.034 1 33.04 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . B 2 0.256 -31.124 -169.229 1 27.1 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . B 2 -3.009 -29.691 -165.953 1 26.67 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . B 2 -3.182 -25.691 -169.588 1 31.59 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . B 2 -3.197 -24.729 -170.676 1 31.94 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . B 2 -2.499 -25.236 -171.682 1 31.89 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . B 2 -1.98 -26.528 -171.258 1 30.19 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . B 2 -2.21 -24.506 -173.026 1 34.93 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . B 2 -3.909 -23.345 -170.622 1 37.13 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . B 2 -2.96 -22.373 -169.907 1 44.37 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . B 2 -3.518 -20.963 -169.925 1 51.61 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . B 2 -4.213 -20.562 -170.922 1 55.65 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . B 2 -3.245 -20.226 -168.944 1 52.1 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . B 2 -0.623 -28.575 -171.64 1 31.28 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . B 2 0.17 -29.488 -172.478 1 33.41 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . B 2 0.598 -30.478 -171.669 1 33.61 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . B 2 0.053 -30.285 -170.321 1 31.93 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . B 2 0.495 -29.281 -173.985 1 32.29 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . B 2 1.446 -31.697 -172.029 1 37.55 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . B 2 2.572 -31.475 -172.694 1 43.14 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . B 2 -0.506 -31.118 -168.097 1 28.83 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . B 2 -0.489 -32.087 -167.013 1 29.98 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . B 2 -1.445 -31.661 -166.123 1 30.13 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . B 2 -2.023 -30.411 -166.58 1 27.27 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . B 2 0.388 -33.374 -166.848 1 25.68 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . B 2 -1.765 -32.332 -164.745 1 27.58 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . B 2 -2.34 -33.511 -164.584 1 38.26 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . B 2 -3.509 -28.45 -166.257 1 28.36 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . B 2 -4.407 -27.673 -165.403 1 25.68 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . B 2 -4.672 -26.393 -166.137 1 27.16 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . B 2 -3.91 -26.495 -167.379 1 32.04 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . B 2 -4.951 -28.082 -164.033 1 24.84 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . B 2 -5.592 -25.231 -165.694 1 25.72 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . B 2 -4.702 -24.079 -165.213 1 31.01 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . B 2 -5.658 -23.019 -164.708 1 36 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . B 2 -5.713 -22.752 -163.476 1 36.73 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . B 2 -6.426 -22.483 -165.546 1 38.66 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . B 2 -2.432 -26.781 -169.972 1 29.11 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . B 2 -0.638 -29.085 -170.351 1 30.35 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . B 2 -1.462 -30.118 -167.792 1 28.28 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . B 2 -3.211 -27.687 -167.378 1 30.26 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . B 2 -1.946 -28.4 -168.817 1 29 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #