data_3I9U
#
_model_server_result.job_id            FhlbT5aaJnPoCjzVYk6qsA 
_model_server_result.datetime_utc      '2024-11-13 13:16:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3i9u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":300}' 
#
_entry.id    3I9U 
#
_exptl.entry_id    3I9U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3I9U 
_cell.length_a            65.882 
_cell.length_b            65.882 
_cell.length_c            120.244 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3I9U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc2 B FE HEM . A HEM 300 1_555 C S1 DTU . A DTU 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 133 n n 
CHA C4D HEM doub 134 n n 
CHA HHA HEM sing 135 n n 
CHB C4A HEM sing 136 n n 
CHB C1B HEM doub 137 n n 
CHB HHB HEM sing 138 n n 
CHC C4B HEM sing 139 n n 
CHC C1C HEM doub 140 n n 
CHC HHC HEM sing 141 n n 
CHD C4C HEM doub 142 n n 
CHD C1D HEM sing 143 n n 
CHD HHD HEM sing 144 n n 
C1A C2A HEM doub 145 n y 
C1A NA HEM sing 146 n y 
C2A C3A HEM sing 147 n y 
C2A CAA HEM sing 148 n n 
C3A C4A HEM doub 149 n y 
C3A CMA HEM sing 150 n n 
C4A NA HEM sing 151 n y 
CMA HMA HEM sing 152 n n 
CMA HMAA HEM sing 153 n n 
CMA HMAB HEM sing 154 n n 
CAA CBA HEM sing 155 n n 
CAA HAA HEM sing 156 n n 
CAA HAAA HEM sing 157 n n 
CBA CGA HEM sing 158 n n 
CBA HBA HEM sing 159 n n 
CBA HBAA HEM sing 160 n n 
CGA O1A HEM doub 161 n n 
CGA O2A HEM sing 162 n n 
C1B C2B HEM sing 163 n n 
C1B NB HEM sing 164 n n 
C2B C3B HEM doub 165 n n 
C2B CMB HEM sing 166 n n 
C3B C4B HEM sing 167 n n 
C3B CAB HEM sing 168 n n 
C4B NB HEM doub 169 n n 
CMB HMB HEM sing 170 n n 
CMB HMBA HEM sing 171 n n 
CMB HMBB HEM sing 172 n n 
CAB CBB HEM doub 173 n n 
CAB HAB HEM sing 174 n n 
CBB HBB HEM sing 175 n n 
CBB HBBA HEM sing 176 n n 
C1C C2C HEM sing 177 n y 
C1C NC HEM sing 178 n y 
C2C C3C HEM doub 179 n y 
C2C CMC HEM sing 180 n n 
C3C C4C HEM sing 181 n y 
C3C CAC HEM sing 182 n n 
C4C NC HEM sing 183 n y 
CMC HMC HEM sing 184 n n 
CMC HMCA HEM sing 185 n n 
CMC HMCB HEM sing 186 n n 
CAC CBC HEM doub 187 n n 
CAC HAC HEM sing 188 n n 
CBC HBC HEM sing 189 n n 
CBC HBCA HEM sing 190 n n 
C1D C2D HEM sing 191 n n 
C1D ND HEM doub 192 n n 
C2D C3D HEM doub 193 n n 
C2D CMD HEM sing 194 n n 
C3D C4D HEM sing 195 n n 
C3D CAD HEM sing 196 n n 
C4D ND HEM sing 197 n n 
CMD HMD HEM sing 198 n n 
CMD HMDA HEM sing 199 n n 
CMD HMDB HEM sing 200 n n 
CAD CBD HEM sing 201 n n 
CAD HAD HEM sing 202 n n 
CAD HADA HEM sing 203 n n 
CBD CGD HEM sing 204 n n 
CBD HBD HEM sing 205 n n 
CBD HBDA HEM sing 206 n n 
CGD O1D HEM doub 207 n n 
CGD O2D HEM sing 208 n n 
O2A H2A HEM sing 209 n n 
O2D H2D HEM sing 210 n n 
FE NA HEM sing 211 n n 
FE NB HEM sing 212 n n 
FE NC HEM sing 213 n n 
FE ND HEM sing 214 n n 
#
_atom_sites.entry_id                     3I9U 
_atom_sites.fract_transf_matrix[1][1]    0.015179 
_atom_sites.fract_transf_matrix[1][2]    0.008763 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 300 300 HEM HEM . 
C 3 DTU A 1 2001 2001 DTU DTU . 
D 4 HOH A 1 264 1 HOH HOH . 
D 4 HOH A 2 265 2 HOH HOH . 
D 4 HOH A 3 266 3 HOH HOH . 
D 4 HOH A 4 267 4 HOH HOH . 
D 4 HOH A 5 268 5 HOH HOH . 
D 4 HOH A 6 269 6 HOH HOH . 
D 4 HOH A 7 270 7 HOH HOH . 
D 4 HOH A 8 271 8 HOH HOH . 
D 4 HOH A 9 272 9 HOH HOH . 
D 4 HOH A 10 273 10 HOH HOH . 
D 4 HOH A 11 274 11 HOH HOH . 
D 4 HOH A 12 275 12 HOH HOH . 
D 4 HOH A 13 276 13 HOH HOH . 
D 4 HOH A 14 277 14 HOH HOH . 
D 4 HOH A 15 278 15 HOH HOH . 
D 4 HOH A 16 279 16 HOH HOH . 
D 4 HOH A 17 280 17 HOH HOH . 
D 4 HOH A 18 281 18 HOH HOH . 
D 4 HOH A 19 282 19 HOH HOH . 
D 4 HOH A 20 283 20 HOH HOH . 
D 4 HOH A 21 284 21 HOH HOH . 
D 4 HOH A 22 285 22 HOH HOH . 
D 4 HOH A 23 286 23 HOH HOH . 
D 4 HOH A 24 287 24 HOH HOH . 
D 4 HOH A 25 288 25 HOH HOH . 
D 4 HOH A 26 289 26 HOH HOH . 
D 4 HOH A 27 290 27 HOH HOH . 
D 4 HOH A 28 291 28 HOH HOH . 
D 4 HOH A 29 292 29 HOH HOH . 
D 4 HOH A 30 293 30 HOH HOH . 
D 4 HOH A 31 294 31 HOH HOH . 
D 4 HOH A 32 295 32 HOH HOH . 
D 4 HOH A 33 296 33 HOH HOH . 
D 4 HOH A 34 297 34 HOH HOH . 
D 4 HOH A 35 298 35 HOH HOH . 
D 4 HOH A 36 299 36 HOH HOH . 
D 4 HOH A 37 301 37 HOH HOH . 
D 4 HOH A 38 302 38 HOH HOH . 
D 4 HOH A 39 303 39 HOH HOH . 
D 4 HOH A 40 304 40 HOH HOH . 
D 4 HOH A 41 305 41 HOH HOH . 
D 4 HOH A 42 306 42 HOH HOH . 
D 4 HOH A 43 307 45 HOH HOH . 
D 4 HOH A 44 308 46 HOH HOH . 
D 4 HOH A 45 309 48 HOH HOH . 
D 4 HOH A 46 310 49 HOH HOH . 
D 4 HOH A 47 311 50 HOH HOH . 
D 4 HOH A 48 312 51 HOH HOH . 
D 4 HOH A 49 313 52 HOH HOH . 
D 4 HOH A 50 314 53 HOH HOH . 
D 4 HOH A 51 315 54 HOH HOH . 
D 4 HOH A 52 316 55 HOH HOH . 
D 4 HOH A 53 317 56 HOH HOH . 
D 4 HOH A 54 318 57 HOH HOH . 
D 4 HOH A 55 319 58 HOH HOH . 
D 4 HOH A 56 320 60 HOH HOH . 
D 4 HOH A 57 321 61 HOH HOH . 
D 4 HOH A 58 322 62 HOH HOH . 
D 4 HOH A 59 323 64 HOH HOH . 
D 4 HOH A 60 324 65 HOH HOH . 
D 4 HOH A 61 325 66 HOH HOH . 
D 4 HOH A 62 326 68 HOH HOH . 
D 4 HOH A 63 327 69 HOH HOH . 
D 4 HOH A 64 328 70 HOH HOH . 
D 4 HOH A 65 329 71 HOH HOH . 
D 4 HOH A 66 330 72 HOH HOH . 
D 4 HOH A 67 331 73 HOH HOH . 
D 4 HOH A 68 332 74 HOH HOH . 
D 4 HOH A 69 333 75 HOH HOH . 
D 4 HOH A 70 334 77 HOH HOH . 
D 4 HOH A 71 335 79 HOH HOH . 
D 4 HOH A 72 336 80 HOH HOH . 
D 4 HOH A 73 337 81 HOH HOH . 
D 4 HOH A 74 338 83 HOH HOH . 
D 4 HOH A 75 339 84 HOH HOH . 
D 4 HOH A 76 340 85 HOH HOH . 
D 4 HOH A 77 341 86 HOH HOH . 
D 4 HOH A 78 342 88 HOH HOH . 
D 4 HOH A 79 343 89 HOH HOH . 
D 4 HOH A 80 344 90 HOH HOH . 
D 4 HOH A 81 345 91 HOH HOH . 
D 4 HOH A 82 346 92 HOH HOH . 
D 4 HOH A 83 347 94 HOH HOH . 
D 4 HOH A 84 348 95 HOH HOH . 
D 4 HOH A 85 349 97 HOH HOH . 
D 4 HOH A 86 350 98 HOH HOH . 
D 4 HOH A 87 351 99 HOH HOH . 
D 4 HOH A 88 352 102 HOH HOH . 
D 4 HOH A 89 353 103 HOH HOH . 
D 4 HOH A 90 354 105 HOH HOH . 
D 4 HOH A 91 355 107 HOH HOH . 
D 4 HOH A 92 356 108 HOH HOH . 
D 4 HOH A 93 357 109 HOH HOH . 
D 4 HOH A 94 358 110 HOH HOH . 
D 4 HOH A 95 359 112 HOH HOH . 
D 4 HOH A 96 360 113 HOH HOH . 
D 4 HOH A 97 361 114 HOH HOH . 
D 4 HOH A 98 362 115 HOH HOH . 
D 4 HOH A 99 363 116 HOH HOH . 
D 4 HOH A 100 364 117 HOH HOH . 
D 4 HOH A 101 365 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -3.786 -25.757 -167.866 1 23.58 ? CHA HEM 300 A 1 
HETATM 2 C CHB HEM . . . B 2 -1.059 -27.558 -171.475 1 27.12 ? CHB HEM 300 A 1 
HETATM 3 C CHC HEM . . . B 2 0.28 -31.306 -168.669 1 27.57 ? CHC HEM 300 A 1 
HETATM 4 C CHD HEM . . . B 2 -3.005 -29.83 -165.416 1 20.54 ? CHD HEM 300 A 1 
HETATM 5 C C1A HEM . . . B 2 -3.161 -25.927 -169.086 1 25.36 ? C1A HEM 300 A 1 
HETATM 6 C C2A HEM . . . B 2 -3.285 -25.07 -170.257 1 28.1 ? C2A HEM 300 A 1 
HETATM 7 C C3A HEM . . . B 2 -2.514 -25.548 -171.225 1 29.02 ? C3A HEM 300 A 1 
HETATM 8 C C4A HEM . . . B 2 -1.884 -26.739 -170.721 1 27.94 ? C4A HEM 300 A 1 
HETATM 9 C CMA HEM . . . B 2 -2.322 -24.973 -172.669 1 31.56 ? CMA HEM 300 A 1 
HETATM 10 C CAA HEM . . . B 2 -4.112 -23.758 -170.33 1 32.23 ? CAA HEM 300 A 1 
HETATM 11 C CBA HEM . . . B 2 -3.145 -22.752 -169.701 1 42.15 ? CBA HEM 300 A 1 
HETATM 12 C CGA HEM . . . B 2 -3.651 -21.317 -169.672 1 50.37 ? CGA HEM 300 A 1 
HETATM 13 O O1A HEM . . . B 2 -4.162 -20.808 -170.716 1 54.96 ? O1A HEM 300 A 1 
HETATM 14 O O2A HEM . . . B 2 -3.508 -20.656 -168.602 1 53.63 ? O2A HEM 300 A 1 
HETATM 15 C C1B HEM . . . B 2 -0.507 -28.777 -171.079 1 29.21 ? C1B HEM 300 A 1 
HETATM 16 C C2B HEM . . . B 2 0.292 -29.696 -171.92 1 29.58 ? C2B HEM 300 A 1 
HETATM 17 C C3B HEM . . . B 2 0.638 -30.711 -171.101 1 30.76 ? C3B HEM 300 A 1 
HETATM 18 C C4B HEM . . . B 2 0.104 -30.469 -169.757 1 29.97 ? C4B HEM 300 A 1 
HETATM 19 C CMB HEM . . . B 2 0.61 -29.513 -173.446 1 26.96 ? CMB HEM 300 A 1 
HETATM 20 C CAB HEM . . . B 2 1.461 -31.974 -171.396 1 32.98 ? CAB HEM 300 A 1 
HETATM 21 C CBB HEM . . . B 2 2.597 -31.854 -172.071 1 38.21 ? CBB HEM 300 A 1 
HETATM 22 C C1C HEM . . . B 2 -0.472 -31.262 -167.539 1 25.26 ? C1C HEM 300 A 1 
HETATM 23 C C2C HEM . . . B 2 -0.509 -32.22 -166.441 1 25.02 ? C2C HEM 300 A 1 
HETATM 24 C C3C HEM . . . B 2 -1.454 -31.748 -165.601 1 23.7 ? C3C HEM 300 A 1 
HETATM 25 C C4C HEM . . . B 2 -2.02 -30.53 -166.089 1 21.61 ? C4C HEM 300 A 1 
HETATM 26 C CMC HEM . . . B 2 0.34 -33.508 -166.266 1 20.61 ? CMC HEM 300 A 1 
HETATM 27 C CAC HEM . . . B 2 -1.909 -32.297 -164.238 1 22.3 ? CAC HEM 300 A 1 
HETATM 28 C CBC HEM . . . B 2 -1.872 -33.586 -164.009 1 28.11 ? CBC HEM 300 A 1 
HETATM 29 C C1D HEM . . . B 2 -3.519 -28.597 -165.682 1 21.96 ? C1D HEM 300 A 1 
HETATM 30 C C2D HEM . . . B 2 -4.44 -27.823 -164.844 1 20.54 ? C2D HEM 300 A 1 
HETATM 31 C C3D HEM . . . B 2 -4.644 -26.552 -165.63 1 21.5 ? C3D HEM 300 A 1 
HETATM 32 C C4D HEM . . . B 2 -3.863 -26.683 -166.843 1 22.14 ? C4D HEM 300 A 1 
HETATM 33 C CMD HEM . . . B 2 -5.067 -28.197 -163.497 1 18.61 ? CMD HEM 300 A 1 
HETATM 34 C CAD HEM . . . B 2 -5.54 -25.364 -165.28 1 21.48 ? CAD HEM 300 A 1 
HETATM 35 C CBD HEM . . . B 2 -4.651 -24.242 -164.76 1 24.89 ? CBD HEM 300 A 1 
HETATM 36 C CGD HEM . . . B 2 -5.662 -23.198 -164.318 1 28.64 ? CGD HEM 300 A 1 
HETATM 37 O O1D HEM . . . B 2 -5.802 -22.972 -163.091 1 28.23 ? O1D HEM 300 A 1 
HETATM 38 O O2D HEM . . . B 2 -6.35 -22.616 -165.199 1 31.47 ? O2D HEM 300 A 1 
HETATM 39 N NA HEM . . . B 2 -2.299 -26.927 -169.398 1 24.95 ? NA HEM 300 A 1 
HETATM 40 N NB HEM . . . B 2 -0.588 -29.289 -169.785 1 28.15 ? NB HEM 300 A 1 
HETATM 41 N NC HEM . . . B 2 -1.4 -30.263 -167.297 1 24.31 ? NC HEM 300 A 1 
HETATM 42 N ND HEM . . . B 2 -3.206 -27.88 -166.809 1 20.93 ? ND HEM 300 A 1 
HETATM 43 FE FE HEM . . . B 2 -1.885 -28.585 -168.283 1 24.08 ? FE HEM 300 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#