data_3IAF # _model_server_result.job_id TT9xbqRio51wuoG02bB3eA _model_server_result.datetime_utc '2024-11-26 18:59:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":572}' # _entry.id 3IAF # _exptl.entry_id 3IAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IAF _cell.length_a 150.962 _cell.length_b 150.962 _cell.length_c 195.56 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 27 A GLY 27 1_555 A N SEP 28 A SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 28 A SEP 28 1_555 A N HIS 29 A HIS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLY 27 B GLY 27 1_555 B N SEP 28 B SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C SEP 28 B SEP 28 1_555 B N HIS 29 B HIS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 C C GLY 27 C GLY 27 1_555 C N SEP 28 C SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C C SEP 28 C SEP 28 1_555 C N HIS 29 C HIS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 D C GLY 27 D GLY 27 1_555 D N SEP 28 D SEP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 D C SEP 28 D SEP 28 1_555 D N HIS 29 D HIS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 448 A ASP 448 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc2 A OD1 ASN 475 A ASN 475 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc3 A O SER 477 A SER 477 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc4 E O3A TPP . A TPP 571 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc5 E O1B TPP . A TPP 571 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc6 E O2A TPP . A TPP 571 1_555 F MG MG . A MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc7 B OD1 ASP 448 B ASP 448 1_555 H MG MG . B MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc8 B OD1 ASN 475 B ASN 475 1_555 H MG MG . B MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc9 B O SER 477 B SER 477 1_555 H MG MG . B MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc10 G O2A TPP . B TPP 571 1_555 H MG MG . B MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 G O1B TPP . B TPP 571 1_555 H MG MG . B MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc12 C OD1 ASP 448 C ASP 448 1_555 J MG MG . C MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc13 C OD1 ASN 475 C ASN 475 1_555 J MG MG . C MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc14 C O SER 477 C SER 477 1_555 J MG MG . C MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc15 I O2A TPP . C TPP 571 1_555 J MG MG . C MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc16 I O1B TPP . C TPP 571 1_555 J MG MG . C MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc17 D OD1 ASP 448 D ASP 448 1_555 L MG MG . D MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc18 D OD1 ASN 475 D ASN 475 1_555 L MG MG . D MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc19 D O SER 477 D SER 477 1_555 L MG MG . D MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc20 K O2A TPP . D TPP 571 1_555 L MG MG . D MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc21 K O1B TPP . D TPP 571 1_555 L MG MG . D MG 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IAF _atom_sites.fract_transf_matrix[1][1] 0.006624 _atom_sites.fract_transf_matrix[1][2] 0.003824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TPP A 1 571 1 TPP TPP . F 3 MG A 1 572 1 MG MG . G 2 TPP B 1 571 1 TPP TPP . H 3 MG B 1 572 1 MG MG . I 2 TPP C 1 571 1 TPP TPP . J 3 MG C 1 572 1 MG MG . K 2 TPP D 1 571 1 TPP TPP . L 3 MG D 1 572 1 MG MG . M 4 HOH A 1 573 5 HOH HOH . M 4 HOH A 2 574 7 HOH HOH . M 4 HOH A 3 575 8 HOH HOH . M 4 HOH A 4 576 11 HOH HOH . M 4 HOH A 5 577 12 HOH HOH . M 4 HOH A 6 578 16 HOH HOH . M 4 HOH A 7 579 27 HOH HOH . M 4 HOH A 8 580 37 HOH HOH . M 4 HOH A 9 581 54 HOH HOH . M 4 HOH A 10 582 58 HOH HOH . M 4 HOH A 11 583 68 HOH HOH . M 4 HOH A 12 584 75 HOH HOH . M 4 HOH A 13 585 77 HOH HOH . M 4 HOH A 14 586 92 HOH HOH . M 4 HOH A 15 587 96 HOH HOH . M 4 HOH A 16 588 104 HOH HOH . M 4 HOH A 17 589 106 HOH HOH . M 4 HOH A 18 590 111 HOH HOH . M 4 HOH A 19 591 135 HOH HOH . M 4 HOH A 20 592 136 HOH HOH . M 4 HOH A 21 593 147 HOH HOH . M 4 HOH A 22 594 160 HOH HOH . M 4 HOH A 23 595 166 HOH HOH . M 4 HOH A 24 596 170 HOH HOH . M 4 HOH A 25 597 172 HOH HOH . M 4 HOH A 26 598 176 HOH HOH . M 4 HOH A 27 599 177 HOH HOH . M 4 HOH A 28 600 186 HOH HOH . M 4 HOH A 29 601 187 HOH HOH . M 4 HOH A 30 602 192 HOH HOH . M 4 HOH A 31 603 194 HOH HOH . M 4 HOH A 32 604 197 HOH HOH . M 4 HOH A 33 605 198 HOH HOH . M 4 HOH A 34 606 206 HOH HOH . M 4 HOH A 35 607 208 HOH HOH . M 4 HOH A 36 608 220 HOH HOH . M 4 HOH A 37 609 222 HOH HOH . M 4 HOH A 38 610 232 HOH HOH . M 4 HOH A 39 611 235 HOH HOH . M 4 HOH A 40 612 239 HOH HOH . M 4 HOH A 41 613 241 HOH HOH . M 4 HOH A 42 614 242 HOH HOH . M 4 HOH A 43 615 249 HOH HOH . M 4 HOH A 44 616 250 HOH HOH . M 4 HOH A 45 617 256 HOH HOH . M 4 HOH A 46 618 263 HOH HOH . M 4 HOH A 47 619 265 HOH HOH . N 4 HOH B 1 573 2 HOH HOH . N 4 HOH B 2 574 19 HOH HOH . N 4 HOH B 3 575 30 HOH HOH . N 4 HOH B 4 576 36 HOH HOH . N 4 HOH B 5 577 42 HOH HOH . N 4 HOH B 6 578 60 HOH HOH . N 4 HOH B 7 579 67 HOH HOH . N 4 HOH B 8 580 80 HOH HOH . N 4 HOH B 9 581 99 HOH HOH . N 4 HOH B 10 582 107 HOH HOH . N 4 HOH B 11 583 128 HOH HOH . N 4 HOH B 12 584 129 HOH HOH . N 4 HOH B 13 585 133 HOH HOH . N 4 HOH B 14 586 139 HOH HOH . N 4 HOH B 15 587 140 HOH HOH . N 4 HOH B 16 588 154 HOH HOH . N 4 HOH B 17 589 155 HOH HOH . N 4 HOH B 18 590 188 HOH HOH . N 4 HOH B 19 591 217 HOH HOH . N 4 HOH B 20 592 218 HOH HOH . N 4 HOH B 21 593 219 HOH HOH . N 4 HOH B 22 594 223 HOH HOH . N 4 HOH B 23 595 225 HOH HOH . N 4 HOH B 24 596 234 HOH HOH . N 4 HOH B 25 597 247 HOH HOH . N 4 HOH B 26 598 253 HOH HOH . N 4 HOH B 27 599 255 HOH HOH . N 4 HOH B 28 600 259 HOH HOH . N 4 HOH B 29 601 261 HOH HOH . N 4 HOH B 30 602 270 HOH HOH . O 4 HOH C 1 573 6 HOH HOH . O 4 HOH C 2 574 9 HOH HOH . O 4 HOH C 3 575 13 HOH HOH . O 4 HOH C 4 576 17 HOH HOH . O 4 HOH C 5 577 28 HOH HOH . O 4 HOH C 6 578 32 HOH HOH . O 4 HOH C 7 579 33 HOH HOH . O 4 HOH C 8 580 44 HOH HOH . O 4 HOH C 9 581 48 HOH HOH . O 4 HOH C 10 582 50 HOH HOH . O 4 HOH C 11 583 51 HOH HOH . O 4 HOH C 12 584 52 HOH HOH . O 4 HOH C 13 585 55 HOH HOH . O 4 HOH C 14 586 70 HOH HOH . O 4 HOH C 15 587 79 HOH HOH . O 4 HOH C 16 588 81 HOH HOH . O 4 HOH C 17 589 86 HOH HOH . O 4 HOH C 18 590 87 HOH HOH . O 4 HOH C 19 591 88 HOH HOH . O 4 HOH C 20 592 89 HOH HOH . O 4 HOH C 21 593 94 HOH HOH . O 4 HOH C 22 594 95 HOH HOH . O 4 HOH C 23 595 97 HOH HOH . O 4 HOH C 24 596 100 HOH HOH . O 4 HOH C 25 597 101 HOH HOH . O 4 HOH C 26 598 105 HOH HOH . O 4 HOH C 27 599 112 HOH HOH . O 4 HOH C 28 600 114 HOH HOH . O 4 HOH C 29 601 116 HOH HOH . O 4 HOH C 30 602 120 HOH HOH . O 4 HOH C 31 603 121 HOH HOH . O 4 HOH C 32 604 124 HOH HOH . O 4 HOH C 33 605 141 HOH HOH . O 4 HOH C 34 606 151 HOH HOH . O 4 HOH C 35 607 152 HOH HOH . O 4 HOH C 36 608 153 HOH HOH . O 4 HOH C 37 609 156 HOH HOH . O 4 HOH C 38 610 159 HOH HOH . O 4 HOH C 39 611 165 HOH HOH . O 4 HOH C 40 612 168 HOH HOH . O 4 HOH C 41 613 169 HOH HOH . O 4 HOH C 42 614 175 HOH HOH . O 4 HOH C 43 615 178 HOH HOH . O 4 HOH C 44 616 180 HOH HOH . O 4 HOH C 45 617 183 HOH HOH . O 4 HOH C 46 618 184 HOH HOH . O 4 HOH C 47 619 185 HOH HOH . O 4 HOH C 48 620 189 HOH HOH . O 4 HOH C 49 621 199 HOH HOH . O 4 HOH C 50 622 210 HOH HOH . O 4 HOH C 51 623 211 HOH HOH . O 4 HOH C 52 624 216 HOH HOH . O 4 HOH C 53 625 240 HOH HOH . O 4 HOH C 54 626 244 HOH HOH . O 4 HOH C 55 627 252 HOH HOH . O 4 HOH C 56 628 260 HOH HOH . O 4 HOH C 57 629 268 HOH HOH . P 4 HOH D 1 573 15 HOH HOH . P 4 HOH D 2 574 20 HOH HOH . P 4 HOH D 3 575 21 HOH HOH . P 4 HOH D 4 576 24 HOH HOH . P 4 HOH D 5 577 39 HOH HOH . P 4 HOH D 6 578 40 HOH HOH . P 4 HOH D 7 579 43 HOH HOH . P 4 HOH D 8 580 47 HOH HOH . P 4 HOH D 9 581 53 HOH HOH . P 4 HOH D 10 582 56 HOH HOH . P 4 HOH D 11 583 57 HOH HOH . P 4 HOH D 12 584 59 HOH HOH . P 4 HOH D 13 585 61 HOH HOH . P 4 HOH D 14 586 66 HOH HOH . P 4 HOH D 15 587 71 HOH HOH . P 4 HOH D 16 588 78 HOH HOH . P 4 HOH D 17 589 82 HOH HOH . P 4 HOH D 18 590 84 HOH HOH . P 4 HOH D 19 591 85 HOH HOH . P 4 HOH D 20 592 90 HOH HOH . P 4 HOH D 21 593 93 HOH HOH . P 4 HOH D 22 594 98 HOH HOH . P 4 HOH D 23 595 108 HOH HOH . P 4 HOH D 24 596 115 HOH HOH . P 4 HOH D 25 597 125 HOH HOH . P 4 HOH D 26 598 130 HOH HOH . P 4 HOH D 27 599 142 HOH HOH . P 4 HOH D 28 600 143 HOH HOH . P 4 HOH D 29 601 145 HOH HOH . P 4 HOH D 30 602 148 HOH HOH . P 4 HOH D 31 603 150 HOH HOH . P 4 HOH D 32 604 157 HOH HOH . P 4 HOH D 33 605 163 HOH HOH . P 4 HOH D 34 606 171 HOH HOH . P 4 HOH D 35 607 190 HOH HOH . P 4 HOH D 36 608 191 HOH HOH . P 4 HOH D 37 609 193 HOH HOH . P 4 HOH D 38 610 196 HOH HOH . P 4 HOH D 39 611 200 HOH HOH . P 4 HOH D 40 612 201 HOH HOH . P 4 HOH D 41 613 202 HOH HOH . P 4 HOH D 42 614 204 HOH HOH . P 4 HOH D 43 615 209 HOH HOH . P 4 HOH D 44 616 221 HOH HOH . P 4 HOH D 45 617 226 HOH HOH . P 4 HOH D 46 618 227 HOH HOH . P 4 HOH D 47 619 236 HOH HOH . P 4 HOH D 48 620 266 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.146 _atom_site.Cartn_y -50.079 _atom_site.Cartn_z -32.358 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 572 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 442 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #