data_3IAG # _model_server_result.job_id 3qqf7uv03chkqbur8MQ0cw _model_server_result.datetime_utc '2025-06-27 09:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":17}' # _entry.id 3IAG # _exptl.entry_id 3IAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.146 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description Xylitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IAG _cell.length_a 63.451 _cell.length_b 93.137 _cell.length_c 112.569 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DT 3 A DT 3 1_555 B N1 DA 15 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 3 A DT 3 1_555 B N6 DA 15 B DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 4 A DC 4 1_555 B N1 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 4 A DC 4 1_555 B O6 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 4 A DC 4 1_555 B N2 DG 14 B DG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 5 A DT 5 1_555 B N1 DA 13 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 5 A DT 5 1_555 B N6 DA 13 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 6 A DT 6 1_555 B N1 DA 12 B DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 6 A DT 6 1_555 B N6 DA 12 B DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 7 A DT 7 1_555 B N1 DA 11 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 7 A DT 7 1_555 B N6 DA 11 B DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 8 A DC 8 1_555 B N1 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 8 A DC 8 1_555 B O6 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 8 A DC 8 1_555 B N2 DG 10 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 9 A DA 9 1_555 B N3 DT 9 B DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 9 A DA 9 1_555 B O4 DT 9 B DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 10 A DC 10 1_555 B N1 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 10 A DC 10 1_555 B O6 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 10 A DC 10 1_555 B N2 DG 8 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 11 A DA 11 1_555 B N3 DT 7 B DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 11 A DA 11 1_555 B O4 DT 7 B DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 12 A DC 12 1_555 B N1 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 12 A DC 12 1_555 B O6 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 12 A DC 12 1_555 B N2 DG 6 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 13 A DG 13 1_555 B N3 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 13 A DG 13 1_555 B O2 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 13 A DG 13 1_555 B N4 DC 5 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DA 14 A DA 14 1_555 B N3 DT 4 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 DA 14 A DA 14 1_555 B O4 DT 4 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DT 15 A DT 15 1_555 B N1 DA 3 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O4 DT 15 A DT 15 1_555 B N6 DA 3 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H12 O5' _chem_comp.formula_weight 152.146 _chem_comp.id XYL _chem_comp.mon_nstd_flag . _chem_comp.name Xylitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-Xylitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XYL sing 534 n n C1 O1 XYL sing 535 n n C1 H11 XYL sing 536 n n C1 H12 XYL sing 537 n n C2 C3 XYL sing 538 n n C2 O2 XYL sing 539 n n C2 H2 XYL sing 540 n n C3 C4 XYL sing 541 n n C3 O3 XYL sing 542 n n C3 H3 XYL sing 543 n n C4 C5 XYL sing 544 n n C4 O4 XYL sing 545 n n C4 H4 XYL sing 546 n n C5 O5 XYL sing 547 n n C5 H51 XYL sing 548 n n C5 H52 XYL sing 549 n n O1 HO1 XYL sing 550 n n O2 HO2 XYL sing 551 n n O3 HO3 XYL sing 552 n n O4 HO4 XYL sing 553 n n O5 HO5 XYL sing 554 n n # _atom_sites.entry_id 3IAG _atom_sites.fract_transf_matrix[1][1] 0.01576 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 16 5 EDO EDO . E 5 XYL A 1 17 1 XYL XYL . F 4 EDO C 1 1 1 EDO EDO . G 4 EDO C 1 2 2 EDO EDO . H 4 EDO C 1 3 3 EDO EDO . I 4 EDO C 1 4 4 EDO EDO . J 4 EDO C 1 6 6 EDO EDO . K 6 HOH A 1 35 35 HOH HOH . K 6 HOH A 2 84 84 HOH HOH . L 6 HOH B 1 42 42 HOH HOH . L 6 HOH B 2 155 155 HOH HOH . L 6 HOH B 3 158 158 HOH HOH . M 6 HOH C 1 5 5 HOH HOH . M 6 HOH C 2 7 7 HOH HOH . M 6 HOH C 3 8 8 HOH HOH . M 6 HOH C 4 9 9 HOH HOH . M 6 HOH C 5 10 10 HOH HOH . M 6 HOH C 6 11 11 HOH HOH . M 6 HOH C 7 12 12 HOH HOH . M 6 HOH C 8 13 13 HOH HOH . M 6 HOH C 9 14 14 HOH HOH . M 6 HOH C 10 15 15 HOH HOH . M 6 HOH C 11 16 16 HOH HOH . M 6 HOH C 12 17 17 HOH HOH . M 6 HOH C 13 18 18 HOH HOH . M 6 HOH C 14 19 19 HOH HOH . M 6 HOH C 15 20 20 HOH HOH . M 6 HOH C 16 21 21 HOH HOH . M 6 HOH C 17 22 22 HOH HOH . M 6 HOH C 18 23 23 HOH HOH . M 6 HOH C 19 24 24 HOH HOH . M 6 HOH C 20 25 25 HOH HOH . M 6 HOH C 21 26 26 HOH HOH . M 6 HOH C 22 27 27 HOH HOH . M 6 HOH C 23 28 28 HOH HOH . M 6 HOH C 24 29 29 HOH HOH . M 6 HOH C 25 30 30 HOH HOH . M 6 HOH C 26 31 31 HOH HOH . M 6 HOH C 27 32 32 HOH HOH . M 6 HOH C 28 33 33 HOH HOH . M 6 HOH C 29 34 34 HOH HOH . M 6 HOH C 30 36 36 HOH HOH . M 6 HOH C 31 37 37 HOH HOH . M 6 HOH C 32 38 38 HOH HOH . M 6 HOH C 33 39 39 HOH HOH . M 6 HOH C 34 40 40 HOH HOH . M 6 HOH C 35 41 41 HOH HOH . M 6 HOH C 36 43 43 HOH HOH . M 6 HOH C 37 44 44 HOH HOH . M 6 HOH C 38 45 45 HOH HOH . M 6 HOH C 39 46 46 HOH HOH . M 6 HOH C 40 47 47 HOH HOH . M 6 HOH C 41 48 48 HOH HOH . M 6 HOH C 42 49 49 HOH HOH . M 6 HOH C 43 50 50 HOH HOH . M 6 HOH C 44 51 51 HOH HOH . M 6 HOH C 45 52 52 HOH HOH . M 6 HOH C 46 475 1 HOH HOH . M 6 HOH C 47 476 2 HOH HOH . M 6 HOH C 48 477 3 HOH HOH . M 6 HOH C 49 478 4 HOH HOH . M 6 HOH C 50 479 6 HOH HOH . M 6 HOH C 51 480 53 HOH HOH . M 6 HOH C 52 481 54 HOH HOH . M 6 HOH C 53 482 55 HOH HOH . M 6 HOH C 54 483 56 HOH HOH . M 6 HOH C 55 484 57 HOH HOH . M 6 HOH C 56 485 58 HOH HOH . M 6 HOH C 57 486 59 HOH HOH . M 6 HOH C 58 487 60 HOH HOH . M 6 HOH C 59 488 61 HOH HOH . M 6 HOH C 60 489 62 HOH HOH . M 6 HOH C 61 490 63 HOH HOH . M 6 HOH C 62 491 64 HOH HOH . M 6 HOH C 63 492 65 HOH HOH . M 6 HOH C 64 493 66 HOH HOH . M 6 HOH C 65 494 67 HOH HOH . M 6 HOH C 66 495 68 HOH HOH . M 6 HOH C 67 496 69 HOH HOH . M 6 HOH C 68 497 70 HOH HOH . M 6 HOH C 69 498 71 HOH HOH . M 6 HOH C 70 499 72 HOH HOH . M 6 HOH C 71 500 73 HOH HOH . M 6 HOH C 72 501 74 HOH HOH . M 6 HOH C 73 502 75 HOH HOH . M 6 HOH C 74 503 76 HOH HOH . M 6 HOH C 75 504 77 HOH HOH . M 6 HOH C 76 505 78 HOH HOH . M 6 HOH C 77 506 79 HOH HOH . M 6 HOH C 78 507 80 HOH HOH . M 6 HOH C 79 508 81 HOH HOH . M 6 HOH C 80 509 82 HOH HOH . M 6 HOH C 81 510 83 HOH HOH . M 6 HOH C 82 511 85 HOH HOH . M 6 HOH C 83 512 86 HOH HOH . M 6 HOH C 84 513 87 HOH HOH . M 6 HOH C 85 514 88 HOH HOH . M 6 HOH C 86 515 89 HOH HOH . M 6 HOH C 87 516 90 HOH HOH . M 6 HOH C 88 517 91 HOH HOH . M 6 HOH C 89 518 92 HOH HOH . M 6 HOH C 90 519 93 HOH HOH . M 6 HOH C 91 520 94 HOH HOH . M 6 HOH C 92 521 95 HOH HOH . M 6 HOH C 93 522 96 HOH HOH . M 6 HOH C 94 523 97 HOH HOH . M 6 HOH C 95 524 98 HOH HOH . M 6 HOH C 96 525 99 HOH HOH . M 6 HOH C 97 526 100 HOH HOH . M 6 HOH C 98 527 101 HOH HOH . M 6 HOH C 99 528 102 HOH HOH . M 6 HOH C 100 529 103 HOH HOH . M 6 HOH C 101 530 104 HOH HOH . M 6 HOH C 102 531 105 HOH HOH . M 6 HOH C 103 532 106 HOH HOH . M 6 HOH C 104 533 107 HOH HOH . M 6 HOH C 105 534 108 HOH HOH . M 6 HOH C 106 535 109 HOH HOH . M 6 HOH C 107 536 110 HOH HOH . M 6 HOH C 108 537 111 HOH HOH . M 6 HOH C 109 538 112 HOH HOH . M 6 HOH C 110 539 113 HOH HOH . M 6 HOH C 111 540 114 HOH HOH . M 6 HOH C 112 541 115 HOH HOH . M 6 HOH C 113 542 116 HOH HOH . M 6 HOH C 114 543 117 HOH HOH . M 6 HOH C 115 544 118 HOH HOH . M 6 HOH C 116 545 119 HOH HOH . M 6 HOH C 117 546 120 HOH HOH . M 6 HOH C 118 547 121 HOH HOH . M 6 HOH C 119 548 122 HOH HOH . M 6 HOH C 120 549 123 HOH HOH . M 6 HOH C 121 550 124 HOH HOH . M 6 HOH C 122 551 125 HOH HOH . M 6 HOH C 123 552 126 HOH HOH . M 6 HOH C 124 553 127 HOH HOH . M 6 HOH C 125 554 128 HOH HOH . M 6 HOH C 126 555 129 HOH HOH . M 6 HOH C 127 556 130 HOH HOH . M 6 HOH C 128 557 131 HOH HOH . M 6 HOH C 129 558 132 HOH HOH . M 6 HOH C 130 559 133 HOH HOH . M 6 HOH C 131 560 134 HOH HOH . M 6 HOH C 132 561 135 HOH HOH . M 6 HOH C 133 562 136 HOH HOH . M 6 HOH C 134 563 137 HOH HOH . M 6 HOH C 135 564 138 HOH HOH . M 6 HOH C 136 565 139 HOH HOH . M 6 HOH C 137 566 140 HOH HOH . M 6 HOH C 138 567 141 HOH HOH . M 6 HOH C 139 568 142 HOH HOH . M 6 HOH C 140 569 143 HOH HOH . M 6 HOH C 141 570 144 HOH HOH . M 6 HOH C 142 571 145 HOH HOH . M 6 HOH C 143 572 146 HOH HOH . M 6 HOH C 144 573 147 HOH HOH . M 6 HOH C 145 574 148 HOH HOH . M 6 HOH C 146 575 149 HOH HOH . M 6 HOH C 147 576 150 HOH HOH . M 6 HOH C 148 577 151 HOH HOH . M 6 HOH C 149 578 152 HOH HOH . M 6 HOH C 150 579 153 HOH HOH . M 6 HOH C 151 580 154 HOH HOH . M 6 HOH C 152 581 156 HOH HOH . M 6 HOH C 153 582 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYL . . . E 5 19.66 34.969 57.417 1 78.11 ? C1 XYL 17 A 1 HETATM 2 C C2 XYL . . . E 5 19.162 36.069 58.351 1 78.15 ? C2 XYL 17 A 1 HETATM 3 C C3 XYL . . . E 5 17.813 35.603 58.859 1 77.19 ? C3 XYL 17 A 1 HETATM 4 C C4 XYL . . . E 5 17.552 34.245 58.192 1 77.15 ? C4 XYL 17 A 1 HETATM 5 C C5 XYL . . . E 5 16.37 34.216 57.199 1 75.29 ? C5 XYL 17 A 1 HETATM 6 O O1 XYL . . . E 5 19.59 35.491 56.086 1 75.76 ? O1 XYL 17 A 1 HETATM 7 O O2 XYL . . . E 5 20.095 36.312 59.412 1 77.8 ? O2 XYL 17 A 1 HETATM 8 O O3 XYL . . . E 5 16.845 36.599 58.522 1 76.6 ? O3 XYL 17 A 1 HETATM 9 O O4 XYL . . . E 5 18.784 33.841 57.558 1 77.18 ? O4 XYL 17 A 1 HETATM 10 O O5 XYL . . . E 5 15.55 33.013 57.438 1 74.85 ? O5 XYL 17 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #