data_3IB2 # _model_server_result.job_id c4XQ5_jskFNwraDMRebj3w _model_server_result.datetime_utc '2024-11-07 22:46:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ib2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":692}' # _entry.id 3IB2 # _exptl.entry_id 3IB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.75 _cell.angle_gamma 90 _cell.entry_id 3IB2 _cell.length_a 63.319 _cell.length_b 50.48 _cell.length_c 66.116 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1 NAG 2 n B NAG 2 B 2 NAG A 2 NAG 2 n B MAN 3 B 3 MAN A 3 MAN 3 n C NAG 1 C 1 NAG A 687 NAG 3 n C NAG 2 C 2 NAG A 688 NAG 3 n D NAG 1 D 1 NAG A 689 NAG 3 n D NAG 2 D 2 NAG A 690 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 348 1_555 A SG CYS 39 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 17 A CYS 358 1_555 A SG CYS 30 A CYS 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 64 A CYS 405 1_555 A SG CYS 343 A CYS 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? disulf ? disulf4 A SG CYS 84 A CYS 425 1_555 A SG CYS 306 A CYS 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 116 A CYS 457 1_555 A SG CYS 191 A CYS 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf6 A SG CYS 140 A CYS 481 1_555 A SG CYS 334 A CYS 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 150 A CYS 491 1_555 A SG CYS 164 A CYS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 A SG CYS 161 A CYS 502 1_555 A SG CYS 174 A CYS 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf9 A SG CYS 232 A CYS 573 1_555 A SG CYS 246 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf10 A SG CYS 284 A CYS 625 1_555 A SG CYS 289 A CYS 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 27 A ASN 368 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 135 A ASN 476 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 A ND2 ASN 204 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 I ZN ZN . A ZN 4 1_555 K O HOH . A HOH 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 I ZN ZN . A ZN 4 1_555 K O HOH . A HOH 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? metalc ? metalc3 I ZN ZN . A ZN 4 1_555 A NE2 HIS 247 A HIS 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A OD1 ASP 54 A ASP 395 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.871 ? metalc ? metalc5 A OH TYR 92 A TYR 433 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc6 A OH TYR 185 A TYR 526 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc7 A NE2 HIS 254 A HIS 595 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 A OE2 GLU 318 A GLU 659 1_555 H ZN ZN . A ZN 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc9 A OE1 GLU 318 A GLU 659 1_555 H ZN ZN . A ZN 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc10 G O1 CO3 . A CO3 691 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 G O2 CO3 . A CO3 691 1_555 F FE FE . A FE 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IB2 _atom_sites.fract_transf_matrix[1][1] 0.015793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 IBP A 1 3960 3960 IBP IBP . F 5 FE A 1 1001 1001 FE FE . G 6 CO3 A 1 691 691 CO3 CO3 . H 7 ZN A 1 692 692 ZN ZN . I 7 ZN A 1 4 4 ZN ZN . J 8 SO4 A 1 5 5 SO4 SO4 . K 9 HOH A 1 6 6 HOH HOH . K 9 HOH A 2 7 7 HOH HOH . K 9 HOH A 3 8 8 HOH HOH . K 9 HOH A 4 9 9 HOH HOH . K 9 HOH A 5 10 10 HOH HOH . K 9 HOH A 6 11 11 HOH HOH . K 9 HOH A 7 12 12 HOH HOH . K 9 HOH A 8 13 13 HOH HOH . K 9 HOH A 9 14 14 HOH HOH . K 9 HOH A 10 15 15 HOH HOH . K 9 HOH A 11 16 16 HOH HOH . K 9 HOH A 12 17 17 HOH HOH . K 9 HOH A 13 18 18 HOH HOH . K 9 HOH A 14 19 19 HOH HOH . K 9 HOH A 15 20 20 HOH HOH . K 9 HOH A 16 21 21 HOH HOH . K 9 HOH A 17 22 22 HOH HOH . K 9 HOH A 18 23 23 HOH HOH . K 9 HOH A 19 24 24 HOH HOH . K 9 HOH A 20 25 25 HOH HOH . K 9 HOH A 21 26 26 HOH HOH . K 9 HOH A 22 27 27 HOH HOH . K 9 HOH A 23 28 28 HOH HOH . K 9 HOH A 24 29 29 HOH HOH . K 9 HOH A 25 30 30 HOH HOH . K 9 HOH A 26 31 31 HOH HOH . K 9 HOH A 27 32 32 HOH HOH . K 9 HOH A 28 33 33 HOH HOH . K 9 HOH A 29 34 34 HOH HOH . K 9 HOH A 30 35 35 HOH HOH . K 9 HOH A 31 36 36 HOH HOH . K 9 HOH A 32 37 37 HOH HOH . K 9 HOH A 33 39 39 HOH HOH . K 9 HOH A 34 40 40 HOH HOH . K 9 HOH A 35 41 41 HOH HOH . K 9 HOH A 36 42 42 HOH HOH . K 9 HOH A 37 43 43 HOH HOH . K 9 HOH A 38 44 44 HOH HOH . K 9 HOH A 39 46 46 HOH HOH . K 9 HOH A 40 47 47 HOH HOH . K 9 HOH A 41 49 49 HOH HOH . K 9 HOH A 42 50 50 HOH HOH . K 9 HOH A 43 51 51 HOH HOH . K 9 HOH A 44 52 52 HOH HOH . K 9 HOH A 45 54 54 HOH HOH . K 9 HOH A 46 55 55 HOH HOH . K 9 HOH A 47 57 57 HOH HOH . K 9 HOH A 48 58 58 HOH HOH . K 9 HOH A 49 59 59 HOH HOH . K 9 HOH A 50 61 61 HOH HOH . K 9 HOH A 51 62 62 HOH HOH . K 9 HOH A 52 63 63 HOH HOH . K 9 HOH A 53 64 64 HOH HOH . K 9 HOH A 54 65 65 HOH HOH . K 9 HOH A 55 66 66 HOH HOH . K 9 HOH A 56 67 67 HOH HOH . K 9 HOH A 57 68 68 HOH HOH . K 9 HOH A 58 69 69 HOH HOH . K 9 HOH A 59 70 70 HOH HOH . K 9 HOH A 60 71 71 HOH HOH . K 9 HOH A 61 72 72 HOH HOH . K 9 HOH A 62 73 73 HOH HOH . K 9 HOH A 63 76 76 HOH HOH . K 9 HOH A 64 79 79 HOH HOH . K 9 HOH A 65 80 80 HOH HOH . K 9 HOH A 66 82 82 HOH HOH . K 9 HOH A 67 83 83 HOH HOH . K 9 HOH A 68 84 84 HOH HOH . K 9 HOH A 69 86 86 HOH HOH . K 9 HOH A 70 87 87 HOH HOH . K 9 HOH A 71 89 89 HOH HOH . K 9 HOH A 72 90 90 HOH HOH . K 9 HOH A 73 91 91 HOH HOH . K 9 HOH A 74 92 92 HOH HOH . K 9 HOH A 75 93 93 HOH HOH . K 9 HOH A 76 94 94 HOH HOH . K 9 HOH A 77 95 95 HOH HOH . K 9 HOH A 78 96 96 HOH HOH . K 9 HOH A 79 98 98 HOH HOH . K 9 HOH A 80 99 99 HOH HOH . K 9 HOH A 81 101 101 HOH HOH . K 9 HOH A 82 102 102 HOH HOH . K 9 HOH A 83 103 103 HOH HOH . K 9 HOH A 84 107 107 HOH HOH . K 9 HOH A 85 108 108 HOH HOH . K 9 HOH A 86 120 120 HOH HOH . K 9 HOH A 87 121 121 HOH HOH . K 9 HOH A 88 123 123 HOH HOH . K 9 HOH A 89 126 126 HOH HOH . K 9 HOH A 90 131 131 HOH HOH . K 9 HOH A 91 135 135 HOH HOH . K 9 HOH A 92 137 137 HOH HOH . K 9 HOH A 93 142 142 HOH HOH . K 9 HOH A 94 145 145 HOH HOH . K 9 HOH A 95 147 147 HOH HOH . K 9 HOH A 96 149 149 HOH HOH . K 9 HOH A 97 151 151 HOH HOH . K 9 HOH A 98 152 152 HOH HOH . K 9 HOH A 99 155 155 HOH HOH . K 9 HOH A 100 157 157 HOH HOH . K 9 HOH A 101 170 170 HOH HOH . K 9 HOH A 102 171 171 HOH HOH . K 9 HOH A 103 174 174 HOH HOH . K 9 HOH A 104 175 175 HOH HOH . K 9 HOH A 105 177 177 HOH HOH . K 9 HOH A 106 178 178 HOH HOH . K 9 HOH A 107 181 181 HOH HOH . K 9 HOH A 108 182 182 HOH HOH . K 9 HOH A 109 183 183 HOH HOH . K 9 HOH A 110 185 185 HOH HOH . K 9 HOH A 111 187 187 HOH HOH . K 9 HOH A 112 188 188 HOH HOH . K 9 HOH A 113 189 189 HOH HOH . K 9 HOH A 114 195 195 HOH HOH . K 9 HOH A 115 197 197 HOH HOH . K 9 HOH A 116 198 198 HOH HOH . K 9 HOH A 117 206 206 HOH HOH . K 9 HOH A 118 207 207 HOH HOH . K 9 HOH A 119 210 210 HOH HOH . K 9 HOH A 120 218 218 HOH HOH . K 9 HOH A 121 219 219 HOH HOH . K 9 HOH A 122 231 231 HOH HOH . K 9 HOH A 123 236 236 HOH HOH . K 9 HOH A 124 242 242 HOH HOH . K 9 HOH A 125 245 245 HOH HOH . K 9 HOH A 126 246 246 HOH HOH . K 9 HOH A 127 253 253 HOH HOH . K 9 HOH A 128 255 255 HOH HOH . K 9 HOH A 129 261 261 HOH HOH . K 9 HOH A 130 269 269 HOH HOH . K 9 HOH A 131 271 271 HOH HOH . K 9 HOH A 132 272 272 HOH HOH . K 9 HOH A 133 273 273 HOH HOH . K 9 HOH A 134 278 278 HOH HOH . K 9 HOH A 135 279 279 HOH HOH . K 9 HOH A 136 280 280 HOH HOH . K 9 HOH A 137 295 295 HOH HOH . K 9 HOH A 138 297 297 HOH HOH . K 9 HOH A 139 693 693 HOH HOH . K 9 HOH A 140 694 694 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 14.848 _atom_site.Cartn_y 22.862 _atom_site.Cartn_z 24.071 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 692 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #