data_3IBD # _model_server_result.job_id XGBvo01bBI8hjoaP3etsmw _model_server_result.datetime_utc '2024-11-28 13:24:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ibd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1006}' # _entry.id 3IBD # _exptl.entry_id 3IBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.082 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOCYANATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.51 _cell.angle_gamma 90 _cell.entry_id 3IBD _cell.length_a 89.573 _cell.length_b 55.74 _cell.length_c 99.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 436 1_555 B FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 B FE HEM . A HEM 500 1_555 C N1 CPZ . A CPZ 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C N S -1' _chem_comp.formula_weight 58.082 _chem_comp.id SCN _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOCYANATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C SCN sing 457 n n C N SCN trip 458 n n # _atom_sites.entry_id 3IBD _atom_sites.fract_transf_matrix[1][1] 0.011164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 500 500 HEM HEM . C 3 CPZ A 1 501 501 CPZ CPZ . D 4 CM5 A 1 1001 1001 CM5 CM5 . E 4 CM5 A 1 1002 1002 CM5 CM5 . F 5 SCN A 1 1003 1003 SCN SCN . G 5 SCN A 1 1004 1004 SCN SCN . H 5 SCN A 1 1005 1005 SCN SCN . I 5 SCN A 1 1006 1006 SCN SCN . J 6 HOH A 1 3 3 HOH HOH . J 6 HOH A 2 4 4 HOH HOH . J 6 HOH A 3 5 5 HOH HOH . J 6 HOH A 4 6 6 HOH HOH . J 6 HOH A 5 7 7 HOH HOH . J 6 HOH A 6 8 8 HOH HOH . J 6 HOH A 7 9 9 HOH HOH . J 6 HOH A 8 10 10 HOH HOH . J 6 HOH A 9 11 11 HOH HOH . J 6 HOH A 10 12 12 HOH HOH . J 6 HOH A 11 13 13 HOH HOH . J 6 HOH A 12 14 14 HOH HOH . J 6 HOH A 13 15 15 HOH HOH . J 6 HOH A 14 16 16 HOH HOH . J 6 HOH A 15 17 17 HOH HOH . J 6 HOH A 16 18 18 HOH HOH . J 6 HOH A 17 19 19 HOH HOH . J 6 HOH A 18 496 496 HOH HOH . J 6 HOH A 19 497 497 HOH HOH . J 6 HOH A 20 498 498 HOH HOH . J 6 HOH A 21 499 499 HOH HOH . J 6 HOH A 22 502 502 HOH HOH . J 6 HOH A 23 503 503 HOH HOH . J 6 HOH A 24 504 504 HOH HOH . J 6 HOH A 25 505 505 HOH HOH . J 6 HOH A 26 506 506 HOH HOH . J 6 HOH A 27 507 507 HOH HOH . J 6 HOH A 28 508 508 HOH HOH . J 6 HOH A 29 509 509 HOH HOH . J 6 HOH A 30 510 510 HOH HOH . J 6 HOH A 31 511 511 HOH HOH . J 6 HOH A 32 512 512 HOH HOH . J 6 HOH A 33 513 513 HOH HOH . J 6 HOH A 34 514 514 HOH HOH . J 6 HOH A 35 515 515 HOH HOH . J 6 HOH A 36 516 516 HOH HOH . J 6 HOH A 37 517 517 HOH HOH . J 6 HOH A 38 518 518 HOH HOH . J 6 HOH A 39 519 519 HOH HOH . J 6 HOH A 40 520 520 HOH HOH . J 6 HOH A 41 521 521 HOH HOH . J 6 HOH A 42 522 522 HOH HOH . J 6 HOH A 43 523 523 HOH HOH . J 6 HOH A 44 524 524 HOH HOH . J 6 HOH A 45 525 525 HOH HOH . J 6 HOH A 46 526 526 HOH HOH . J 6 HOH A 47 527 527 HOH HOH . J 6 HOH A 48 528 528 HOH HOH . J 6 HOH A 49 529 529 HOH HOH . J 6 HOH A 50 530 530 HOH HOH . J 6 HOH A 51 531 531 HOH HOH . J 6 HOH A 52 532 532 HOH HOH . J 6 HOH A 53 533 533 HOH HOH . J 6 HOH A 54 534 534 HOH HOH . J 6 HOH A 55 535 535 HOH HOH . J 6 HOH A 56 536 536 HOH HOH . J 6 HOH A 57 537 537 HOH HOH . J 6 HOH A 58 538 538 HOH HOH . J 6 HOH A 59 539 539 HOH HOH . J 6 HOH A 60 540 540 HOH HOH . J 6 HOH A 61 541 541 HOH HOH . J 6 HOH A 62 542 542 HOH HOH . J 6 HOH A 63 543 543 HOH HOH . J 6 HOH A 64 544 544 HOH HOH . J 6 HOH A 65 545 545 HOH HOH . J 6 HOH A 66 546 546 HOH HOH . J 6 HOH A 67 547 547 HOH HOH . J 6 HOH A 68 548 548 HOH HOH . J 6 HOH A 69 549 549 HOH HOH . J 6 HOH A 70 550 550 HOH HOH . J 6 HOH A 71 551 551 HOH HOH . J 6 HOH A 72 552 552 HOH HOH . J 6 HOH A 73 553 553 HOH HOH . J 6 HOH A 74 554 554 HOH HOH . J 6 HOH A 75 555 555 HOH HOH . J 6 HOH A 76 556 556 HOH HOH . J 6 HOH A 77 557 557 HOH HOH . J 6 HOH A 78 558 558 HOH HOH . J 6 HOH A 79 559 559 HOH HOH . J 6 HOH A 80 560 560 HOH HOH . J 6 HOH A 81 561 561 HOH HOH . J 6 HOH A 82 562 562 HOH HOH . J 6 HOH A 83 563 563 HOH HOH . J 6 HOH A 84 564 564 HOH HOH . J 6 HOH A 85 565 565 HOH HOH . J 6 HOH A 86 566 566 HOH HOH . J 6 HOH A 87 567 567 HOH HOH . J 6 HOH A 88 568 568 HOH HOH . J 6 HOH A 89 569 569 HOH HOH . J 6 HOH A 90 570 570 HOH HOH . J 6 HOH A 91 571 571 HOH HOH . J 6 HOH A 92 572 572 HOH HOH . J 6 HOH A 93 573 573 HOH HOH . J 6 HOH A 94 574 574 HOH HOH . J 6 HOH A 95 575 575 HOH HOH . J 6 HOH A 96 576 576 HOH HOH . J 6 HOH A 97 577 577 HOH HOH . J 6 HOH A 98 578 578 HOH HOH . J 6 HOH A 99 579 579 HOH HOH . J 6 HOH A 100 580 580 HOH HOH . J 6 HOH A 101 581 581 HOH HOH . J 6 HOH A 102 582 582 HOH HOH . J 6 HOH A 103 583 583 HOH HOH . J 6 HOH A 104 584 584 HOH HOH . J 6 HOH A 105 585 585 HOH HOH . J 6 HOH A 106 586 586 HOH HOH . J 6 HOH A 107 587 587 HOH HOH . J 6 HOH A 108 588 588 HOH HOH . J 6 HOH A 109 589 589 HOH HOH . J 6 HOH A 110 590 590 HOH HOH . J 6 HOH A 111 591 591 HOH HOH . J 6 HOH A 112 592 592 HOH HOH . J 6 HOH A 113 593 593 HOH HOH . J 6 HOH A 114 594 594 HOH HOH . J 6 HOH A 115 595 595 HOH HOH . J 6 HOH A 116 596 596 HOH HOH . J 6 HOH A 117 597 597 HOH HOH . J 6 HOH A 118 598 598 HOH HOH . J 6 HOH A 119 599 599 HOH HOH . J 6 HOH A 120 600 600 HOH HOH . J 6 HOH A 121 601 601 HOH HOH . J 6 HOH A 122 602 602 HOH HOH . J 6 HOH A 123 603 603 HOH HOH . J 6 HOH A 124 604 604 HOH HOH . J 6 HOH A 125 605 605 HOH HOH . J 6 HOH A 126 606 606 HOH HOH . J 6 HOH A 127 607 607 HOH HOH . J 6 HOH A 128 608 608 HOH HOH . J 6 HOH A 129 609 609 HOH HOH . J 6 HOH A 130 610 610 HOH HOH . J 6 HOH A 131 611 611 HOH HOH . J 6 HOH A 132 612 612 HOH HOH . J 6 HOH A 133 613 613 HOH HOH . J 6 HOH A 134 614 614 HOH HOH . J 6 HOH A 135 615 615 HOH HOH . J 6 HOH A 136 616 616 HOH HOH . J 6 HOH A 137 617 617 HOH HOH . J 6 HOH A 138 618 618 HOH HOH . J 6 HOH A 139 619 619 HOH HOH . J 6 HOH A 140 620 620 HOH HOH . J 6 HOH A 141 621 621 HOH HOH . J 6 HOH A 142 622 622 HOH HOH . J 6 HOH A 143 623 623 HOH HOH . J 6 HOH A 144 624 624 HOH HOH . J 6 HOH A 145 625 625 HOH HOH . J 6 HOH A 146 626 626 HOH HOH . J 6 HOH A 147 627 627 HOH HOH . J 6 HOH A 148 628 628 HOH HOH . J 6 HOH A 149 629 629 HOH HOH . J 6 HOH A 150 630 630 HOH HOH . J 6 HOH A 151 631 631 HOH HOH . J 6 HOH A 152 632 632 HOH HOH . J 6 HOH A 153 633 633 HOH HOH . J 6 HOH A 154 634 634 HOH HOH . J 6 HOH A 155 635 635 HOH HOH . J 6 HOH A 156 636 636 HOH HOH . J 6 HOH A 157 637 637 HOH HOH . J 6 HOH A 158 638 638 HOH HOH . J 6 HOH A 159 639 639 HOH HOH . J 6 HOH A 160 640 640 HOH HOH . J 6 HOH A 161 641 641 HOH HOH . J 6 HOH A 162 642 642 HOH HOH . J 6 HOH A 163 643 643 HOH HOH . J 6 HOH A 164 644 644 HOH HOH . J 6 HOH A 165 645 645 HOH HOH . J 6 HOH A 166 646 646 HOH HOH . J 6 HOH A 167 647 647 HOH HOH . J 6 HOH A 168 648 648 HOH HOH . J 6 HOH A 169 649 649 HOH HOH . J 6 HOH A 170 650 650 HOH HOH . J 6 HOH A 171 651 651 HOH HOH . J 6 HOH A 172 652 652 HOH HOH . J 6 HOH A 173 653 653 HOH HOH . J 6 HOH A 174 654 654 HOH HOH . J 6 HOH A 175 655 1 HOH HOH . J 6 HOH A 176 656 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SCN . . . I 5 16.368 18.547 52.75 1 47.44 ? S SCN 1006 A 1 HETATM 2 C C SCN . . . I 5 17.798 19.47 53.292 1 46.39 ? C SCN 1006 A 1 HETATM 3 N N SCN . . . I 5 18.698 20.096 53.701 1 46.18 ? N SCN 1006 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #