data_3IBE # _model_server_result.job_id VrzJaIno_O0HYH_ovDiQBA _model_server_result.datetime_utc '2024-11-22 05:19:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ibe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1109}' # _entry.id 3IBE # _exptl.entry_id 3IBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 604.662 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{4-morpholin-4-yl-1-[1-(pyridin-3-ylcarbonyl)piperidin-4-yl]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}phenyl)-3-pyridin-4-ylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 3IBE _cell.length_a 145.159 _cell.length_b 68.458 _cell.length_c 106.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H32 N10 O3' _chem_comp.formula_weight 604.662 _chem_comp.id L64 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{4-morpholin-4-yl-1-[1-(pyridin-3-ylcarbonyl)piperidin-4-yl]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}phenyl)-3-pyridin-4-ylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 L64 doub 173 n y C1 C5 L64 sing 174 n y N1 C4 L64 sing 175 n y N1 C5 L64 doub 176 n y O1 C6 L64 doub 177 n n C2 C3 L64 sing 178 n y N2 C6 L64 sing 179 n n N2 C7 L64 sing 180 n n N2 C11 L64 sing 181 n n O2 C23 L64 doub 182 n n C3 C4 L64 doub 183 n y C3 C6 L64 sing 184 n n N3 N4 L64 sing 185 n y N3 C9 L64 sing 186 n n N3 C12 L64 sing 187 n y O3 C30 L64 sing 188 n n O3 C31 L64 sing 189 n n N4 C14 L64 doub 190 n y N5 C15 L64 doub 191 n y N5 C16 L64 sing 192 n y N6 C12 L64 sing 193 n y N6 C16 L64 doub 194 n y C7 C8 L64 sing 195 n n N7 C20 L64 sing 196 n n N7 C23 L64 sing 197 n n C8 C9 L64 sing 198 n n N8 C23 L64 sing 199 n n N8 C24 L64 sing 200 n n C9 C10 L64 sing 201 n n N9 C26 L64 doub 202 n y N9 C27 L64 sing 203 n y C10 C11 L64 sing 204 n n N10 C15 L64 sing 205 n n N10 C29 L64 sing 206 n n N10 C32 L64 sing 207 n n C12 C13 L64 doub 208 n y C13 C14 L64 sing 209 n y C13 C15 L64 sing 210 n y C16 C17 L64 sing 211 n y C17 C18 L64 doub 212 n y C17 C22 L64 sing 213 n y C18 C19 L64 sing 214 n y C19 C20 L64 doub 215 n y C20 C21 L64 sing 216 n y C21 C22 L64 doub 217 n y C24 C25 L64 doub 218 n y C24 C28 L64 sing 219 n y C25 C26 L64 sing 220 n y C27 C28 L64 doub 221 n y C29 C30 L64 sing 222 n n C31 C32 L64 sing 223 n n C1 H1 L64 sing 224 n n C2 H2 L64 sing 225 n n C4 H4 L64 sing 226 n n C5 H5 L64 sing 227 n n C7 H7 L64 sing 228 n n C7 H7A L64 sing 229 n n N7 HN7 L64 sing 230 n n C8 H8 L64 sing 231 n n C8 H8A L64 sing 232 n n N8 HN8 L64 sing 233 n n C9 H9 L64 sing 234 n n C10 H10 L64 sing 235 n n C10 H10A L64 sing 236 n n C11 H11 L64 sing 237 n n C11 H11A L64 sing 238 n n C14 H14 L64 sing 239 n n C18 H18 L64 sing 240 n n C19 H19 L64 sing 241 n n C21 H21 L64 sing 242 n n C22 H22 L64 sing 243 n n C25 H25 L64 sing 244 n n C26 H26 L64 sing 245 n n C27 H27 L64 sing 246 n n C28 H28 L64 sing 247 n n C29 H29 L64 sing 248 n n C29 H29A L64 sing 249 n n C30 H30 L64 sing 250 n n C30 H30A L64 sing 251 n n C31 H31 L64 sing 252 n n C31 H31A L64 sing 253 n n C32 H32 L64 sing 254 n n C32 H32A L64 sing 255 n n # _atom_sites.entry_id 3IBE _atom_sites.fract_transf_matrix[1][1] 0.006889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000578 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 3 L64 A 1 1109 1 L64 L64 . D 4 HOH A 1 6 6 HOH HOH . D 4 HOH A 2 8 8 HOH HOH . D 4 HOH A 3 11 11 HOH HOH . D 4 HOH A 4 13 13 HOH HOH . D 4 HOH A 5 14 14 HOH HOH . D 4 HOH A 6 19 19 HOH HOH . D 4 HOH A 7 21 21 HOH HOH . D 4 HOH A 8 25 25 HOH HOH . D 4 HOH A 9 34 34 HOH HOH . D 4 HOH A 10 35 35 HOH HOH . D 4 HOH A 11 37 37 HOH HOH . D 4 HOH A 12 38 38 HOH HOH . D 4 HOH A 13 40 40 HOH HOH . D 4 HOH A 14 46 46 HOH HOH . D 4 HOH A 15 47 47 HOH HOH . D 4 HOH A 16 48 48 HOH HOH . D 4 HOH A 17 53 53 HOH HOH . D 4 HOH A 18 54 54 HOH HOH . D 4 HOH A 19 55 55 HOH HOH . D 4 HOH A 20 63 63 HOH HOH . D 4 HOH A 21 65 65 HOH HOH . D 4 HOH A 22 66 66 HOH HOH . D 4 HOH A 23 67 67 HOH HOH . D 4 HOH A 24 68 68 HOH HOH . D 4 HOH A 25 72 72 HOH HOH . D 4 HOH A 26 82 82 HOH HOH . D 4 HOH A 27 83 83 HOH HOH . D 4 HOH A 28 84 84 HOH HOH . D 4 HOH A 29 86 86 HOH HOH . D 4 HOH A 30 92 92 HOH HOH . D 4 HOH A 31 93 93 HOH HOH . D 4 HOH A 32 94 94 HOH HOH . D 4 HOH A 33 96 96 HOH HOH . D 4 HOH A 34 98 98 HOH HOH . D 4 HOH A 35 102 102 HOH HOH . D 4 HOH A 36 108 108 HOH HOH . D 4 HOH A 37 109 109 HOH HOH . D 4 HOH A 38 110 110 HOH HOH . D 4 HOH A 39 113 113 HOH HOH . D 4 HOH A 40 114 114 HOH HOH . D 4 HOH A 41 115 115 HOH HOH . D 4 HOH A 42 116 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 L64 . . . C 3 43.479 24.853 33.532 1 110.83 ? C1 L64 1109 A 1 HETATM 2 N N1 L64 . . . C 3 45.433 23.73 32.589 1 75.18 ? N1 L64 1109 A 1 HETATM 3 O O1 L64 . . . C 3 44.473 21.87 36.608 1 98.55 ? O1 L64 1109 A 1 HETATM 4 C C2 L64 . . . C 3 43.316 23.858 34.495 1 94.3 ? C2 L64 1109 A 1 HETATM 5 N N2 L64 . . . C 3 43.678 20.538 34.852 1 87.98 ? N2 L64 1109 A 1 HETATM 6 O O2 L64 . . . C 3 37.239 13.209 34.432 1 74.52 ? O2 L64 1109 A 1 HETATM 7 C C3 L64 . . . C 3 44.226 22.812 34.486 1 84.08 ? C3 L64 1109 A 1 HETATM 8 N N3 L64 . . . C 3 45.19 17.248 32.85 1 75.37 ? N3 L64 1109 A 1 HETATM 9 O O3 L64 . . . C 3 47.919 11.966 28.735 1 67.49 ? O3 L64 1109 A 1 HETATM 10 C C4 L64 . . . C 3 45.247 22.78 33.539 1 92.76 ? C4 L64 1109 A 1 HETATM 11 N N4 L64 . . . C 3 46.475 17.49 32.512 1 73.52 ? N4 L64 1109 A 1 HETATM 12 C C5 L64 . . . C 3 44.533 24.744 32.617 1 102.17 ? C5 L64 1109 A 1 HETATM 13 N N5 L64 . . . C 3 44.259 13.604 31.538 1 57.4 ? N5 L64 1109 A 1 HETATM 14 C C6 L64 . . . C 3 44.141 21.707 35.432 1 92.16 ? C6 L64 1109 A 1 HETATM 15 N N6 L64 . . . C 3 43.499 15.569 32.68 1 81.03 ? N6 L64 1109 A 1 HETATM 16 C C7 L64 . . . C 3 43.565 19.308 35.616 1 110.53 ? C7 L64 1109 A 1 HETATM 17 N N7 L64 . . . C 3 38.294 11.836 32.905 1 59.82 ? N7 L64 1109 A 1 HETATM 18 C C8 L64 . . . C 3 44.608 18.349 35.049 1 84.64 ? C8 L64 1109 A 1 HETATM 19 N N8 L64 . . . C 3 36.168 11.423 33.407 1 87.21 ? N8 L64 1109 A 1 HETATM 20 C C9 L64 . . . C 3 44.353 18.195 33.554 1 75.74 ? C9 L64 1109 A 1 HETATM 21 N N9 L64 . . . C 3 32.177 11.768 34.67 1 87.63 ? N9 L64 1109 A 1 HETATM 22 C C10 L64 . . . C 3 44.358 19.525 32.803 1 79.97 ? C10 L64 1109 A 1 HETATM 23 N N10 L64 . . . C 3 46.363 13.25 30.644 1 61.73 ? N10 L64 1109 A 1 HETATM 24 C C11 L64 . . . C 3 43.309 20.395 33.451 1 73.29 ? C11 L64 1109 A 1 HETATM 25 C C12 L64 . . . C 3 44.734 16.031 32.462 1 80.22 ? C12 L64 1109 A 1 HETATM 26 C C13 L64 . . . C 3 45.775 15.397 31.82 1 88.55 ? C13 L64 1109 A 1 HETATM 27 C C14 L64 . . . C 3 46.821 16.355 31.887 1 78.4 ? C14 L64 1109 A 1 HETATM 28 C C15 L64 . . . C 3 45.504 14.095 31.327 1 81 ? C15 L64 1109 A 1 HETATM 29 C C16 L64 . . . C 3 43.336 14.339 32.181 1 68.96 ? C16 L64 1109 A 1 HETATM 30 C C17 L64 . . . C 3 42.033 13.696 32.376 1 68.14 ? C17 L64 1109 A 1 HETATM 31 C C18 L64 . . . C 3 40.984 14.328 33.048 1 64.13 ? C18 L64 1109 A 1 HETATM 32 C C19 L64 . . . C 3 39.758 13.681 33.216 1 74.74 ? C19 L64 1109 A 1 HETATM 33 C C20 L64 . . . C 3 39.564 12.395 32.721 1 70.47 ? C20 L64 1109 A 1 HETATM 34 C C21 L64 . . . C 3 40.6 11.764 32.047 1 62.6 ? C21 L64 1109 A 1 HETATM 35 C C22 L64 . . . C 3 41.814 12.408 31.882 1 58.34 ? C22 L64 1109 A 1 HETATM 36 C C23 L64 . . . C 3 37.233 12.27 33.666 1 73.12 ? C23 L64 1109 A 1 HETATM 37 C C24 L64 . . . C 3 34.822 11.475 33.822 1 83.39 ? C24 L64 1109 A 1 HETATM 38 C C25 L64 . . . C 3 34.361 12.696 34.305 1 74.16 ? C25 L64 1109 A 1 HETATM 39 C C26 L64 . . . C 3 33.047 12.792 34.715 1 70.28 ? C26 L64 1109 A 1 HETATM 40 C C27 L64 . . . C 3 32.643 10.599 34.192 1 72.62 ? C27 L64 1109 A 1 HETATM 41 C C28 L64 . . . C 3 33.94 10.405 33.759 1 78.03 ? C28 L64 1109 A 1 HETATM 42 C C29 L64 . . . C 3 47.822 13.414 30.675 1 81.77 ? C29 L64 1109 A 1 HETATM 43 C C30 L64 . . . C 3 48.355 13.23 29.251 1 78.54 ? C30 L64 1109 A 1 HETATM 44 C C31 L64 . . . C 3 46.493 11.937 28.63 1 65.13 ? C31 L64 1109 A 1 HETATM 45 C C32 L64 . . . C 3 45.832 12.051 30.002 1 52.06 ? C32 L64 1109 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 45 #