data_3IBH # _model_server_result.job_id ZmtAwrjLYdgwQEPt6q-vYw _model_server_result.datetime_utc '2025-07-13 13:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ibh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":234}' # _entry.id 3IBH # _exptl.entry_id 3IBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IBH _cell.length_a 88.774 _cell.length_b 88.774 _cell.length_c 69.102 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 23.034 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 3IBH _atom_sites.fract_transf_matrix[1][1] 0.011265 _atom_sites.fract_transf_matrix[1][2] 0.006504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 234 1 GSH GTT . C 3 HOH A 1 235 1 HOH HOH . C 3 HOH A 2 236 2 HOH HOH . C 3 HOH A 3 237 3 HOH HOH . C 3 HOH A 4 238 4 HOH HOH . C 3 HOH A 5 239 5 HOH HOH . C 3 HOH A 6 240 6 HOH HOH . C 3 HOH A 7 241 7 HOH HOH . C 3 HOH A 8 242 8 HOH HOH . C 3 HOH A 9 243 9 HOH HOH . C 3 HOH A 10 244 10 HOH HOH . C 3 HOH A 11 245 11 HOH HOH . C 3 HOH A 12 246 12 HOH HOH . C 3 HOH A 13 247 13 HOH HOH . C 3 HOH A 14 248 14 HOH HOH . C 3 HOH A 15 249 15 HOH HOH . C 3 HOH A 16 250 16 HOH HOH . C 3 HOH A 17 251 17 HOH HOH . C 3 HOH A 18 252 18 HOH HOH . C 3 HOH A 19 253 19 HOH HOH . C 3 HOH A 20 254 20 HOH HOH . C 3 HOH A 21 255 21 HOH HOH . C 3 HOH A 22 256 22 HOH HOH . C 3 HOH A 23 257 23 HOH HOH . C 3 HOH A 24 258 24 HOH HOH . C 3 HOH A 25 259 25 HOH HOH . C 3 HOH A 26 260 26 HOH HOH . C 3 HOH A 27 261 27 HOH HOH . C 3 HOH A 28 262 28 HOH HOH . C 3 HOH A 29 263 29 HOH HOH . C 3 HOH A 30 264 30 HOH HOH . C 3 HOH A 31 265 31 HOH HOH . C 3 HOH A 32 266 32 HOH HOH . C 3 HOH A 33 267 33 HOH HOH . C 3 HOH A 34 268 34 HOH HOH . C 3 HOH A 35 269 35 HOH HOH . C 3 HOH A 36 270 36 HOH HOH . C 3 HOH A 37 271 37 HOH HOH . C 3 HOH A 38 272 38 HOH HOH . C 3 HOH A 39 273 39 HOH HOH . C 3 HOH A 40 274 40 HOH HOH . C 3 HOH A 41 275 41 HOH HOH . C 3 HOH A 42 276 42 HOH HOH . C 3 HOH A 43 277 43 HOH HOH . C 3 HOH A 44 278 44 HOH HOH . C 3 HOH A 45 279 45 HOH HOH . C 3 HOH A 46 280 46 HOH HOH . C 3 HOH A 47 281 47 HOH HOH . C 3 HOH A 48 282 48 HOH HOH . C 3 HOH A 49 283 49 HOH HOH . C 3 HOH A 50 284 50 HOH HOH . C 3 HOH A 51 285 51 HOH HOH . C 3 HOH A 52 286 52 HOH HOH . C 3 HOH A 53 287 53 HOH HOH . C 3 HOH A 54 288 54 HOH HOH . C 3 HOH A 55 289 55 HOH HOH . C 3 HOH A 56 290 56 HOH HOH . C 3 HOH A 57 291 57 HOH HOH . C 3 HOH A 58 292 58 HOH HOH . C 3 HOH A 59 293 59 HOH HOH . C 3 HOH A 60 294 60 HOH HOH . C 3 HOH A 61 295 61 HOH HOH . C 3 HOH A 62 296 62 HOH HOH . C 3 HOH A 63 297 63 HOH HOH . C 3 HOH A 64 298 64 HOH HOH . C 3 HOH A 65 299 65 HOH HOH . C 3 HOH A 66 300 66 HOH HOH . C 3 HOH A 67 301 67 HOH HOH . C 3 HOH A 68 302 68 HOH HOH . C 3 HOH A 69 303 69 HOH HOH . C 3 HOH A 70 304 70 HOH HOH . C 3 HOH A 71 305 71 HOH HOH . C 3 HOH A 72 306 72 HOH HOH . C 3 HOH A 73 307 73 HOH HOH . C 3 HOH A 74 308 74 HOH HOH . C 3 HOH A 75 309 75 HOH HOH . C 3 HOH A 76 310 76 HOH HOH . C 3 HOH A 77 311 77 HOH HOH . C 3 HOH A 78 312 78 HOH HOH . C 3 HOH A 79 313 79 HOH HOH . C 3 HOH A 80 314 80 HOH HOH . C 3 HOH A 81 315 81 HOH HOH . C 3 HOH A 82 316 82 HOH HOH . C 3 HOH A 83 317 83 HOH HOH . C 3 HOH A 84 318 84 HOH HOH . C 3 HOH A 85 319 85 HOH HOH . C 3 HOH A 86 320 86 HOH HOH . C 3 HOH A 87 321 87 HOH HOH . C 3 HOH A 88 322 88 HOH HOH . C 3 HOH A 89 323 89 HOH HOH . C 3 HOH A 90 324 90 HOH HOH . C 3 HOH A 91 325 91 HOH HOH . C 3 HOH A 92 326 92 HOH HOH . C 3 HOH A 93 327 93 HOH HOH . C 3 HOH A 94 328 94 HOH HOH . C 3 HOH A 95 329 95 HOH HOH . C 3 HOH A 96 330 96 HOH HOH . C 3 HOH A 97 331 97 HOH HOH . C 3 HOH A 98 332 98 HOH HOH . C 3 HOH A 99 333 99 HOH HOH . C 3 HOH A 100 334 100 HOH HOH . C 3 HOH A 101 335 101 HOH HOH . C 3 HOH A 102 336 102 HOH HOH . C 3 HOH A 103 337 103 HOH HOH . C 3 HOH A 104 338 104 HOH HOH . C 3 HOH A 105 339 105 HOH HOH . C 3 HOH A 106 340 106 HOH HOH . C 3 HOH A 107 341 107 HOH HOH . C 3 HOH A 108 342 108 HOH HOH . C 3 HOH A 109 343 109 HOH HOH . C 3 HOH A 110 344 110 HOH HOH . C 3 HOH A 111 345 111 HOH HOH . C 3 HOH A 112 346 112 HOH HOH . C 3 HOH A 113 347 113 HOH HOH . C 3 HOH A 114 348 114 HOH HOH . C 3 HOH A 115 349 115 HOH HOH . C 3 HOH A 116 350 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 -14.758 31.896 2.961 1 24.56 ? N1 GSH 234 A 1 HETATM 2 C CA1 GSH . . . B 2 -15.222 33.069 3.704 1 30.42 ? CA1 GSH 234 A 1 HETATM 3 C C1 GSH . . . B 2 -15.712 32.539 4.944 1 31.99 ? C1 GSH 234 A 1 HETATM 4 O O11 GSH . . . B 2 -16.902 32.761 5.411 1 32.68 ? O11 GSH 234 A 1 HETATM 5 O O12 GSH . . . B 2 -14.738 31.919 5.432 1 29.29 ? O12 GSH 234 A 1 HETATM 6 C CB1 GSH . . . B 2 -16.173 34.151 3.181 1 27.86 ? CB1 GSH 234 A 1 HETATM 7 C CG1 GSH . . . B 2 -15.302 34.815 2.149 1 25.51 ? CG1 GSH 234 A 1 HETATM 8 C CD1 GSH . . . B 2 -15.509 36.275 1.843 1 23.96 ? CD1 GSH 234 A 1 HETATM 9 O OE1 GSH . . . B 2 -16.338 37.121 2.608 1 22.56 ? OE1 GSH 234 A 1 HETATM 10 N N2 GSH . . . B 2 -14.809 36.676 0.778 1 24 ? N2 GSH 234 A 1 HETATM 11 C CA2 GSH . . . B 2 -14.872 38.019 0.22 1 24.48 ? CA2 GSH 234 A 1 HETATM 12 C C2 GSH . . . B 2 -16.125 38.242 -0.552 1 26.28 ? C2 GSH 234 A 1 HETATM 13 O O2 GSH . . . B 2 -16.602 37.19 -1.321 1 26.14 ? O2 GSH 234 A 1 HETATM 14 C CB2 GSH . . . B 2 -13.694 38.242 -0.721 1 24.23 ? CB2 GSH 234 A 1 HETATM 15 S SG2 GSH . . . B 2 -12.325 38.992 0.196 1 24.36 ? SG2 GSH 234 A 1 HETATM 16 N N3 GSH . . . B 2 -16.724 39.431 -0.51 1 27.06 ? N3 GSH 234 A 1 HETATM 17 C CA3 GSH . . . B 2 -17.74 39.733 -1.497 1 28.61 ? CA3 GSH 234 A 1 HETATM 18 C C3 GSH . . . B 2 -18.905 40.472 -0.897 1 30.83 ? C3 GSH 234 A 1 HETATM 19 O O31 GSH . . . B 2 -19.742 41.022 -1.646 1 32.07 ? O31 GSH 234 A 1 HETATM 20 O O32 GSH . . . B 2 -19.051 40.533 0.341 1 32.11 ? O32 GSH 234 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #