data_3IBK # _model_server_result.job_id f9ejlzPnko9FeHBz4Acvjw _model_server_result.datetime_utc '2024-11-22 05:44:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ibk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":14}' # _entry.id 3IBK # _exptl.entry_id 3IBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IBK _cell.length_a 57.583 _cell.length_b 57.583 _cell.length_c 38.377 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' 5BU 1 A 5BU 1 1_555 A P A 2 A A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale2 B O3' 5BU 1 B 5BU 13 1_555 B P A 2 B A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.586 ? metalc ? metalc1 A O6 G 3 A G 3 1_555 D K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A O6 G 4 A G 4 1_555 C K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc3 A O6 G 4 A G 4 1_555 D K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc4 A O6 G 5 A G 5 1_555 C K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc5 A O6 G 9 A G 9 1_555 D K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc6 A O6 G 10 A G 10 1_555 C K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc7 A O6 G 10 A G 10 1_555 D K K . A K 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc8 A O6 G 11 A G 11 1_555 C K K . A K 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc9 C K K . A K 13 1_555 B O6 G 4 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc10 C K K . A K 13 1_555 B O6 G 5 B G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc11 C K K . A K 13 1_555 B O6 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc12 C K K . A K 13 1_555 B O6 G 11 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc13 D K K . A K 14 1_555 B O6 G 3 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc14 D K K . A K 14 1_555 B O6 G 4 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc15 D K K . A K 14 1_555 B O6 G 9 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc16 D K K . A K 14 1_555 B O6 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? hydrog TYPE_6_PAIR hydrog1 A N1 G 3 A G 3 1_555 A O6 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 G 3 A G 3 1_555 A N7 G 9 A G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 G 3 A G 3 1_555 B N2 G 9 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 G 3 A G 3 1_555 B N1 G 9 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 G 4 A G 4 1_555 A O6 G 10 A G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 G 4 A G 4 1_555 A N7 G 10 A G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 G 4 A G 4 1_555 B N2 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 G 4 A G 4 1_555 B N1 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 G 5 A G 5 1_555 A O6 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 G 5 A G 5 1_555 A N7 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N7 G 5 A G 5 1_555 B N2 G 11 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A O6 G 5 A G 5 1_555 B N1 G 11 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 G 9 A G 9 1_555 B O6 G 3 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 G 9 A G 9 1_555 B N7 G 3 B G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 G 10 A G 10 1_555 B O6 G 4 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 G 10 A G 10 1_555 B N7 G 4 B G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 G 11 A G 11 1_555 B O6 G 5 B G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 G 11 A G 11 1_555 B N7 G 5 B G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 B N1 G 3 B G 15 1_555 B O6 G 9 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 B N2 G 3 B G 15 1_555 B N7 G 9 B G 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 B N1 G 4 B G 16 1_555 B O6 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 B N2 G 4 B G 16 1_555 B N7 G 10 B G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 B N1 G 5 B G 17 1_555 B O6 G 11 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 B N2 G 5 B G 17 1_555 B N7 G 11 B G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IBK _atom_sites.fract_transf_matrix[1][1] 0.017366 _atom_sites.fract_transf_matrix[1][2] 0.010026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 13 1 K K . D 2 K A 1 14 2 K K . E 3 HOH A 1 15 15 HOH HOH . E 3 HOH A 2 16 16 HOH HOH . E 3 HOH A 3 17 17 HOH HOH . E 3 HOH A 4 18 18 HOH HOH . E 3 HOH A 5 19 19 HOH HOH . E 3 HOH A 6 20 20 HOH HOH . E 3 HOH A 7 21 21 HOH HOH . E 3 HOH A 8 22 1 HOH HOH . E 3 HOH A 9 23 2 HOH HOH . E 3 HOH A 10 24 3 HOH HOH . E 3 HOH A 11 25 5 HOH HOH . E 3 HOH A 12 26 6 HOH HOH . E 3 HOH A 13 27 9 HOH HOH . E 3 HOH A 14 28 28 HOH HOH . E 3 HOH A 15 29 29 HOH HOH . E 3 HOH A 16 30 10 HOH HOH . E 3 HOH A 17 31 11 HOH HOH . E 3 HOH A 18 35 35 HOH HOH . E 3 HOH A 19 38 38 HOH HOH . E 3 HOH A 20 39 39 HOH HOH . E 3 HOH A 21 44 44 HOH HOH . E 3 HOH A 22 45 45 HOH HOH . E 3 HOH A 23 46 46 HOH HOH . E 3 HOH A 24 48 48 HOH HOH . E 3 HOH A 25 49 49 HOH HOH . E 3 HOH A 26 50 50 HOH HOH . E 3 HOH A 27 51 51 HOH HOH . E 3 HOH A 28 55 55 HOH HOH . F 3 HOH B 1 4 4 HOH HOH . F 3 HOH B 2 7 7 HOH HOH . F 3 HOH B 3 8 8 HOH HOH . F 3 HOH B 4 25 13 HOH HOH . F 3 HOH B 5 27 27 HOH HOH . F 3 HOH B 6 30 30 HOH HOH . F 3 HOH B 7 31 31 HOH HOH . F 3 HOH B 8 32 32 HOH HOH . F 3 HOH B 9 33 33 HOH HOH . F 3 HOH B 10 34 34 HOH HOH . F 3 HOH B 11 40 40 HOH HOH . F 3 HOH B 12 41 41 HOH HOH . F 3 HOH B 13 42 42 HOH HOH . F 3 HOH B 14 47 47 HOH HOH . F 3 HOH B 15 52 52 HOH HOH . F 3 HOH B 16 53 53 HOH HOH . F 3 HOH B 17 54 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.393 _atom_site.Cartn_y 20.806 _atom_site.Cartn_z 34.033 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 14 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #