data_3IC2 # _model_server_result.job_id 68zWGOu1JI0PRKDUgvCWlQ _model_server_result.datetime_utc '2024-11-29 08:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ic2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":144}' # _entry.id 3IC2 # _exptl.entry_id 3IC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.274 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(5-methoxy-2-methylphenoxy)methyl]pyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IC2 _cell.length_a 92 _cell.length_b 92 _cell.length_c 144.13 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N VAL 1 A VAL 1 1_555 G C1 B78 . A B78 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale2 C N VAL 1 C VAL 1 1_555 L C1 B78 . C B78 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 F FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 E O1 OXY . A OXY 142 1_555 F FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 H O1 OXY . B OXY 147 1_555 I FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc5 C NE2 HIS 87 C HIS 87 1_555 K FE HEM . C HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc6 J O1 OXY . C OXY 142 1_555 K FE HEM . C HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc7 D NE2 HIS 92 D HIS 92 1_555 N FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc8 M O1 OXY . D OXY 147 1_555 N FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? # _chem_comp.formula 'C14 H15 N O2' _chem_comp.formula_weight 229.274 _chem_comp.id B78 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(5-methoxy-2-methylphenoxy)methyl]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B78 sing 70 n n C2 C3 B78 doub 71 n y C2 C7 B78 sing 72 n y C3 C4 B78 sing 73 n y C3 O10 B78 sing 74 n n C4 C5 B78 doub 75 n y C5 C6 B78 sing 76 n y C5 O8 B78 sing 77 n n C6 C7 B78 doub 78 n y O8 C9 B78 sing 79 n n O10 C11 B78 sing 80 n n C11 C12 B78 sing 81 n n C12 C13 B78 doub 82 n y C12 C17 B78 sing 83 n y C13 C14 B78 sing 84 n y C14 N15 B78 doub 85 n y N15 C16 B78 sing 86 n y C16 C17 B78 doub 87 n y C1 H1 B78 sing 88 n n C1 H1A B78 sing 89 n n C1 H1B B78 sing 90 n n C4 H4 B78 sing 91 n n C6 H6 B78 sing 92 n n C7 H7 B78 sing 93 n n C9 H9 B78 sing 94 n n C9 H9A B78 sing 95 n n C9 H9B B78 sing 96 n n C11 H11 B78 sing 97 n n C11 H11A B78 sing 98 n n C13 H13 B78 sing 99 n n C14 H14 B78 sing 100 n n C16 H16 B78 sing 101 n n C17 H17 B78 sing 102 n n # _atom_sites.entry_id 3IC2 _atom_sites.fract_transf_matrix[1][1] 0.01087 _atom_sites.fract_transf_matrix[1][2] 0.006276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 OXY A 1 142 142 OXY OXY . F 4 HEM A 1 143 143 HEM HEM . G 5 B78 A 1 144 144 B78 B78 . H 3 OXY B 1 147 147 OXY OXY . I 4 HEM B 1 148 148 HEM HEM . J 3 OXY C 1 142 142 OXY OXY . K 4 HEM C 1 143 143 HEM HEM . L 5 B78 C 1 144 144 B78 B78 . M 3 OXY D 1 147 147 OXY OXY . N 4 HEM D 1 148 148 HEM HEM . O 6 SO4 D 1 149 149 SO4 SO4 . P 7 HOH A 1 146 146 HOH HOH . P 7 HOH A 2 147 147 HOH HOH . P 7 HOH A 3 148 148 HOH HOH . P 7 HOH A 4 149 149 HOH HOH . P 7 HOH A 5 150 150 HOH HOH . P 7 HOH A 6 151 151 HOH HOH . P 7 HOH A 7 152 152 HOH HOH . P 7 HOH A 8 153 153 HOH HOH . P 7 HOH A 9 154 154 HOH HOH . P 7 HOH A 10 155 155 HOH HOH . P 7 HOH A 11 156 156 HOH HOH . P 7 HOH A 12 157 157 HOH HOH . P 7 HOH A 13 158 158 HOH HOH . P 7 HOH A 14 159 159 HOH HOH . P 7 HOH A 15 160 160 HOH HOH . P 7 HOH A 16 161 161 HOH HOH . P 7 HOH A 17 162 162 HOH HOH . P 7 HOH A 18 163 163 HOH HOH . P 7 HOH A 19 164 164 HOH HOH . P 7 HOH A 20 165 165 HOH HOH . P 7 HOH A 21 166 166 HOH HOH . P 7 HOH A 22 167 167 HOH HOH . P 7 HOH A 23 168 168 HOH HOH . P 7 HOH A 24 169 169 HOH HOH . P 7 HOH A 25 170 170 HOH HOH . P 7 HOH A 26 171 171 HOH HOH . P 7 HOH A 27 172 172 HOH HOH . P 7 HOH A 28 173 173 HOH HOH . P 7 HOH A 29 174 174 HOH HOH . P 7 HOH A 30 175 175 HOH HOH . P 7 HOH A 31 176 176 HOH HOH . P 7 HOH A 32 177 177 HOH HOH . P 7 HOH A 33 178 178 HOH HOH . P 7 HOH A 34 179 179 HOH HOH . P 7 HOH A 35 180 180 HOH HOH . P 7 HOH A 36 181 181 HOH HOH . P 7 HOH A 37 182 182 HOH HOH . P 7 HOH A 38 183 183 HOH HOH . P 7 HOH A 39 184 184 HOH HOH . P 7 HOH A 40 185 185 HOH HOH . P 7 HOH A 41 186 186 HOH HOH . P 7 HOH A 42 187 187 HOH HOH . P 7 HOH A 43 188 188 HOH HOH . P 7 HOH A 44 189 189 HOH HOH . P 7 HOH A 45 190 190 HOH HOH . P 7 HOH A 46 191 191 HOH HOH . P 7 HOH A 47 192 192 HOH HOH . P 7 HOH A 48 193 193 HOH HOH . P 7 HOH A 49 194 194 HOH HOH . Q 7 HOH B 1 149 149 HOH HOH . Q 7 HOH B 2 150 150 HOH HOH . Q 7 HOH B 3 151 151 HOH HOH . Q 7 HOH B 4 152 152 HOH HOH . Q 7 HOH B 5 153 153 HOH HOH . Q 7 HOH B 6 154 154 HOH HOH . Q 7 HOH B 7 155 155 HOH HOH . Q 7 HOH B 8 156 156 HOH HOH . Q 7 HOH B 9 157 157 HOH HOH . Q 7 HOH B 10 158 158 HOH HOH . Q 7 HOH B 11 159 159 HOH HOH . Q 7 HOH B 12 160 160 HOH HOH . Q 7 HOH B 13 161 161 HOH HOH . Q 7 HOH B 14 162 162 HOH HOH . Q 7 HOH B 15 163 163 HOH HOH . Q 7 HOH B 16 164 164 HOH HOH . Q 7 HOH B 17 165 165 HOH HOH . Q 7 HOH B 18 166 166 HOH HOH . Q 7 HOH B 19 167 167 HOH HOH . Q 7 HOH B 20 168 168 HOH HOH . Q 7 HOH B 21 169 169 HOH HOH . Q 7 HOH B 22 170 170 HOH HOH . Q 7 HOH B 23 171 171 HOH HOH . Q 7 HOH B 24 172 172 HOH HOH . Q 7 HOH B 25 173 173 HOH HOH . Q 7 HOH B 26 174 174 HOH HOH . Q 7 HOH B 27 175 175 HOH HOH . Q 7 HOH B 28 176 176 HOH HOH . Q 7 HOH B 29 177 177 HOH HOH . Q 7 HOH B 30 178 178 HOH HOH . Q 7 HOH B 31 179 179 HOH HOH . Q 7 HOH B 32 180 180 HOH HOH . R 7 HOH C 1 146 146 HOH HOH . R 7 HOH C 2 147 147 HOH HOH . R 7 HOH C 3 148 148 HOH HOH . R 7 HOH C 4 149 149 HOH HOH . R 7 HOH C 5 150 150 HOH HOH . R 7 HOH C 6 151 151 HOH HOH . R 7 HOH C 7 152 152 HOH HOH . R 7 HOH C 8 153 153 HOH HOH . R 7 HOH C 9 154 154 HOH HOH . R 7 HOH C 10 155 155 HOH HOH . R 7 HOH C 11 156 156 HOH HOH . R 7 HOH C 12 157 157 HOH HOH . R 7 HOH C 13 158 158 HOH HOH . R 7 HOH C 14 159 159 HOH HOH . R 7 HOH C 15 160 160 HOH HOH . R 7 HOH C 16 161 161 HOH HOH . R 7 HOH C 17 162 162 HOH HOH . R 7 HOH C 18 163 163 HOH HOH . R 7 HOH C 19 164 164 HOH HOH . R 7 HOH C 20 165 165 HOH HOH . R 7 HOH C 21 166 166 HOH HOH . R 7 HOH C 22 167 167 HOH HOH . R 7 HOH C 23 168 168 HOH HOH . R 7 HOH C 24 169 169 HOH HOH . R 7 HOH C 25 170 170 HOH HOH . R 7 HOH C 26 171 171 HOH HOH . R 7 HOH C 27 172 172 HOH HOH . R 7 HOH C 28 173 173 HOH HOH . R 7 HOH C 29 174 174 HOH HOH . R 7 HOH C 30 175 175 HOH HOH . R 7 HOH C 31 176 176 HOH HOH . R 7 HOH C 32 177 177 HOH HOH . R 7 HOH C 33 178 178 HOH HOH . R 7 HOH C 34 179 179 HOH HOH . R 7 HOH C 35 180 180 HOH HOH . R 7 HOH C 36 181 181 HOH HOH . R 7 HOH C 37 182 182 HOH HOH . R 7 HOH C 38 183 183 HOH HOH . R 7 HOH C 39 184 184 HOH HOH . R 7 HOH C 40 185 185 HOH HOH . R 7 HOH C 41 186 186 HOH HOH . R 7 HOH C 42 187 187 HOH HOH . R 7 HOH C 43 188 188 HOH HOH . R 7 HOH C 44 189 189 HOH HOH . R 7 HOH C 45 190 190 HOH HOH . R 7 HOH C 46 191 191 HOH HOH . R 7 HOH C 47 192 192 HOH HOH . R 7 HOH C 48 193 193 HOH HOH . R 7 HOH C 49 194 194 HOH HOH . R 7 HOH C 50 195 195 HOH HOH . R 7 HOH C 51 196 196 HOH HOH . R 7 HOH C 52 197 197 HOH HOH . R 7 HOH C 53 198 198 HOH HOH . R 7 HOH C 54 199 199 HOH HOH . R 7 HOH C 55 200 200 HOH HOH . R 7 HOH C 56 201 201 HOH HOH . S 7 HOH D 1 150 150 HOH HOH . S 7 HOH D 2 151 151 HOH HOH . S 7 HOH D 3 152 152 HOH HOH . S 7 HOH D 4 153 153 HOH HOH . S 7 HOH D 5 154 154 HOH HOH . S 7 HOH D 6 155 155 HOH HOH . S 7 HOH D 7 156 156 HOH HOH . S 7 HOH D 8 157 157 HOH HOH . S 7 HOH D 9 159 159 HOH HOH . S 7 HOH D 10 160 160 HOH HOH . S 7 HOH D 11 161 161 HOH HOH . S 7 HOH D 12 162 162 HOH HOH . S 7 HOH D 13 163 163 HOH HOH . S 7 HOH D 14 164 164 HOH HOH . S 7 HOH D 15 165 165 HOH HOH . S 7 HOH D 16 166 166 HOH HOH . S 7 HOH D 17 167 167 HOH HOH . S 7 HOH D 18 168 168 HOH HOH . S 7 HOH D 19 169 169 HOH HOH . S 7 HOH D 20 170 170 HOH HOH . S 7 HOH D 21 171 171 HOH HOH . S 7 HOH D 22 172 172 HOH HOH . S 7 HOH D 23 173 173 HOH HOH . S 7 HOH D 24 174 174 HOH HOH . S 7 HOH D 25 175 175 HOH HOH . S 7 HOH D 26 176 176 HOH HOH . S 7 HOH D 27 177 177 HOH HOH . S 7 HOH D 28 178 178 HOH HOH . S 7 HOH D 29 179 179 HOH HOH . S 7 HOH D 30 180 180 HOH HOH . S 7 HOH D 31 181 181 HOH HOH . S 7 HOH D 32 182 182 HOH HOH . S 7 HOH D 33 183 183 HOH HOH . S 7 HOH D 34 184 184 HOH HOH . S 7 HOH D 35 185 185 HOH HOH . S 7 HOH D 36 186 186 HOH HOH . S 7 HOH D 37 187 187 HOH HOH . S 7 HOH D 38 188 188 HOH HOH . S 7 HOH D 39 189 189 HOH HOH . S 7 HOH D 40 190 190 HOH HOH . S 7 HOH D 41 191 191 HOH HOH . S 7 HOH D 42 192 192 HOH HOH . S 7 HOH D 43 193 193 HOH HOH . S 7 HOH D 44 194 194 HOH HOH . S 7 HOH D 45 195 195 HOH HOH . S 7 HOH D 46 196 196 HOH HOH . S 7 HOH D 47 197 197 HOH HOH . S 7 HOH D 48 198 198 HOH HOH . S 7 HOH D 49 199 199 HOH HOH . S 7 HOH D 50 200 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B78 . . . G 5 31.598 28.071 34.597 1 28.26 ? C1 B78 144 A 1 HETATM 2 C C2 B78 . . . G 5 32.961 27.885 33.97 1 31.84 ? C2 B78 144 A 1 HETATM 3 C C3 B78 . . . G 5 33.145 27.212 32.724 1 34.77 ? C3 B78 144 A 1 HETATM 4 C C4 B78 . . . G 5 34.474 27.078 32.191 1 34.4 ? C4 B78 144 A 1 HETATM 5 C C5 B78 . . . G 5 35.603 27.593 32.897 1 35.4 ? C5 B78 144 A 1 HETATM 6 C C6 B78 . . . G 5 35.397 28.257 34.14 1 33.9 ? C6 B78 144 A 1 HETATM 7 C C7 B78 . . . G 5 34.083 28.397 34.674 1 30.65 ? C7 B78 144 A 1 HETATM 8 O O8 B78 . . . G 5 36.9 27.452 32.358 1 36.88 ? O8 B78 144 A 1 HETATM 9 C C9 B78 . . . G 5 37.485 26.135 32.415 1 41.12 ? C9 B78 144 A 1 HETATM 10 O O10 B78 . . . G 5 32.011 26.714 32.052 1 37.85 ? O10 B78 144 A 1 HETATM 11 C C11 B78 . . . G 5 32.176 25.525 31.239 1 42.93 ? C11 B78 144 A 1 HETATM 12 C C12 B78 . . . G 5 30.898 25.237 30.445 1 47.19 ? C12 B78 144 A 1 HETATM 13 C C13 B78 . . . G 5 29.886 26.225 30.325 1 51.17 ? C13 B78 144 A 1 HETATM 14 C C14 B78 . . . G 5 28.716 25.923 29.585 1 52.86 ? C14 B78 144 A 1 HETATM 15 N N15 B78 . . . G 5 28.572 24.686 28.992 1 53.29 ? N15 B78 144 A 1 HETATM 16 C C16 B78 . . . G 5 29.537 23.713 29.094 1 51.08 ? C16 B78 144 A 1 HETATM 17 C C17 B78 . . . G 5 30.721 23.967 29.817 1 47.77 ? C17 B78 144 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #