data_3ICA
#
_model_server_result.job_id            -mcquVAlcn8TBmvHf2SJFA 
_model_server_result.datetime_utc      '2025-07-05 16:30:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ica 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":214}' 
#
_entry.id    3ICA 
#
_exptl.entry_id    3ICA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ICA 
_cell.length_a            59.725 
_cell.length_b            59.725 
_cell.length_c            256.266 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ICA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 45 A GLU 42 1_555 A N MSE 46 A MSE 43 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C GLU 45 A GLU 42 1_555 A N MSE 46 A MSE 43 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C MSE 46 A MSE 43 1_555 A N ALA 47 A ALA 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C LEU 50 A LEU 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 A C MSE 51 A MSE 48 1_555 A N ASN 52 A ASN 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C CYS 60 A CYS 57 1_555 A N MSE 61 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale7 A C MSE 61 A MSE 58 1_555 A N ARG 62 A ARG 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale8 A C ALA 171 A ALA 168 1_555 A N MSE 172 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 A C MSE 172 A MSE 169 1_555 A N GLU 173 A GLU 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 A C LEU 212 A LEU 209 1_555 A N MSE 213 A MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 B C GLU 45 B GLU 42 1_555 B N MSE 46 B MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 B C MSE 46 B MSE 43 1_555 B N ALA 47 B ALA 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale13 B C LEU 50 B LEU 47 1_555 B N MSE 51 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale14 B C MSE 51 B MSE 48 1_555 B N ASN 52 B ASN 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C CYS 60 B CYS 57 1_555 B N MSE 61 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale16 B C MSE 61 B MSE 58 1_555 B N ARG 62 B ARG 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale17 B C ALA 171 B ALA 168 1_555 B N MSE 172 B MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale18 B C MSE 172 B MSE 169 1_555 B N GLU 173 B GLU 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale19 B C LEU 212 B LEU 209 1_555 B N MSE 213 B MSE 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3ICA 
_atom_sites.fract_transf_matrix[1][1]    0.016743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003902 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 211 2 GOL GOL . 
D 2 GOL A 1 212 3 GOL GOL . 
E 2 GOL A 1 213 4 GOL GOL . 
F 2 GOL A 1 214 5 GOL GOL . 
G 2 GOL A 1 215 8 GOL GOL . 
H 2 GOL A 1 216 9 GOL GOL . 
I 2 GOL A 1 217 10 GOL GOL . 
J 3 TAM B 1 211 1 TAM TAM . 
K 2 GOL B 1 212 1 GOL GOL . 
L 2 GOL B 1 213 6 GOL GOL . 
M 2 GOL B 1 214 7 GOL GOL . 
N 2 GOL B 1 215 11 GOL GOL . 
O 4 HOH A 1 218 218 HOH HOH . 
O 4 HOH A 2 219 1 HOH HOH . 
O 4 HOH A 3 220 7 HOH HOH . 
O 4 HOH A 4 221 8 HOH HOH . 
O 4 HOH A 5 222 9 HOH HOH . 
O 4 HOH A 6 223 19 HOH HOH . 
O 4 HOH A 7 224 20 HOH HOH . 
O 4 HOH A 8 225 21 HOH HOH . 
O 4 HOH A 9 226 22 HOH HOH . 
O 4 HOH A 10 227 26 HOH HOH . 
O 4 HOH A 11 228 28 HOH HOH . 
O 4 HOH A 12 229 29 HOH HOH . 
O 4 HOH A 13 230 32 HOH HOH . 
O 4 HOH A 14 231 34 HOH HOH . 
O 4 HOH A 15 232 36 HOH HOH . 
O 4 HOH A 16 233 39 HOH HOH . 
O 4 HOH A 17 234 41 HOH HOH . 
O 4 HOH A 18 235 42 HOH HOH . 
O 4 HOH A 19 236 43 HOH HOH . 
O 4 HOH A 20 237 46 HOH HOH . 
O 4 HOH A 21 238 47 HOH HOH . 
O 4 HOH A 22 239 48 HOH HOH . 
O 4 HOH A 23 240 51 HOH HOH . 
O 4 HOH A 24 241 54 HOH HOH . 
O 4 HOH A 25 242 56 HOH HOH . 
O 4 HOH A 26 243 57 HOH HOH . 
O 4 HOH A 27 244 63 HOH HOH . 
O 4 HOH A 28 245 66 HOH HOH . 
O 4 HOH A 29 246 67 HOH HOH . 
O 4 HOH A 30 247 72 HOH HOH . 
O 4 HOH A 31 248 75 HOH HOH . 
O 4 HOH A 32 249 82 HOH HOH . 
O 4 HOH A 33 250 83 HOH HOH . 
O 4 HOH A 34 251 84 HOH HOH . 
O 4 HOH A 35 252 86 HOH HOH . 
O 4 HOH A 36 253 89 HOH HOH . 
O 4 HOH A 37 254 93 HOH HOH . 
O 4 HOH A 38 255 94 HOH HOH . 
O 4 HOH A 39 256 95 HOH HOH . 
O 4 HOH A 40 257 100 HOH HOH . 
O 4 HOH A 41 258 102 HOH HOH . 
O 4 HOH A 42 259 106 HOH HOH . 
O 4 HOH A 43 260 107 HOH HOH . 
O 4 HOH A 44 261 111 HOH HOH . 
O 4 HOH A 45 262 114 HOH HOH . 
O 4 HOH A 46 263 117 HOH HOH . 
O 4 HOH A 47 264 118 HOH HOH . 
O 4 HOH A 48 265 119 HOH HOH . 
O 4 HOH A 49 266 125 HOH HOH . 
O 4 HOH A 50 267 130 HOH HOH . 
O 4 HOH A 51 268 135 HOH HOH . 
O 4 HOH A 52 269 141 HOH HOH . 
O 4 HOH A 53 270 142 HOH HOH . 
O 4 HOH A 54 271 150 HOH HOH . 
O 4 HOH A 55 272 154 HOH HOH . 
O 4 HOH A 56 273 159 HOH HOH . 
O 4 HOH A 57 274 160 HOH HOH . 
O 4 HOH A 58 275 161 HOH HOH . 
O 4 HOH A 59 276 173 HOH HOH . 
O 4 HOH A 60 277 174 HOH HOH . 
O 4 HOH A 61 278 176 HOH HOH . 
O 4 HOH A 62 279 182 HOH HOH . 
O 4 HOH A 63 280 183 HOH HOH . 
O 4 HOH A 64 281 187 HOH HOH . 
O 4 HOH A 65 282 189 HOH HOH . 
O 4 HOH A 66 283 194 HOH HOH . 
O 4 HOH A 67 284 196 HOH HOH . 
O 4 HOH A 68 285 201 HOH HOH . 
O 4 HOH A 69 286 206 HOH HOH . 
O 4 HOH A 70 287 208 HOH HOH . 
O 4 HOH A 71 288 209 HOH HOH . 
O 4 HOH A 72 289 211 HOH HOH . 
O 4 HOH A 73 290 213 HOH HOH . 
O 4 HOH A 74 291 214 HOH HOH . 
O 4 HOH A 75 292 215 HOH HOH . 
O 4 HOH A 76 293 216 HOH HOH . 
P 4 HOH B 1 216 3 HOH HOH . 
P 4 HOH B 2 217 217 HOH HOH . 
P 4 HOH B 3 218 10 HOH HOH . 
P 4 HOH B 4 219 219 HOH HOH . 
P 4 HOH B 5 220 11 HOH HOH . 
P 4 HOH B 6 221 13 HOH HOH . 
P 4 HOH B 7 222 14 HOH HOH . 
P 4 HOH B 8 223 15 HOH HOH . 
P 4 HOH B 9 224 18 HOH HOH . 
P 4 HOH B 10 225 25 HOH HOH . 
P 4 HOH B 11 226 27 HOH HOH . 
P 4 HOH B 12 227 30 HOH HOH . 
P 4 HOH B 13 228 31 HOH HOH . 
P 4 HOH B 14 229 33 HOH HOH . 
P 4 HOH B 15 230 35 HOH HOH . 
P 4 HOH B 16 231 37 HOH HOH . 
P 4 HOH B 17 232 38 HOH HOH . 
P 4 HOH B 18 233 40 HOH HOH . 
P 4 HOH B 19 234 44 HOH HOH . 
P 4 HOH B 20 235 45 HOH HOH . 
P 4 HOH B 21 236 49 HOH HOH . 
P 4 HOH B 22 237 50 HOH HOH . 
P 4 HOH B 23 238 53 HOH HOH . 
P 4 HOH B 24 239 55 HOH HOH . 
P 4 HOH B 25 240 58 HOH HOH . 
P 4 HOH B 26 241 61 HOH HOH . 
P 4 HOH B 27 242 62 HOH HOH . 
P 4 HOH B 28 243 64 HOH HOH . 
P 4 HOH B 29 244 65 HOH HOH . 
P 4 HOH B 30 245 68 HOH HOH . 
P 4 HOH B 31 246 70 HOH HOH . 
P 4 HOH B 32 247 71 HOH HOH . 
P 4 HOH B 33 248 74 HOH HOH . 
P 4 HOH B 34 249 77 HOH HOH . 
P 4 HOH B 35 250 79 HOH HOH . 
P 4 HOH B 36 251 80 HOH HOH . 
P 4 HOH B 37 252 81 HOH HOH . 
P 4 HOH B 38 253 88 HOH HOH . 
P 4 HOH B 39 254 90 HOH HOH . 
P 4 HOH B 40 255 91 HOH HOH . 
P 4 HOH B 41 256 92 HOH HOH . 
P 4 HOH B 42 257 97 HOH HOH . 
P 4 HOH B 43 258 105 HOH HOH . 
P 4 HOH B 44 259 108 HOH HOH . 
P 4 HOH B 45 260 109 HOH HOH . 
P 4 HOH B 46 261 112 HOH HOH . 
P 4 HOH B 47 262 116 HOH HOH . 
P 4 HOH B 48 263 121 HOH HOH . 
P 4 HOH B 49 264 122 HOH HOH . 
P 4 HOH B 50 265 124 HOH HOH . 
P 4 HOH B 51 266 128 HOH HOH . 
P 4 HOH B 52 267 129 HOH HOH . 
P 4 HOH B 53 268 131 HOH HOH . 
P 4 HOH B 54 269 133 HOH HOH . 
P 4 HOH B 55 270 136 HOH HOH . 
P 4 HOH B 56 271 138 HOH HOH . 
P 4 HOH B 57 272 139 HOH HOH . 
P 4 HOH B 58 273 143 HOH HOH . 
P 4 HOH B 59 274 144 HOH HOH . 
P 4 HOH B 60 275 145 HOH HOH . 
P 4 HOH B 61 276 146 HOH HOH . 
P 4 HOH B 62 277 149 HOH HOH . 
P 4 HOH B 63 278 155 HOH HOH . 
P 4 HOH B 64 279 162 HOH HOH . 
P 4 HOH B 65 280 164 HOH HOH . 
P 4 HOH B 66 281 165 HOH HOH . 
P 4 HOH B 67 282 169 HOH HOH . 
P 4 HOH B 68 283 170 HOH HOH . 
P 4 HOH B 69 284 172 HOH HOH . 
P 4 HOH B 70 285 175 HOH HOH . 
P 4 HOH B 71 286 178 HOH HOH . 
P 4 HOH B 72 287 180 HOH HOH . 
P 4 HOH B 73 288 181 HOH HOH . 
P 4 HOH B 74 289 184 HOH HOH . 
P 4 HOH B 75 290 185 HOH HOH . 
P 4 HOH B 76 291 188 HOH HOH . 
P 4 HOH B 77 292 193 HOH HOH . 
P 4 HOH B 78 293 199 HOH HOH . 
P 4 HOH B 79 294 202 HOH HOH . 
P 4 HOH B 80 295 203 HOH HOH . 
P 4 HOH B 81 296 204 HOH HOH . 
P 4 HOH B 82 297 205 HOH HOH . 
P 4 HOH B 83 298 207 HOH HOH . 
P 4 HOH B 84 299 210 HOH HOH . 
P 4 HOH B 85 300 212 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 2 22.421 11.826 98.221 1 69 ? C1 GOL 214 B 1 
HETATM 2 O O1 GOL . . . M 2 22.404 11.14 96.991 1 67.18 ? O1 GOL 214 B 1 
HETATM 3 C C2 GOL . . . M 2 23.122 10.936 99.247 1 69.22 ? C2 GOL 214 B 1 
HETATM 4 O O2 GOL . . . M 2 23.09 11.521 100.529 1 66.77 ? O2 GOL 214 B 1 
HETATM 5 C C3 GOL . . . M 2 24.563 10.687 98.811 1 69.87 ? C3 GOL 214 B 1 
HETATM 6 O O3 GOL . . . M 2 24.907 9.363 99.133 1 71.01 ? O3 GOL 214 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           577 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#