data_3ICY
#
_model_server_result.job_id            3hRGYhFv_CwgwVVCMFdwUg 
_model_server_result.datetime_utc      '2024-10-10 04:18:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3icy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":117}' 
#
_entry.id    3ICY 
#
_exptl.entry_id    3ICY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.67 
_cell.angle_gamma         90 
_cell.entry_id            3ICY 
_cell.length_a            106.728 
_cell.length_b            32.483 
_cell.length_c            93.755 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ICY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2 
B,E,F,H 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -39.132523 0 85.197686 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 53 A SER 50 1_555 A N MSE 54 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 54 A MSE 51 1_555 A N ILE 55 A ILE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C HIS 61 A HIS 58 1_555 A N MSE 62 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 62 A MSE 59 1_555 A N LEU 63 A LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale5 A C HIS 96 A HIS 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale6 A C MSE 97 A MSE 94 1_555 A N ARG 98 A ARG 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C SER 53 B SER 50 1_555 B N MSE 54 B MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 B C MSE 54 B MSE 51 1_555 B N ILE 55 B ILE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C HIS 61 B HIS 58 1_555 B N MSE 62 B MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 B C MSE 62 B MSE 59 1_555 B N LEU 63 B LEU 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 B C HIS 96 B HIS 93 1_555 B N MSE 97 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale12 B C MSE 97 B MSE 94 1_555 B N ARG 98 B ARG 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3ICY 
_atom_sites.fract_transf_matrix[1][1]    0.00937 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004304 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011737 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 116 2 GOL GOL . 
D 2 GOL A 1 117 4 GOL GOL . 
E 2 GOL B 1 116 1 GOL GOL . 
F 2 GOL B 1 117 3 GOL GOL . 
G 3 HOH A 1 118 1 HOH HOH . 
G 3 HOH A 2 119 3 HOH HOH . 
G 3 HOH A 3 120 25 HOH HOH . 
G 3 HOH A 4 121 26 HOH HOH . 
G 3 HOH A 5 122 28 HOH HOH . 
G 3 HOH A 6 123 32 HOH HOH . 
G 3 HOH A 7 124 38 HOH HOH . 
H 3 HOH B 1 118 2 HOH HOH . 
H 3 HOH B 2 119 4 HOH HOH . 
H 3 HOH B 3 120 5 HOH HOH . 
H 3 HOH B 4 121 6 HOH HOH . 
H 3 HOH B 5 122 7 HOH HOH . 
H 3 HOH B 6 123 8 HOH HOH . 
H 3 HOH B 7 124 9 HOH HOH . 
H 3 HOH B 8 125 10 HOH HOH . 
H 3 HOH B 9 126 11 HOH HOH . 
H 3 HOH B 10 127 12 HOH HOH . 
H 3 HOH B 11 128 13 HOH HOH . 
H 3 HOH B 12 129 14 HOH HOH . 
H 3 HOH B 13 130 15 HOH HOH . 
H 3 HOH B 14 131 16 HOH HOH . 
H 3 HOH B 15 132 17 HOH HOH . 
H 3 HOH B 16 133 18 HOH HOH . 
H 3 HOH B 17 134 19 HOH HOH . 
H 3 HOH B 18 135 20 HOH HOH . 
H 3 HOH B 19 136 21 HOH HOH . 
H 3 HOH B 20 137 22 HOH HOH . 
H 3 HOH B 21 138 23 HOH HOH . 
H 3 HOH B 22 139 24 HOH HOH . 
H 3 HOH B 23 140 27 HOH HOH . 
H 3 HOH B 24 141 29 HOH HOH . 
H 3 HOH B 25 142 30 HOH HOH . 
H 3 HOH B 26 143 31 HOH HOH . 
H 3 HOH B 27 144 33 HOH HOH . 
H 3 HOH B 28 145 34 HOH HOH . 
H 3 HOH B 29 146 35 HOH HOH . 
H 3 HOH B 30 147 36 HOH HOH . 
H 3 HOH B 31 148 37 HOH HOH . 
H 3 HOH B 32 149 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 10.175 38.245 46.729 1 68.66 ? C1 GOL 117 B 1 
HETATM 2 O O1 GOL . . . F 2 11.102 37.184 46.866 1 66.65 ? O1 GOL 117 B 1 
HETATM 3 C C2 GOL . . . F 2 9.258 38.357 47.951 1 67.51 ? C2 GOL 117 B 1 
HETATM 4 O O2 GOL . . . F 2 9.905 37.927 49.13 1 66.96 ? O2 GOL 117 B 1 
HETATM 5 C C3 GOL . . . F 2 8.853 39.82 48.092 1 66.8 ? C3 GOL 117 B 1 
HETATM 6 O O3 GOL . . . F 2 9.054 40.481 46.85 1 66.49 ? O3 GOL 117 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#