data_3ID0 # _model_server_result.job_id 2che4vonAxZQLvTi72EnBw _model_server_result.datetime_utc '2024-11-05 09:29:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3id0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 3ID0 # _exptl.entry_id 3ID0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ID0 _cell.length_a 58.197 _cell.length_b 58.197 _cell.length_c 390.223 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ID0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 29.0985 50.40008 325.185833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 98 A ASP 98 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc2 A OD1 ASP 98 A ASP 98 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A OD2 ASP 102 A ASP 102 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A OD2 ASP 102 A ASP 102 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 A OD2 ASP 170 A ASP 170 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc6 A OD2 ASP 250 A ASP 250 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc7 B O4 NI9 . A NI9 363 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc8 B O3 NI9 . A NI9 363 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc9 B O5 NI9 . A NI9 363 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc10 B O6 NI9 . A NI9 363 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc11 B O7 NI9 . A NI9 363 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ID0 _atom_sites.fract_transf_matrix[1][1] 0.017183 _atom_sites.fract_transf_matrix[1][2] 0.009921 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI9 A 1 363 1 NI9 NI9 . C 3 MG A 1 401 401 MG MG . D 3 MG A 1 402 402 MG MG . E 3 MG A 1 403 403 MG MG . F 4 SO4 A 1 405 405 SO4 SO4 . G 4 SO4 A 1 406 406 SO4 SO4 . H 5 HOH A 1 364 1 HOH HOH . H 5 HOH A 2 365 3 HOH HOH . H 5 HOH A 3 366 260 HOH HOH . H 5 HOH A 4 367 1 HOH HOH . H 5 HOH A 5 368 2 HOH HOH . H 5 HOH A 6 369 3 HOH HOH . H 5 HOH A 7 370 4 HOH HOH . H 5 HOH A 8 371 5 HOH HOH . H 5 HOH A 9 372 6 HOH HOH . H 5 HOH A 10 373 7 HOH HOH . H 5 HOH A 11 374 8 HOH HOH . H 5 HOH A 12 375 9 HOH HOH . H 5 HOH A 13 376 10 HOH HOH . H 5 HOH A 14 377 11 HOH HOH . H 5 HOH A 15 378 12 HOH HOH . H 5 HOH A 16 379 13 HOH HOH . H 5 HOH A 17 380 14 HOH HOH . H 5 HOH A 18 381 15 HOH HOH . H 5 HOH A 19 382 16 HOH HOH . H 5 HOH A 20 383 17 HOH HOH . H 5 HOH A 21 384 18 HOH HOH . H 5 HOH A 22 385 19 HOH HOH . H 5 HOH A 23 386 20 HOH HOH . H 5 HOH A 24 387 21 HOH HOH . H 5 HOH A 25 388 22 HOH HOH . H 5 HOH A 26 389 23 HOH HOH . H 5 HOH A 27 390 24 HOH HOH . H 5 HOH A 28 391 25 HOH HOH . H 5 HOH A 29 392 26 HOH HOH . H 5 HOH A 30 393 27 HOH HOH . H 5 HOH A 31 394 28 HOH HOH . H 5 HOH A 32 395 29 HOH HOH . H 5 HOH A 33 396 30 HOH HOH . H 5 HOH A 34 397 31 HOH HOH . H 5 HOH A 35 398 32 HOH HOH . H 5 HOH A 36 399 33 HOH HOH . H 5 HOH A 37 400 34 HOH HOH . H 5 HOH A 38 404 35 HOH HOH . H 5 HOH A 39 407 36 HOH HOH . H 5 HOH A 40 408 37 HOH HOH . H 5 HOH A 41 409 38 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.358 _atom_site.Cartn_y 14.577 _atom_site.Cartn_z 179.122 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #