data_3ID8 # _model_server_result.job_id jXOvZeTlGxAjX9-_hOEc2w _model_server_result.datetime_utc '2024-11-27 03:45:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3id8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3ID8 # _exptl.entry_id 3ID8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ID8 _cell.length_a 67 _cell.length_b 82.6 _cell.length_c 86.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ID8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 210 A ASP 205 1_555 E MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A O MET 243 A MET 238 1_555 F K K . A K 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 A O VAL 246 A VAL 241 1_555 F K K . A K 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc4 A O VAL 249 A VAL 244 1_555 F K K . A K 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc5 A O GLY 251 A GLY 246 1_555 F K K . A K 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc6 D O2G ANP . A ANP 600 1_555 E MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 D O1B ANP . A ANP 600 1_555 E MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 133 n n C1 O1 GLC sing 134 n n C1 O5 GLC sing 135 n n C1 H1 GLC sing 136 n n C2 C3 GLC sing 137 n n C2 O2 GLC sing 138 n n C2 H2 GLC sing 139 n n C3 C4 GLC sing 140 n n C3 O3 GLC sing 141 n n C3 H3 GLC sing 142 n n C4 C5 GLC sing 143 n n C4 O4 GLC sing 144 n n C4 H4 GLC sing 145 n n C5 C6 GLC sing 146 n n C5 O5 GLC sing 147 n n C5 H5 GLC sing 148 n n C6 O6 GLC sing 149 n n C6 H61 GLC sing 150 n n C6 H62 GLC sing 151 n n O1 HO1 GLC sing 152 n n O2 HO2 GLC sing 153 n n O3 HO3 GLC sing 154 n n O4 HO4 GLC sing 155 n n O6 HO6 GLC sing 156 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3ID8 _atom_sites.fract_transf_matrix[1][1] 0.014925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 500 500 GLC GLC . C 3 MRK A 1 501 501 MRK MRK . D 4 ANP A 1 600 600 ANP UNK . E 5 MG A 1 700 700 MG MG . F 6 K A 1 800 800 K K . G 7 HOH A 1 466 1 HOH HOH . G 7 HOH A 2 467 2 HOH HOH . G 7 HOH A 3 468 3 HOH HOH . G 7 HOH A 4 469 4 HOH HOH . G 7 HOH A 5 470 6 HOH HOH . G 7 HOH A 6 471 7 HOH HOH . G 7 HOH A 7 472 8 HOH HOH . G 7 HOH A 8 473 9 HOH HOH . G 7 HOH A 9 474 10 HOH HOH . G 7 HOH A 10 475 11 HOH HOH . G 7 HOH A 11 476 12 HOH HOH . G 7 HOH A 12 477 13 HOH HOH . G 7 HOH A 13 478 14 HOH HOH . G 7 HOH A 14 479 15 HOH HOH . G 7 HOH A 15 480 16 HOH HOH . G 7 HOH A 16 481 18 HOH HOH . G 7 HOH A 17 482 20 HOH HOH . G 7 HOH A 18 483 21 HOH HOH . G 7 HOH A 19 484 22 HOH HOH . G 7 HOH A 20 485 23 HOH HOH . G 7 HOH A 21 486 24 HOH HOH . G 7 HOH A 22 487 25 HOH HOH . G 7 HOH A 23 488 26 HOH HOH . G 7 HOH A 24 489 28 HOH HOH . G 7 HOH A 25 490 29 HOH HOH . G 7 HOH A 26 491 31 HOH HOH . G 7 HOH A 27 492 32 HOH HOH . G 7 HOH A 28 493 33 HOH HOH . G 7 HOH A 29 494 34 HOH HOH . G 7 HOH A 30 495 35 HOH HOH . G 7 HOH A 31 496 36 HOH HOH . G 7 HOH A 32 497 37 HOH HOH . G 7 HOH A 33 498 38 HOH HOH . G 7 HOH A 34 499 40 HOH HOH . G 7 HOH A 35 502 41 HOH HOH . G 7 HOH A 36 503 42 HOH HOH . G 7 HOH A 37 504 43 HOH HOH . G 7 HOH A 38 505 44 HOH HOH . G 7 HOH A 39 506 45 HOH HOH . G 7 HOH A 40 507 46 HOH HOH . G 7 HOH A 41 508 47 HOH HOH . G 7 HOH A 42 509 48 HOH HOH . G 7 HOH A 43 510 49 HOH HOH . G 7 HOH A 44 511 50 HOH HOH . G 7 HOH A 45 512 51 HOH HOH . G 7 HOH A 46 513 52 HOH HOH . G 7 HOH A 47 514 53 HOH HOH . G 7 HOH A 48 515 54 HOH HOH . G 7 HOH A 49 516 56 HOH HOH . G 7 HOH A 50 517 58 HOH HOH . G 7 HOH A 51 518 59 HOH HOH . G 7 HOH A 52 519 61 HOH HOH . G 7 HOH A 53 520 62 HOH HOH . G 7 HOH A 54 521 63 HOH HOH . G 7 HOH A 55 522 64 HOH HOH . G 7 HOH A 56 523 65 HOH HOH . G 7 HOH A 57 524 66 HOH HOH . G 7 HOH A 58 525 68 HOH HOH . G 7 HOH A 59 526 69 HOH HOH . G 7 HOH A 60 527 70 HOH HOH . G 7 HOH A 61 528 72 HOH HOH . G 7 HOH A 62 529 74 HOH HOH . G 7 HOH A 63 530 75 HOH HOH . G 7 HOH A 64 531 76 HOH HOH . G 7 HOH A 65 532 77 HOH HOH . G 7 HOH A 66 533 78 HOH HOH . G 7 HOH A 67 534 79 HOH HOH . G 7 HOH A 68 535 80 HOH HOH . G 7 HOH A 69 536 81 HOH HOH . G 7 HOH A 70 537 82 HOH HOH . G 7 HOH A 71 538 83 HOH HOH . G 7 HOH A 72 539 84 HOH HOH . G 7 HOH A 73 540 85 HOH HOH . G 7 HOH A 74 541 86 HOH HOH . G 7 HOH A 75 542 87 HOH HOH . G 7 HOH A 76 543 88 HOH HOH . G 7 HOH A 77 544 89 HOH HOH . G 7 HOH A 78 545 90 HOH HOH . G 7 HOH A 79 546 91 HOH HOH . G 7 HOH A 80 547 92 HOH HOH . G 7 HOH A 81 548 94 HOH HOH . G 7 HOH A 82 549 95 HOH HOH . G 7 HOH A 83 550 96 HOH HOH . G 7 HOH A 84 551 97 HOH HOH . G 7 HOH A 85 552 98 HOH HOH . G 7 HOH A 86 553 99 HOH HOH . G 7 HOH A 87 554 101 HOH HOH . G 7 HOH A 88 555 102 HOH HOH . G 7 HOH A 89 556 103 HOH HOH . G 7 HOH A 90 557 104 HOH HOH . G 7 HOH A 91 558 105 HOH HOH . G 7 HOH A 92 559 108 HOH HOH . G 7 HOH A 93 560 109 HOH HOH . G 7 HOH A 94 561 110 HOH HOH . G 7 HOH A 95 562 111 HOH HOH . G 7 HOH A 96 563 113 HOH HOH . G 7 HOH A 97 564 116 HOH HOH . G 7 HOH A 98 565 117 HOH HOH . G 7 HOH A 99 566 118 HOH HOH . G 7 HOH A 100 567 119 HOH HOH . G 7 HOH A 101 568 120 HOH HOH . G 7 HOH A 102 569 121 HOH HOH . G 7 HOH A 103 570 122 HOH HOH . G 7 HOH A 104 571 125 HOH HOH . G 7 HOH A 105 572 126 HOH HOH . G 7 HOH A 106 573 127 HOH HOH . G 7 HOH A 107 574 129 HOH HOH . G 7 HOH A 108 575 130 HOH HOH . G 7 HOH A 109 576 131 HOH HOH . G 7 HOH A 110 577 132 HOH HOH . G 7 HOH A 111 578 134 HOH HOH . G 7 HOH A 112 579 136 HOH HOH . G 7 HOH A 113 580 137 HOH HOH . G 7 HOH A 114 581 138 HOH HOH . G 7 HOH A 115 582 140 HOH HOH . G 7 HOH A 116 583 141 HOH HOH . G 7 HOH A 117 584 142 HOH HOH . G 7 HOH A 118 585 153 HOH HOH . G 7 HOH A 119 586 154 HOH HOH . G 7 HOH A 120 587 156 HOH HOH . G 7 HOH A 121 588 163 HOH HOH . G 7 HOH A 122 589 171 HOH HOH . G 7 HOH A 123 590 176 HOH HOH . G 7 HOH A 124 591 177 HOH HOH . G 7 HOH A 125 592 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . B 2 -27.832 -5.496 12.021 1 21.14 ? C1 GLC 500 A 1 HETATM 2 C C2 GLC . . . B 2 -26.839 -6.19 12.969 1 21.09 ? C2 GLC 500 A 1 HETATM 3 C C3 GLC . . . B 2 -25.877 -5.184 13.622 1 20.09 ? C3 GLC 500 A 1 HETATM 4 C C4 GLC . . . B 2 -25.233 -4.321 12.541 1 18.92 ? C4 GLC 500 A 1 HETATM 5 C C5 GLC . . . B 2 -26.296 -3.698 11.646 1 18.99 ? C5 GLC 500 A 1 HETATM 6 C C6 GLC . . . B 2 -25.679 -2.865 10.524 1 21.49 ? C6 GLC 500 A 1 HETATM 7 O O1 GLC . . . B 2 -28.644 -4.616 12.769 1 24.04 ? O1 GLC 500 A 1 HETATM 8 O O2 GLC . . . B 2 -27.521 -6.942 13.941 1 20.21 ? O2 GLC 500 A 1 HETATM 9 O O3 GLC . . . B 2 -24.852 -5.827 14.361 1 18.99 ? O3 GLC 500 A 1 HETATM 10 O O4 GLC . . . B 2 -24.438 -3.345 13.154 1 16.74 ? O4 GLC 500 A 1 HETATM 11 O O5 GLC . . . B 2 -27.114 -4.713 11.079 1 20.85 ? O5 GLC 500 A 1 HETATM 12 O O6 GLC . . . B 2 -24.975 -3.693 9.61 1 20.29 ? O6 GLC 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #