data_3IDH # _model_server_result.job_id yHRliG_1GAMsBlmx4SF1Xg _model_server_result.datetime_utc '2024-11-23 08:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3idh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3IDH # _exptl.entry_id 3IDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IDH _cell.length_a 65.51 _cell.length_b 81.97 _cell.length_c 86.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 243 A MET 238 1_555 C K K . A K 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc2 A O VAL 246 A VAL 241 1_555 C K K . A K 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc3 A O VAL 249 A VAL 244 1_555 C K K . A K 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc4 A O GLY 251 A GLY 246 1_555 C K K . A K 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 83 n n C1 O1 GLC sing 84 n n C1 O5 GLC sing 85 n n C1 H1 GLC sing 86 n n C2 C3 GLC sing 87 n n C2 O2 GLC sing 88 n n C2 H2 GLC sing 89 n n C3 C4 GLC sing 90 n n C3 O3 GLC sing 91 n n C3 H3 GLC sing 92 n n C4 C5 GLC sing 93 n n C4 O4 GLC sing 94 n n C4 H4 GLC sing 95 n n C5 C6 GLC sing 96 n n C5 O5 GLC sing 97 n n C5 H5 GLC sing 98 n n C6 O6 GLC sing 99 n n C6 H61 GLC sing 100 n n C6 H62 GLC sing 101 n n O1 HO1 GLC sing 102 n n O2 HO2 GLC sing 103 n n O3 HO3 GLC sing 104 n n O4 HO4 GLC sing 105 n n O6 HO6 GLC sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3IDH _atom_sites.fract_transf_matrix[1][1] 0.015265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 500 500 GLC GLC . C 3 K A 1 600 600 K K . D 4 HOH A 1 466 2 HOH HOH . D 4 HOH A 2 467 3 HOH HOH . D 4 HOH A 3 468 4 HOH HOH . D 4 HOH A 4 469 5 HOH HOH . D 4 HOH A 5 470 6 HOH HOH . D 4 HOH A 6 471 7 HOH HOH . D 4 HOH A 7 472 8 HOH HOH . D 4 HOH A 8 473 9 HOH HOH . D 4 HOH A 9 474 10 HOH HOH . D 4 HOH A 10 475 11 HOH HOH . D 4 HOH A 11 476 13 HOH HOH . D 4 HOH A 12 477 14 HOH HOH . D 4 HOH A 13 478 15 HOH HOH . D 4 HOH A 14 479 16 HOH HOH . D 4 HOH A 15 480 17 HOH HOH . D 4 HOH A 16 481 18 HOH HOH . D 4 HOH A 17 482 19 HOH HOH . D 4 HOH A 18 483 20 HOH HOH . D 4 HOH A 19 484 21 HOH HOH . D 4 HOH A 20 485 22 HOH HOH . D 4 HOH A 21 486 23 HOH HOH . D 4 HOH A 22 487 24 HOH HOH . D 4 HOH A 23 488 25 HOH HOH . D 4 HOH A 24 489 26 HOH HOH . D 4 HOH A 25 490 27 HOH HOH . D 4 HOH A 26 491 28 HOH HOH . D 4 HOH A 27 492 29 HOH HOH . D 4 HOH A 28 493 30 HOH HOH . D 4 HOH A 29 494 31 HOH HOH . D 4 HOH A 30 495 32 HOH HOH . D 4 HOH A 31 496 33 HOH HOH . D 4 HOH A 32 497 34 HOH HOH . D 4 HOH A 33 498 35 HOH HOH . D 4 HOH A 34 499 36 HOH HOH . D 4 HOH A 35 501 37 HOH HOH . D 4 HOH A 36 502 38 HOH HOH . D 4 HOH A 37 503 39 HOH HOH . D 4 HOH A 38 504 40 HOH HOH . D 4 HOH A 39 505 41 HOH HOH . D 4 HOH A 40 506 42 HOH HOH . D 4 HOH A 41 507 44 HOH HOH . D 4 HOH A 42 508 45 HOH HOH . D 4 HOH A 43 509 46 HOH HOH . D 4 HOH A 44 510 47 HOH HOH . D 4 HOH A 45 511 48 HOH HOH . D 4 HOH A 46 512 49 HOH HOH . D 4 HOH A 47 513 50 HOH HOH . D 4 HOH A 48 514 51 HOH HOH . D 4 HOH A 49 515 52 HOH HOH . D 4 HOH A 50 516 53 HOH HOH . D 4 HOH A 51 517 55 HOH HOH . D 4 HOH A 52 518 56 HOH HOH . D 4 HOH A 53 519 58 HOH HOH . D 4 HOH A 54 520 59 HOH HOH . D 4 HOH A 55 521 60 HOH HOH . D 4 HOH A 56 522 61 HOH HOH . D 4 HOH A 57 523 63 HOH HOH . D 4 HOH A 58 524 64 HOH HOH . D 4 HOH A 59 525 66 HOH HOH . D 4 HOH A 60 526 67 HOH HOH . D 4 HOH A 61 527 68 HOH HOH . D 4 HOH A 62 528 69 HOH HOH . D 4 HOH A 63 529 70 HOH HOH . D 4 HOH A 64 530 71 HOH HOH . D 4 HOH A 65 531 72 HOH HOH . D 4 HOH A 66 532 74 HOH HOH . D 4 HOH A 67 533 75 HOH HOH . D 4 HOH A 68 534 76 HOH HOH . D 4 HOH A 69 535 77 HOH HOH . D 4 HOH A 70 536 78 HOH HOH . D 4 HOH A 71 537 79 HOH HOH . D 4 HOH A 72 538 80 HOH HOH . D 4 HOH A 73 539 82 HOH HOH . D 4 HOH A 74 540 83 HOH HOH . D 4 HOH A 75 541 84 HOH HOH . D 4 HOH A 76 542 85 HOH HOH . D 4 HOH A 77 543 86 HOH HOH . D 4 HOH A 78 544 87 HOH HOH . D 4 HOH A 79 545 88 HOH HOH . D 4 HOH A 80 546 89 HOH HOH . D 4 HOH A 81 547 90 HOH HOH . D 4 HOH A 82 548 91 HOH HOH . D 4 HOH A 83 549 92 HOH HOH . D 4 HOH A 84 550 93 HOH HOH . D 4 HOH A 85 551 94 HOH HOH . D 4 HOH A 86 552 95 HOH HOH . D 4 HOH A 87 553 96 HOH HOH . D 4 HOH A 88 554 97 HOH HOH . D 4 HOH A 89 555 98 HOH HOH . D 4 HOH A 90 556 99 HOH HOH . D 4 HOH A 91 557 100 HOH HOH . D 4 HOH A 92 558 101 HOH HOH . D 4 HOH A 93 559 102 HOH HOH . D 4 HOH A 94 560 103 HOH HOH . D 4 HOH A 95 561 104 HOH HOH . D 4 HOH A 96 562 105 HOH HOH . D 4 HOH A 97 563 106 HOH HOH . D 4 HOH A 98 564 107 HOH HOH . D 4 HOH A 99 565 108 HOH HOH . D 4 HOH A 100 566 109 HOH HOH . D 4 HOH A 101 567 110 HOH HOH . D 4 HOH A 102 568 111 HOH HOH . D 4 HOH A 103 569 113 HOH HOH . D 4 HOH A 104 570 115 HOH HOH . D 4 HOH A 105 571 116 HOH HOH . D 4 HOH A 106 572 117 HOH HOH . D 4 HOH A 107 573 118 HOH HOH . D 4 HOH A 108 574 119 HOH HOH . D 4 HOH A 109 575 120 HOH HOH . D 4 HOH A 110 576 121 HOH HOH . D 4 HOH A 111 577 122 HOH HOH . D 4 HOH A 112 578 124 HOH HOH . D 4 HOH A 113 579 125 HOH HOH . D 4 HOH A 114 580 126 HOH HOH . D 4 HOH A 115 581 127 HOH HOH . D 4 HOH A 116 582 129 HOH HOH . D 4 HOH A 117 583 130 HOH HOH . D 4 HOH A 118 584 131 HOH HOH . D 4 HOH A 119 585 132 HOH HOH . D 4 HOH A 120 586 133 HOH HOH . D 4 HOH A 121 587 134 HOH HOH . D 4 HOH A 122 588 135 HOH HOH . D 4 HOH A 123 589 136 HOH HOH . D 4 HOH A 124 590 137 HOH HOH . D 4 HOH A 125 591 138 HOH HOH . D 4 HOH A 126 592 139 HOH HOH . D 4 HOH A 127 593 140 HOH HOH . D 4 HOH A 128 594 143 HOH HOH . D 4 HOH A 129 595 144 HOH HOH . D 4 HOH A 130 596 145 HOH HOH . D 4 HOH A 131 597 146 HOH HOH . D 4 HOH A 132 598 147 HOH HOH . D 4 HOH A 133 599 148 HOH HOH . D 4 HOH A 134 601 149 HOH HOH . D 4 HOH A 135 602 150 HOH HOH . D 4 HOH A 136 603 152 HOH HOH . D 4 HOH A 137 604 153 HOH HOH . D 4 HOH A 138 605 154 HOH HOH . D 4 HOH A 139 606 156 HOH HOH . D 4 HOH A 140 607 157 HOH HOH . D 4 HOH A 141 608 158 HOH HOH . D 4 HOH A 142 609 159 HOH HOH . D 4 HOH A 143 610 161 HOH HOH . D 4 HOH A 144 611 162 HOH HOH . D 4 HOH A 145 612 164 HOH HOH . D 4 HOH A 146 613 165 HOH HOH . D 4 HOH A 147 614 166 HOH HOH . D 4 HOH A 148 615 167 HOH HOH . D 4 HOH A 149 616 168 HOH HOH . D 4 HOH A 150 617 169 HOH HOH . D 4 HOH A 151 618 170 HOH HOH . D 4 HOH A 152 619 172 HOH HOH . D 4 HOH A 153 620 173 HOH HOH . D 4 HOH A 154 621 175 HOH HOH . D 4 HOH A 155 622 176 HOH HOH . D 4 HOH A 156 623 177 HOH HOH . D 4 HOH A 157 624 178 HOH HOH . D 4 HOH A 158 625 179 HOH HOH . D 4 HOH A 159 626 180 HOH HOH . D 4 HOH A 160 627 181 HOH HOH . D 4 HOH A 161 628 182 HOH HOH . D 4 HOH A 162 629 183 HOH HOH . D 4 HOH A 163 630 185 HOH HOH . D 4 HOH A 164 631 187 HOH HOH . D 4 HOH A 165 632 188 HOH HOH . D 4 HOH A 166 633 191 HOH HOH . D 4 HOH A 167 634 193 HOH HOH . D 4 HOH A 168 635 194 HOH HOH . D 4 HOH A 169 636 195 HOH HOH . D 4 HOH A 170 637 196 HOH HOH . D 4 HOH A 171 638 198 HOH HOH . D 4 HOH A 172 639 199 HOH HOH . D 4 HOH A 173 640 200 HOH HOH . D 4 HOH A 174 641 203 HOH HOH . D 4 HOH A 175 642 204 HOH HOH . D 4 HOH A 176 643 205 HOH HOH . D 4 HOH A 177 644 206 HOH HOH . D 4 HOH A 178 645 209 HOH HOH . D 4 HOH A 179 646 213 HOH HOH . D 4 HOH A 180 647 214 HOH HOH . D 4 HOH A 181 648 215 HOH HOH . D 4 HOH A 182 649 216 HOH HOH . D 4 HOH A 183 650 217 HOH HOH . D 4 HOH A 184 651 219 HOH HOH . D 4 HOH A 185 652 220 HOH HOH . D 4 HOH A 186 653 221 HOH HOH . D 4 HOH A 187 654 222 HOH HOH . D 4 HOH A 188 655 223 HOH HOH . D 4 HOH A 189 656 225 HOH HOH . D 4 HOH A 190 657 226 HOH HOH . D 4 HOH A 191 658 227 HOH HOH . D 4 HOH A 192 659 230 HOH HOH . D 4 HOH A 193 660 231 HOH HOH . D 4 HOH A 194 661 232 HOH HOH . D 4 HOH A 195 662 233 HOH HOH . D 4 HOH A 196 663 234 HOH HOH . D 4 HOH A 197 664 235 HOH HOH . D 4 HOH A 198 665 236 HOH HOH . D 4 HOH A 199 666 237 HOH HOH . D 4 HOH A 200 667 238 HOH HOH . D 4 HOH A 201 668 241 HOH HOH . D 4 HOH A 202 669 243 HOH HOH . D 4 HOH A 203 670 246 HOH HOH . D 4 HOH A 204 671 249 HOH HOH . D 4 HOH A 205 672 250 HOH HOH . D 4 HOH A 206 673 251 HOH HOH . D 4 HOH A 207 674 253 HOH HOH . D 4 HOH A 208 675 256 HOH HOH . D 4 HOH A 209 676 257 HOH HOH . D 4 HOH A 210 677 261 HOH HOH . D 4 HOH A 211 678 262 HOH HOH . D 4 HOH A 212 679 263 HOH HOH . D 4 HOH A 213 680 266 HOH HOH . D 4 HOH A 214 681 267 HOH HOH . D 4 HOH A 215 682 268 HOH HOH . D 4 HOH A 216 683 270 HOH HOH . D 4 HOH A 217 684 271 HOH HOH . D 4 HOH A 218 685 272 HOH HOH . D 4 HOH A 219 686 273 HOH HOH . D 4 HOH A 220 687 274 HOH HOH . D 4 HOH A 221 688 275 HOH HOH . D 4 HOH A 222 689 278 HOH HOH . D 4 HOH A 223 690 279 HOH HOH . D 4 HOH A 224 691 280 HOH HOH . D 4 HOH A 225 692 281 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . B 2 -26.795 -5.389 12.259 1 14.47 ? C1 GLC 500 A 1 HETATM 2 C C2 GLC . . . B 2 -25.93 -6.238 13.214 1 12.7 ? C2 GLC 500 A 1 HETATM 3 C C3 GLC . . . B 2 -24.927 -5.219 13.804 1 12.21 ? C3 GLC 500 A 1 HETATM 4 C C4 GLC . . . B 2 -24.362 -4.259 12.733 1 11.94 ? C4 GLC 500 A 1 HETATM 5 C C5 GLC . . . B 2 -25.395 -3.634 11.77 1 9.81 ? C5 GLC 500 A 1 HETATM 6 C C6 GLC . . . B 2 -24.702 -2.817 10.676 1 11.27 ? C6 GLC 500 A 1 HETATM 7 O O1 GLC . . . B 2 -27.797 -4.691 12.958 1 16.04 ? O1 GLC 500 A 1 HETATM 8 O O2 GLC . . . B 2 -26.685 -6.857 14.217 1 12.24 ? O2 GLC 500 A 1 HETATM 9 O O3 GLC . . . B 2 -23.813 -5.834 14.438 1 13.03 ? O3 GLC 500 A 1 HETATM 10 O O4 GLC . . . B 2 -23.55 -3.28 13.385 1 12.91 ? O4 GLC 500 A 1 HETATM 11 O O5 GLC . . . B 2 -26.292 -4.614 11.184 1 12.34 ? O5 GLC 500 A 1 HETATM 12 O O6 GLC . . . B 2 -23.972 -3.676 9.801 1 9.2 ? O6 GLC 500 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #