data_3IDO # _model_server_result.job_id lhWJYL_vRppENY6jqa29Qw _model_server_result.datetime_utc '2025-03-13 17:49:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ido # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3IDO # _exptl.entry_id 3IDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IDO _cell.length_a 60.579 _cell.length_b 70.409 _cell.length_c 79.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 3IDO _atom_sites.fract_transf_matrix[1][1] 0.016507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 201 201 EPE EPE . D 2 EPE B 1 201 201 EPE EPE . E 3 HOH A 1 158 1 HOH HOH . E 3 HOH A 2 159 2 HOH HOH . E 3 HOH A 3 160 4 HOH HOH . E 3 HOH A 4 161 6 HOH HOH . E 3 HOH A 5 162 7 HOH HOH . E 3 HOH A 6 163 8 HOH HOH . E 3 HOH A 7 164 12 HOH HOH . E 3 HOH A 8 165 16 HOH HOH . E 3 HOH A 9 166 21 HOH HOH . E 3 HOH A 10 167 22 HOH HOH . E 3 HOH A 11 168 23 HOH HOH . E 3 HOH A 12 169 25 HOH HOH . E 3 HOH A 13 170 28 HOH HOH . E 3 HOH A 14 171 31 HOH HOH . E 3 HOH A 15 172 32 HOH HOH . E 3 HOH A 16 173 33 HOH HOH . E 3 HOH A 17 174 34 HOH HOH . E 3 HOH A 18 175 35 HOH HOH . E 3 HOH A 19 176 38 HOH HOH . E 3 HOH A 20 177 40 HOH HOH . E 3 HOH A 21 178 41 HOH HOH . E 3 HOH A 22 179 42 HOH HOH . E 3 HOH A 23 180 44 HOH HOH . E 3 HOH A 24 181 45 HOH HOH . E 3 HOH A 25 182 46 HOH HOH . E 3 HOH A 26 183 47 HOH HOH . E 3 HOH A 27 184 48 HOH HOH . E 3 HOH A 28 185 50 HOH HOH . E 3 HOH A 29 186 51 HOH HOH . E 3 HOH A 30 187 52 HOH HOH . E 3 HOH A 31 188 53 HOH HOH . E 3 HOH A 32 189 54 HOH HOH . E 3 HOH A 33 190 55 HOH HOH . E 3 HOH A 34 191 56 HOH HOH . E 3 HOH A 35 192 57 HOH HOH . E 3 HOH A 36 193 59 HOH HOH . E 3 HOH A 37 194 60 HOH HOH . E 3 HOH A 38 195 61 HOH HOH . E 3 HOH A 39 196 62 HOH HOH . E 3 HOH A 40 197 63 HOH HOH . E 3 HOH A 41 198 64 HOH HOH . E 3 HOH A 42 199 65 HOH HOH . E 3 HOH A 43 200 66 HOH HOH . E 3 HOH A 44 202 67 HOH HOH . E 3 HOH A 45 203 68 HOH HOH . E 3 HOH A 46 204 69 HOH HOH . E 3 HOH A 47 205 70 HOH HOH . E 3 HOH A 48 206 71 HOH HOH . E 3 HOH A 49 207 82 HOH HOH . E 3 HOH A 50 208 83 HOH HOH . E 3 HOH A 51 209 84 HOH HOH . E 3 HOH A 52 210 85 HOH HOH . E 3 HOH A 53 211 86 HOH HOH . E 3 HOH A 54 212 87 HOH HOH . E 3 HOH A 55 213 88 HOH HOH . E 3 HOH A 56 214 89 HOH HOH . E 3 HOH A 57 215 90 HOH HOH . E 3 HOH A 58 216 91 HOH HOH . E 3 HOH A 59 217 92 HOH HOH . E 3 HOH A 60 218 99 HOH HOH . E 3 HOH A 61 219 100 HOH HOH . E 3 HOH A 62 220 101 HOH HOH . E 3 HOH A 63 221 102 HOH HOH . E 3 HOH A 64 222 103 HOH HOH . E 3 HOH A 65 223 104 HOH HOH . E 3 HOH A 66 224 105 HOH HOH . E 3 HOH A 67 225 106 HOH HOH . E 3 HOH A 68 226 107 HOH HOH . E 3 HOH A 69 227 109 HOH HOH . E 3 HOH A 70 228 110 HOH HOH . E 3 HOH A 71 229 111 HOH HOH . E 3 HOH A 72 230 112 HOH HOH . E 3 HOH A 73 231 113 HOH HOH . E 3 HOH A 74 232 114 HOH HOH . E 3 HOH A 75 233 125 HOH HOH . E 3 HOH A 76 234 127 HOH HOH . E 3 HOH A 77 235 128 HOH HOH . E 3 HOH A 78 236 129 HOH HOH . E 3 HOH A 79 237 130 HOH HOH . F 3 HOH B 1 158 3 HOH HOH . F 3 HOH B 2 159 5 HOH HOH . F 3 HOH B 3 160 9 HOH HOH . F 3 HOH B 4 161 10 HOH HOH . F 3 HOH B 5 162 11 HOH HOH . F 3 HOH B 6 163 13 HOH HOH . F 3 HOH B 7 164 14 HOH HOH . F 3 HOH B 8 165 15 HOH HOH . F 3 HOH B 9 166 17 HOH HOH . F 3 HOH B 10 167 18 HOH HOH . F 3 HOH B 11 168 19 HOH HOH . F 3 HOH B 12 169 20 HOH HOH . F 3 HOH B 13 170 24 HOH HOH . F 3 HOH B 14 171 26 HOH HOH . F 3 HOH B 15 172 27 HOH HOH . F 3 HOH B 16 173 29 HOH HOH . F 3 HOH B 17 174 30 HOH HOH . F 3 HOH B 18 175 36 HOH HOH . F 3 HOH B 19 176 37 HOH HOH . F 3 HOH B 20 177 39 HOH HOH . F 3 HOH B 21 178 43 HOH HOH . F 3 HOH B 22 179 49 HOH HOH . F 3 HOH B 23 180 58 HOH HOH . F 3 HOH B 24 181 72 HOH HOH . F 3 HOH B 25 182 73 HOH HOH . F 3 HOH B 26 183 74 HOH HOH . F 3 HOH B 27 184 75 HOH HOH . F 3 HOH B 28 185 76 HOH HOH . F 3 HOH B 29 186 77 HOH HOH . F 3 HOH B 30 187 78 HOH HOH . F 3 HOH B 31 188 79 HOH HOH . F 3 HOH B 32 189 80 HOH HOH . F 3 HOH B 33 190 81 HOH HOH . F 3 HOH B 34 191 93 HOH HOH . F 3 HOH B 35 192 94 HOH HOH . F 3 HOH B 36 193 95 HOH HOH . F 3 HOH B 37 194 96 HOH HOH . F 3 HOH B 38 195 97 HOH HOH . F 3 HOH B 39 196 98 HOH HOH . F 3 HOH B 40 197 108 HOH HOH . F 3 HOH B 41 198 115 HOH HOH . F 3 HOH B 42 199 116 HOH HOH . F 3 HOH B 43 200 117 HOH HOH . F 3 HOH B 44 202 118 HOH HOH . F 3 HOH B 45 203 119 HOH HOH . F 3 HOH B 46 204 120 HOH HOH . F 3 HOH B 47 205 121 HOH HOH . F 3 HOH B 48 206 122 HOH HOH . F 3 HOH B 49 207 123 HOH HOH . F 3 HOH B 50 208 124 HOH HOH . F 3 HOH B 51 209 126 HOH HOH . F 3 HOH B 52 210 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 2 66.757 68.238 9.85 1 37.92 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . C 2 67.575 67.259 9.106 1 38.08 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . C 2 69.012 67.24 9.601 1 38.48 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . C 2 69.592 68.562 9.757 1 40.15 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . C 2 68.737 69.624 10.286 1 39.57 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . C 2 67.322 69.594 9.722 1 38.27 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . C 2 71.01 68.563 10.087 1 40.58 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . C 2 71.74 69.875 9.813 1 41.55 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . C 2 71.478 70.742 10.888 1 42.18 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . C 2 65.431 68.274 9.224 1 36.3 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . C 2 64.621 67.031 9.582 1 33.99 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . C 2 63.24 66.846 8.432 1 31.76 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . C 2 62.486 65.673 8.84 1 32.05 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . C 2 63.716 66.682 7.058 1 30.65 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . C 2 62.484 68.085 8.575 1 30.5 ? O3S EPE 201 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #