data_3IDU # _model_server_result.job_id 7buWH0G3hv4ZtL8Vyv5Z6A _model_server_result.datetime_utc '2025-01-10 03:09:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3idu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 3IDU # _exptl.entry_id 3IDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.44 _cell.angle_gamma 90 _cell.entry_id 3IDU _cell.length_a 24.551 _cell.length_b 72.665 _cell.length_c 58.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 88 A GLY 509 1_555 A N MSE 89 A MSE 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 89 A MSE 510 1_555 A N TYR 90 A TYR 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLY 88 B GLY 509 1_555 B N MSE 89 B MSE 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C MSE 89 B MSE 510 1_555 B N TYR 90 B TYR 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 G O HOH . A HOH 33 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A OD1 ASP 18 A ASP 439 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A O LEU 19 A LEU 440 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 A OD2 ASP 97 A ASP 518 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 A OD1 ASN 100 A ASN 521 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 A O VAL 102 A VAL 523 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc7 A OE1 GLU 104 A GLU 525 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc8 A OE2 GLU 104 A GLU 525 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc9 A O ASN 106 A ASN 527 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 A OE2 GLU 107 A GLU 528 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc11 A OD1 ASN 109 A ASN 530 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc12 A OD1 ASN 110 A ASN 531 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc13 H O HOH . B HOH 91 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc14 B OD1 ASP 18 B ASP 439 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc15 B O LEU 19 B LEU 440 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc16 B OD2 ASP 97 B ASP 518 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc17 B OD1 ASN 100 B ASN 521 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc18 B O VAL 102 B VAL 523 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc19 B OE1 GLU 104 B GLU 525 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc20 B OE2 GLU 104 B GLU 525 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc21 B O ASN 106 B ASN 527 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc22 B OE2 GLU 107 B GLU 528 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc23 B OD1 ASN 109 B ASN 530 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc24 B OD1 ASN 110 B ASN 531 1_555 E MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IDU _atom_sites.fract_transf_matrix[1][1] 0.040732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 601 MN MN . D 2 MN A 1 602 602 MN MN . E 2 MN B 1 601 601 MN MN . F 2 MN B 1 602 602 MN MN . G 3 HOH A 1 2 2 HOH HOH . G 3 HOH A 2 7 7 HOH HOH . G 3 HOH A 3 8 8 HOH HOH . G 3 HOH A 4 13 13 HOH HOH . G 3 HOH A 5 14 14 HOH HOH . G 3 HOH A 6 15 15 HOH HOH . G 3 HOH A 7 16 16 HOH HOH . G 3 HOH A 8 17 17 HOH HOH . G 3 HOH A 9 18 18 HOH HOH . G 3 HOH A 10 19 19 HOH HOH . G 3 HOH A 11 21 21 HOH HOH . G 3 HOH A 12 23 23 HOH HOH . G 3 HOH A 13 24 24 HOH HOH . G 3 HOH A 14 27 27 HOH HOH . G 3 HOH A 15 33 33 HOH HOH . G 3 HOH A 16 37 37 HOH HOH . G 3 HOH A 17 38 38 HOH HOH . G 3 HOH A 18 40 40 HOH HOH . G 3 HOH A 19 41 41 HOH HOH . G 3 HOH A 20 43 43 HOH HOH . G 3 HOH A 21 46 46 HOH HOH . G 3 HOH A 22 47 47 HOH HOH . G 3 HOH A 23 48 48 HOH HOH . G 3 HOH A 24 49 49 HOH HOH . G 3 HOH A 25 52 52 HOH HOH . G 3 HOH A 26 54 54 HOH HOH . G 3 HOH A 27 60 60 HOH HOH . G 3 HOH A 28 62 62 HOH HOH . G 3 HOH A 29 64 64 HOH HOH . G 3 HOH A 30 65 65 HOH HOH . G 3 HOH A 31 67 67 HOH HOH . G 3 HOH A 32 69 69 HOH HOH . G 3 HOH A 33 70 70 HOH HOH . G 3 HOH A 34 71 71 HOH HOH . G 3 HOH A 35 72 72 HOH HOH . G 3 HOH A 36 74 74 HOH HOH . G 3 HOH A 37 76 76 HOH HOH . G 3 HOH A 38 77 77 HOH HOH . G 3 HOH A 39 78 78 HOH HOH . G 3 HOH A 40 80 80 HOH HOH . G 3 HOH A 41 81 81 HOH HOH . G 3 HOH A 42 82 82 HOH HOH . G 3 HOH A 43 83 83 HOH HOH . G 3 HOH A 44 84 84 HOH HOH . G 3 HOH A 45 86 86 HOH HOH . G 3 HOH A 46 89 89 HOH HOH . G 3 HOH A 47 90 90 HOH HOH . G 3 HOH A 48 92 92 HOH HOH . G 3 HOH A 49 93 93 HOH HOH . G 3 HOH A 50 95 95 HOH HOH . G 3 HOH A 51 98 98 HOH HOH . G 3 HOH A 52 99 99 HOH HOH . G 3 HOH A 53 100 100 HOH HOH . G 3 HOH A 54 102 102 HOH HOH . G 3 HOH A 55 103 103 HOH HOH . G 3 HOH A 56 105 105 HOH HOH . G 3 HOH A 57 106 106 HOH HOH . G 3 HOH A 58 108 108 HOH HOH . G 3 HOH A 59 109 109 HOH HOH . G 3 HOH A 60 110 110 HOH HOH . G 3 HOH A 61 112 112 HOH HOH . G 3 HOH A 62 113 113 HOH HOH . G 3 HOH A 63 114 114 HOH HOH . G 3 HOH A 64 115 115 HOH HOH . G 3 HOH A 65 117 117 HOH HOH . G 3 HOH A 66 119 119 HOH HOH . G 3 HOH A 67 120 120 HOH HOH . G 3 HOH A 68 121 121 HOH HOH . G 3 HOH A 69 122 122 HOH HOH . G 3 HOH A 70 128 128 HOH HOH . G 3 HOH A 71 129 129 HOH HOH . G 3 HOH A 72 130 130 HOH HOH . G 3 HOH A 73 131 131 HOH HOH . G 3 HOH A 74 132 132 HOH HOH . G 3 HOH A 75 134 134 HOH HOH . G 3 HOH A 76 137 137 HOH HOH . G 3 HOH A 77 138 138 HOH HOH . G 3 HOH A 78 141 141 HOH HOH . G 3 HOH A 79 143 143 HOH HOH . G 3 HOH A 80 150 150 HOH HOH . G 3 HOH A 81 154 154 HOH HOH . G 3 HOH A 82 155 155 HOH HOH . G 3 HOH A 83 158 158 HOH HOH . G 3 HOH A 84 159 159 HOH HOH . G 3 HOH A 85 160 160 HOH HOH . G 3 HOH A 86 162 162 HOH HOH . G 3 HOH A 87 164 164 HOH HOH . G 3 HOH A 88 165 165 HOH HOH . G 3 HOH A 89 166 166 HOH HOH . G 3 HOH A 90 169 169 HOH HOH . G 3 HOH A 91 173 173 HOH HOH . G 3 HOH A 92 174 174 HOH HOH . G 3 HOH A 93 176 176 HOH HOH . G 3 HOH A 94 177 177 HOH HOH . G 3 HOH A 95 178 178 HOH HOH . G 3 HOH A 96 179 179 HOH HOH . G 3 HOH A 97 180 180 HOH HOH . G 3 HOH A 98 181 181 HOH HOH . G 3 HOH A 99 182 182 HOH HOH . G 3 HOH A 100 183 183 HOH HOH . G 3 HOH A 101 184 184 HOH HOH . G 3 HOH A 102 195 195 HOH HOH . G 3 HOH A 103 202 202 HOH HOH . H 3 HOH B 1 1 1 HOH HOH . H 3 HOH B 2 3 3 HOH HOH . H 3 HOH B 3 4 4 HOH HOH . H 3 HOH B 4 5 5 HOH HOH . H 3 HOH B 5 6 6 HOH HOH . H 3 HOH B 6 9 9 HOH HOH . H 3 HOH B 7 10 10 HOH HOH . H 3 HOH B 8 11 11 HOH HOH . H 3 HOH B 9 12 12 HOH HOH . H 3 HOH B 10 20 20 HOH HOH . H 3 HOH B 11 22 22 HOH HOH . H 3 HOH B 12 25 25 HOH HOH . H 3 HOH B 13 26 26 HOH HOH . H 3 HOH B 14 28 28 HOH HOH . H 3 HOH B 15 29 29 HOH HOH . H 3 HOH B 16 30 30 HOH HOH . H 3 HOH B 17 31 31 HOH HOH . H 3 HOH B 18 32 32 HOH HOH . H 3 HOH B 19 34 34 HOH HOH . H 3 HOH B 20 35 35 HOH HOH . H 3 HOH B 21 36 36 HOH HOH . H 3 HOH B 22 39 39 HOH HOH . H 3 HOH B 23 42 42 HOH HOH . H 3 HOH B 24 44 44 HOH HOH . H 3 HOH B 25 45 45 HOH HOH . H 3 HOH B 26 50 50 HOH HOH . H 3 HOH B 27 51 51 HOH HOH . H 3 HOH B 28 53 53 HOH HOH . H 3 HOH B 29 55 55 HOH HOH . H 3 HOH B 30 56 56 HOH HOH . H 3 HOH B 31 57 57 HOH HOH . H 3 HOH B 32 58 58 HOH HOH . H 3 HOH B 33 59 59 HOH HOH . H 3 HOH B 34 61 61 HOH HOH . H 3 HOH B 35 63 63 HOH HOH . H 3 HOH B 36 66 66 HOH HOH . H 3 HOH B 37 68 68 HOH HOH . H 3 HOH B 38 73 73 HOH HOH . H 3 HOH B 39 75 75 HOH HOH . H 3 HOH B 40 79 79 HOH HOH . H 3 HOH B 41 85 85 HOH HOH . H 3 HOH B 42 87 87 HOH HOH . H 3 HOH B 43 88 88 HOH HOH . H 3 HOH B 44 91 91 HOH HOH . H 3 HOH B 45 94 94 HOH HOH . H 3 HOH B 46 96 96 HOH HOH . H 3 HOH B 47 97 97 HOH HOH . H 3 HOH B 48 101 101 HOH HOH . H 3 HOH B 49 104 104 HOH HOH . H 3 HOH B 50 107 107 HOH HOH . H 3 HOH B 51 111 111 HOH HOH . H 3 HOH B 52 116 116 HOH HOH . H 3 HOH B 53 118 118 HOH HOH . H 3 HOH B 54 123 123 HOH HOH . H 3 HOH B 55 124 124 HOH HOH . H 3 HOH B 56 125 125 HOH HOH . H 3 HOH B 57 126 126 HOH HOH . H 3 HOH B 58 127 127 HOH HOH . H 3 HOH B 59 133 133 HOH HOH . H 3 HOH B 60 135 135 HOH HOH . H 3 HOH B 61 136 136 HOH HOH . H 3 HOH B 62 139 139 HOH HOH . H 3 HOH B 63 140 140 HOH HOH . H 3 HOH B 64 142 142 HOH HOH . H 3 HOH B 65 144 144 HOH HOH . H 3 HOH B 66 145 145 HOH HOH . H 3 HOH B 67 146 146 HOH HOH . H 3 HOH B 68 147 147 HOH HOH . H 3 HOH B 69 148 148 HOH HOH . H 3 HOH B 70 149 149 HOH HOH . H 3 HOH B 71 151 151 HOH HOH . H 3 HOH B 72 152 152 HOH HOH . H 3 HOH B 73 153 153 HOH HOH . H 3 HOH B 74 156 156 HOH HOH . H 3 HOH B 75 157 157 HOH HOH . H 3 HOH B 76 161 161 HOH HOH . H 3 HOH B 77 163 163 HOH HOH . H 3 HOH B 78 167 167 HOH HOH . H 3 HOH B 79 168 168 HOH HOH . H 3 HOH B 80 170 170 HOH HOH . H 3 HOH B 81 171 171 HOH HOH . H 3 HOH B 82 172 172 HOH HOH . H 3 HOH B 83 175 175 HOH HOH . H 3 HOH B 84 185 185 HOH HOH . H 3 HOH B 85 186 186 HOH HOH . H 3 HOH B 86 187 187 HOH HOH . H 3 HOH B 87 188 188 HOH HOH . H 3 HOH B 88 189 189 HOH HOH . H 3 HOH B 89 190 190 HOH HOH . H 3 HOH B 90 191 191 HOH HOH . H 3 HOH B 91 192 192 HOH HOH . H 3 HOH B 92 193 193 HOH HOH . H 3 HOH B 93 194 194 HOH HOH . H 3 HOH B 94 196 196 HOH HOH . H 3 HOH B 95 197 197 HOH HOH . H 3 HOH B 96 198 198 HOH HOH . H 3 HOH B 97 199 199 HOH HOH . H 3 HOH B 98 200 200 HOH HOH . H 3 HOH B 99 201 201 HOH HOH . H 3 HOH B 100 203 203 HOH HOH . H 3 HOH B 101 204 204 HOH HOH . H 3 HOH B 102 205 205 HOH HOH . H 3 HOH B 103 206 206 HOH HOH . H 3 HOH B 104 207 207 HOH HOH . H 3 HOH B 105 208 208 HOH HOH . H 3 HOH B 106 209 209 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.224 _atom_site.Cartn_y 20.977 _atom_site.Cartn_z 20.46 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #