data_3IEH # _model_server_result.job_id Hm0tOmr89uFfUKZGmsTW6Q _model_server_result.datetime_utc '2024-11-13 07:06:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ieh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":280}' # _entry.id 3IEH # _exptl.entry_id 3IEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IEH _cell.length_a 80.958 _cell.length_b 80.958 _cell.length_c 87.94 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 35 A GLU 34 1_555 A N MSE 36 A MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 36 A MSE 35 1_555 A N THR 37 A THR 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C GLY 40 A GLY 39 1_555 A N MSE 41 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 41 A MSE 40 1_555 A N VAL 42 A VAL 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ALA 263 A ALA 262 1_555 A N MSE 264 A MSE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 264 A MSE 263 1_555 A N THR 265 A THR 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A ND1 HIS 76 A HIS 75 1_555 B ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A OE1 GLU 79 A GLU 78 1_555 B ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 B ZN ZN . A ZN 276 1_555 O O HOH . A HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3IEH _atom_sites.fract_transf_matrix[1][1] 0.012352 _atom_sites.fract_transf_matrix[1][2] 0.007131 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 276 1 ZN ZN . C 3 UNL A 1 277 2 UNL UNL . D 4 GOL A 1 278 3 GOL GOL . E 4 GOL A 1 279 4 GOL GOL . F 4 GOL A 1 280 5 GOL GOL . G 4 GOL A 1 281 6 GOL GOL . H 4 GOL A 1 282 7 GOL GOL . I 4 GOL A 1 283 8 GOL GOL . J 5 PEG A 1 284 9 PEG PEG . K 5 PEG A 1 285 10 PEG PEG . L 5 PEG A 1 286 11 PEG PEG . M 6 PGE A 1 287 12 PGE PGE . N 6 PGE A 1 288 13 PGE PGE . O 7 HOH A 1 289 14 HOH HOH . O 7 HOH A 2 290 15 HOH HOH . O 7 HOH A 3 291 16 HOH HOH . O 7 HOH A 4 292 17 HOH HOH . O 7 HOH A 5 293 18 HOH HOH . O 7 HOH A 6 294 19 HOH HOH . O 7 HOH A 7 295 20 HOH HOH . O 7 HOH A 8 296 21 HOH HOH . O 7 HOH A 9 297 22 HOH HOH . O 7 HOH A 10 298 23 HOH HOH . O 7 HOH A 11 299 24 HOH HOH . O 7 HOH A 12 300 25 HOH HOH . O 7 HOH A 13 301 26 HOH HOH . O 7 HOH A 14 302 27 HOH HOH . O 7 HOH A 15 303 28 HOH HOH . O 7 HOH A 16 304 29 HOH HOH . O 7 HOH A 17 305 30 HOH HOH . O 7 HOH A 18 306 31 HOH HOH . O 7 HOH A 19 307 32 HOH HOH . O 7 HOH A 20 308 33 HOH HOH . O 7 HOH A 21 309 34 HOH HOH . O 7 HOH A 22 310 35 HOH HOH . O 7 HOH A 23 311 36 HOH HOH . O 7 HOH A 24 312 37 HOH HOH . O 7 HOH A 25 313 38 HOH HOH . O 7 HOH A 26 314 39 HOH HOH . O 7 HOH A 27 315 40 HOH HOH . O 7 HOH A 28 316 41 HOH HOH . O 7 HOH A 29 317 42 HOH HOH . O 7 HOH A 30 318 43 HOH HOH . O 7 HOH A 31 319 44 HOH HOH . O 7 HOH A 32 320 45 HOH HOH . O 7 HOH A 33 321 46 HOH HOH . O 7 HOH A 34 322 47 HOH HOH . O 7 HOH A 35 323 48 HOH HOH . O 7 HOH A 36 324 49 HOH HOH . O 7 HOH A 37 325 50 HOH HOH . O 7 HOH A 38 326 51 HOH HOH . O 7 HOH A 39 327 52 HOH HOH . O 7 HOH A 40 328 53 HOH HOH . O 7 HOH A 41 329 54 HOH HOH . O 7 HOH A 42 330 55 HOH HOH . O 7 HOH A 43 331 56 HOH HOH . O 7 HOH A 44 332 57 HOH HOH . O 7 HOH A 45 333 58 HOH HOH . O 7 HOH A 46 334 59 HOH HOH . O 7 HOH A 47 335 60 HOH HOH . O 7 HOH A 48 336 61 HOH HOH . O 7 HOH A 49 337 62 HOH HOH . O 7 HOH A 50 338 63 HOH HOH . O 7 HOH A 51 339 64 HOH HOH . O 7 HOH A 52 340 65 HOH HOH . O 7 HOH A 53 341 66 HOH HOH . O 7 HOH A 54 342 67 HOH HOH . O 7 HOH A 55 343 68 HOH HOH . O 7 HOH A 56 344 69 HOH HOH . O 7 HOH A 57 345 70 HOH HOH . O 7 HOH A 58 346 71 HOH HOH . O 7 HOH A 59 347 72 HOH HOH . O 7 HOH A 60 348 73 HOH HOH . O 7 HOH A 61 349 74 HOH HOH . O 7 HOH A 62 350 75 HOH HOH . O 7 HOH A 63 351 76 HOH HOH . O 7 HOH A 64 352 77 HOH HOH . O 7 HOH A 65 353 78 HOH HOH . O 7 HOH A 66 354 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 21.425 39.606 -13.068 1 58.03 ? C1 GOL 280 A 1 HETATM 2 O O1 GOL . . . F 4 20.248 38.882 -12.782 1 52.66 ? O1 GOL 280 A 1 HETATM 3 C C2 GOL . . . F 4 22.563 38.601 -13.07 1 64.34 ? C2 GOL 280 A 1 HETATM 4 O O2 GOL . . . F 4 23.809 39.204 -12.805 1 61.34 ? O2 GOL 280 A 1 HETATM 5 C C3 GOL . . . F 4 22.601 37.834 -14.385 1 67.12 ? C3 GOL 280 A 1 HETATM 6 O O3 GOL . . . F 4 22.89 36.478 -14.1 1 71.45 ? O3 GOL 280 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #