data_3IEW # _model_server_result.job_id DvzSshEPGHZdaHRrjnv5pQ _model_server_result.datetime_utc '2024-11-06 01:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":163}' # _entry.id 3IEW # _exptl.entry_id 3IEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.85 _cell.angle_gamma 90 _cell.entry_id 3IEW _cell.length_a 117.703 _cell.length_b 67.548 _cell.length_c 60.152 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 31 A ASP 10 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A NE2 HIS 33 A HIS 12 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 A ND1 HIS 65 A HIS 44 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc4 D ZN ZN . A ZN 801 1_555 F O2B CTP . B CTP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 B OD2 ASP 31 B ASP 10 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 B NE2 HIS 33 B HIS 12 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc7 B ND1 HIS 65 B HIS 44 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 G ZN ZN . B ZN 801 1_555 I O2B CDP . C CDP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 C OD2 ASP 31 C ASP 10 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 C NE2 HIS 33 C HIS 12 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc11 C ND1 HIS 65 C HIS 44 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 216 n n C1 C2 GOL sing 217 n n C1 H11 GOL sing 218 n n C1 H12 GOL sing 219 n n O1 HO1 GOL sing 220 n n C2 O2 GOL sing 221 n n C2 C3 GOL sing 222 n n C2 H2 GOL sing 223 n n O2 HO2 GOL sing 224 n n C3 O3 GOL sing 225 n n C3 H31 GOL sing 226 n n C3 H32 GOL sing 227 n n O3 HO3 GOL sing 228 n n # _atom_sites.entry_id 3IEW _atom_sites.fract_transf_matrix[1][1] 0.008496 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000871 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN A 1 801 801 ZN ZN . E 3 CDP A 1 901 901 CDP CDP . F 4 CTP B 1 901 901 CTP CTP . G 2 ZN B 1 801 801 ZN ZN . H 5 GOL B 1 163 1 GOL GOL . I 3 CDP C 1 901 901 CDP CDP . J 2 ZN C 1 801 801 ZN ZN . K 6 HOH A 1 163 1 HOH HOH . K 6 HOH A 2 164 2 HOH HOH . K 6 HOH A 3 165 7 HOH HOH . K 6 HOH A 4 166 8 HOH HOH . K 6 HOH A 5 167 9 HOH HOH . K 6 HOH A 6 168 13 HOH HOH . K 6 HOH A 7 169 15 HOH HOH . K 6 HOH A 8 170 16 HOH HOH . K 6 HOH A 9 171 17 HOH HOH . K 6 HOH A 10 172 18 HOH HOH . K 6 HOH A 11 173 22 HOH HOH . K 6 HOH A 12 174 24 HOH HOH . K 6 HOH A 13 175 25 HOH HOH . K 6 HOH A 14 176 26 HOH HOH . K 6 HOH A 15 177 30 HOH HOH . K 6 HOH A 16 178 31 HOH HOH . K 6 HOH A 17 179 32 HOH HOH . K 6 HOH A 18 180 34 HOH HOH . K 6 HOH A 19 181 36 HOH HOH . K 6 HOH A 20 182 42 HOH HOH . K 6 HOH A 21 183 45 HOH HOH . K 6 HOH A 22 184 48 HOH HOH . K 6 HOH A 23 185 51 HOH HOH . K 6 HOH A 24 186 55 HOH HOH . K 6 HOH A 25 187 56 HOH HOH . K 6 HOH A 26 188 58 HOH HOH . K 6 HOH A 27 189 61 HOH HOH . K 6 HOH A 28 190 62 HOH HOH . K 6 HOH A 29 191 64 HOH HOH . K 6 HOH A 30 192 65 HOH HOH . K 6 HOH A 31 193 67 HOH HOH . K 6 HOH A 32 194 70 HOH HOH . K 6 HOH A 33 195 71 HOH HOH . K 6 HOH A 34 196 72 HOH HOH . K 6 HOH A 35 197 76 HOH HOH . K 6 HOH A 36 198 80 HOH HOH . K 6 HOH A 37 199 83 HOH HOH . K 6 HOH A 38 200 84 HOH HOH . K 6 HOH A 39 201 85 HOH HOH . K 6 HOH A 40 202 87 HOH HOH . K 6 HOH A 41 203 91 HOH HOH . K 6 HOH A 42 204 93 HOH HOH . K 6 HOH A 43 205 94 HOH HOH . K 6 HOH A 44 206 98 HOH HOH . K 6 HOH A 45 207 100 HOH HOH . K 6 HOH A 46 208 101 HOH HOH . K 6 HOH A 47 209 104 HOH HOH . K 6 HOH A 48 210 105 HOH HOH . K 6 HOH A 49 211 107 HOH HOH . K 6 HOH A 50 212 109 HOH HOH . K 6 HOH A 51 213 112 HOH HOH . K 6 HOH A 52 214 113 HOH HOH . K 6 HOH A 53 215 120 HOH HOH . K 6 HOH A 54 216 124 HOH HOH . K 6 HOH A 55 217 126 HOH HOH . K 6 HOH A 56 218 129 HOH HOH . K 6 HOH A 57 219 130 HOH HOH . K 6 HOH A 58 220 131 HOH HOH . K 6 HOH A 59 221 133 HOH HOH . K 6 HOH A 60 222 134 HOH HOH . K 6 HOH A 61 223 135 HOH HOH . K 6 HOH A 62 224 90 HOH HOH . L 6 HOH B 1 164 3 HOH HOH . L 6 HOH B 2 165 4 HOH HOH . L 6 HOH B 3 166 5 HOH HOH . L 6 HOH B 4 167 10 HOH HOH . L 6 HOH B 5 168 11 HOH HOH . L 6 HOH B 6 169 12 HOH HOH . L 6 HOH B 7 170 21 HOH HOH . L 6 HOH B 8 171 23 HOH HOH . L 6 HOH B 9 172 28 HOH HOH . L 6 HOH B 10 173 33 HOH HOH . L 6 HOH B 11 174 43 HOH HOH . L 6 HOH B 12 175 44 HOH HOH . L 6 HOH B 13 176 46 HOH HOH . L 6 HOH B 14 177 47 HOH HOH . L 6 HOH B 15 178 49 HOH HOH . L 6 HOH B 16 179 54 HOH HOH . L 6 HOH B 17 180 57 HOH HOH . L 6 HOH B 18 181 60 HOH HOH . L 6 HOH B 19 182 66 HOH HOH . L 6 HOH B 20 183 74 HOH HOH . L 6 HOH B 21 184 75 HOH HOH . L 6 HOH B 22 185 77 HOH HOH . L 6 HOH B 23 186 88 HOH HOH . L 6 HOH B 24 187 89 HOH HOH . L 6 HOH B 25 188 95 HOH HOH . L 6 HOH B 26 189 96 HOH HOH . L 6 HOH B 27 190 97 HOH HOH . L 6 HOH B 28 191 99 HOH HOH . L 6 HOH B 29 192 102 HOH HOH . L 6 HOH B 30 194 110 HOH HOH . L 6 HOH B 31 195 111 HOH HOH . L 6 HOH B 32 196 115 HOH HOH . L 6 HOH B 33 197 117 HOH HOH . L 6 HOH B 34 198 118 HOH HOH . L 6 HOH B 35 199 119 HOH HOH . L 6 HOH B 36 200 123 HOH HOH . L 6 HOH B 37 201 125 HOH HOH . L 6 HOH B 38 202 127 HOH HOH . M 6 HOH C 1 163 6 HOH HOH . M 6 HOH C 2 164 14 HOH HOH . M 6 HOH C 3 165 19 HOH HOH . M 6 HOH C 4 166 20 HOH HOH . M 6 HOH C 5 167 27 HOH HOH . M 6 HOH C 6 168 29 HOH HOH . M 6 HOH C 7 169 35 HOH HOH . M 6 HOH C 8 170 37 HOH HOH . M 6 HOH C 9 171 38 HOH HOH . M 6 HOH C 10 172 39 HOH HOH . M 6 HOH C 11 173 41 HOH HOH . M 6 HOH C 12 174 50 HOH HOH . M 6 HOH C 13 175 52 HOH HOH . M 6 HOH C 14 176 53 HOH HOH . M 6 HOH C 15 177 59 HOH HOH . M 6 HOH C 16 178 63 HOH HOH . M 6 HOH C 17 179 68 HOH HOH . M 6 HOH C 18 180 69 HOH HOH . M 6 HOH C 19 181 73 HOH HOH . M 6 HOH C 20 182 78 HOH HOH . M 6 HOH C 21 183 79 HOH HOH . M 6 HOH C 22 184 81 HOH HOH . M 6 HOH C 23 185 82 HOH HOH . M 6 HOH C 24 186 86 HOH HOH . M 6 HOH C 25 188 92 HOH HOH . M 6 HOH C 26 189 103 HOH HOH . M 6 HOH C 27 190 108 HOH HOH . M 6 HOH C 28 191 114 HOH HOH . M 6 HOH C 29 192 116 HOH HOH . M 6 HOH C 30 193 106 HOH HOH . M 6 HOH C 31 194 122 HOH HOH . M 6 HOH C 32 195 128 HOH HOH . M 6 HOH C 33 196 132 HOH HOH . M 6 HOH C 34 197 136 HOH HOH . M 6 HOH C 35 198 137 HOH HOH . M 6 HOH C 36 199 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 24.148 -32.179 -14.252 1 57.21 ? C1 GOL 163 B 1 HETATM 2 O O1 GOL . . . H 5 24.323 -32.25 -15.653 1 57.3 ? O1 GOL 163 B 1 HETATM 3 C C2 GOL . . . H 5 23.872 -30.735 -13.862 1 56.79 ? C2 GOL 163 B 1 HETATM 4 O O2 GOL . . . H 5 23.675 -30.612 -12.459 1 56.21 ? O2 GOL 163 B 1 HETATM 5 C C3 GOL . . . H 5 22.651 -30.259 -14.646 1 56.8 ? C3 GOL 163 B 1 HETATM 6 O O3 GOL . . . H 5 23.055 -29.6 -15.83 1 55.71 ? O3 GOL 163 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #