data_3IEW
#
_model_server_result.job_id            f9Piu2QJnp3P4cS-ZcbBIw 
_model_server_result.datetime_utc      '2024-11-23 07:40:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iew 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    3IEW 
#
_exptl.entry_id    3IEW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.85 
_cell.angle_gamma         90 
_cell.entry_id            3IEW 
_cell.length_a            117.703 
_cell.length_b            67.548 
_cell.length_c            60.152 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IEW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 31 A ASP 10 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 A NE2 HIS 33 A HIS 12 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc3 A ND1 HIS 65 A HIS 44 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc4 D ZN ZN . A ZN 801 1_555 F O2B CTP . B CTP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc5 B OD2 ASP 31 B ASP 10 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 B NE2 HIS 33 B HIS 12 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc7 B ND1 HIS 65 B HIS 44 1_555 G ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc8 G ZN ZN . B ZN 801 1_555 I O2B CDP . C CDP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc9 C OD2 ASP 31 C ASP 10 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc10 C NE2 HIS 33 C HIS 12 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc11 C ND1 HIS 65 C HIS 44 1_555 J ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CTP sing 111 n n 
N1 C6 CTP sing 112 n n 
N1 C1' CTP sing 113 n n 
C2 N3 CTP sing 114 n n 
C2 O2 CTP doub 115 n n 
N3 C4 CTP doub 116 n n 
C4 C5 CTP sing 117 n n 
C4 N4 CTP sing 118 n n 
C5 C6 CTP doub 119 n n 
C5 H5 CTP sing 120 n n 
C6 H6 CTP sing 121 n n 
N4 HN41 CTP sing 122 n n 
N4 HN42 CTP sing 123 n n 
C1' C2' CTP sing 124 n n 
C1' O4' CTP sing 125 n n 
C1' H1' CTP sing 126 n n 
C2' O2' CTP sing 127 n n 
C2' C3' CTP sing 128 n n 
C2' H2' CTP sing 129 n n 
O2' HO2' CTP sing 130 n n 
C3' C4' CTP sing 131 n n 
C3' O3' CTP sing 132 n n 
C3' H3' CTP sing 133 n n 
C4' O4' CTP sing 134 n n 
C4' C5' CTP sing 135 n n 
C4' H4' CTP sing 136 n n 
O3' HO3' CTP sing 137 n n 
C5' O5' CTP sing 138 n n 
C5' "H5'1" CTP sing 139 n n 
C5' "H5'2" CTP sing 140 n n 
O5' PA CTP sing 141 n n 
PA O1A CTP doub 142 n n 
PA O2A CTP sing 143 n n 
PA O3A CTP sing 144 n n 
O2A HOA2 CTP sing 145 n n 
O3A PB CTP sing 146 n n 
PB O1B CTP doub 147 n n 
PB O2B CTP sing 148 n n 
PB O3B CTP sing 149 n n 
O2B HOB2 CTP sing 150 n n 
O3B PG CTP sing 151 n n 
PG O1G CTP doub 152 n n 
PG O2G CTP sing 153 n n 
PG O3G CTP sing 154 n n 
O2G HOG2 CTP sing 155 n n 
O3G HOG3 CTP sing 156 n n 
#
_atom_sites.entry_id                     3IEW 
_atom_sites.fract_transf_matrix[1][1]    0.008496 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000871 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 801 801 ZN ZN . 
E 3 CDP A 1 901 901 CDP CDP . 
F 4 CTP B 1 901 901 CTP CTP . 
G 2 ZN B 1 801 801 ZN ZN . 
H 5 GOL B 1 163 1 GOL GOL . 
I 3 CDP C 1 901 901 CDP CDP . 
J 2 ZN C 1 801 801 ZN ZN . 
K 6 HOH A 1 163 1 HOH HOH . 
K 6 HOH A 2 164 2 HOH HOH . 
K 6 HOH A 3 165 7 HOH HOH . 
K 6 HOH A 4 166 8 HOH HOH . 
K 6 HOH A 5 167 9 HOH HOH . 
K 6 HOH A 6 168 13 HOH HOH . 
K 6 HOH A 7 169 15 HOH HOH . 
K 6 HOH A 8 170 16 HOH HOH . 
K 6 HOH A 9 171 17 HOH HOH . 
K 6 HOH A 10 172 18 HOH HOH . 
K 6 HOH A 11 173 22 HOH HOH . 
K 6 HOH A 12 174 24 HOH HOH . 
K 6 HOH A 13 175 25 HOH HOH . 
K 6 HOH A 14 176 26 HOH HOH . 
K 6 HOH A 15 177 30 HOH HOH . 
K 6 HOH A 16 178 31 HOH HOH . 
K 6 HOH A 17 179 32 HOH HOH . 
K 6 HOH A 18 180 34 HOH HOH . 
K 6 HOH A 19 181 36 HOH HOH . 
K 6 HOH A 20 182 42 HOH HOH . 
K 6 HOH A 21 183 45 HOH HOH . 
K 6 HOH A 22 184 48 HOH HOH . 
K 6 HOH A 23 185 51 HOH HOH . 
K 6 HOH A 24 186 55 HOH HOH . 
K 6 HOH A 25 187 56 HOH HOH . 
K 6 HOH A 26 188 58 HOH HOH . 
K 6 HOH A 27 189 61 HOH HOH . 
K 6 HOH A 28 190 62 HOH HOH . 
K 6 HOH A 29 191 64 HOH HOH . 
K 6 HOH A 30 192 65 HOH HOH . 
K 6 HOH A 31 193 67 HOH HOH . 
K 6 HOH A 32 194 70 HOH HOH . 
K 6 HOH A 33 195 71 HOH HOH . 
K 6 HOH A 34 196 72 HOH HOH . 
K 6 HOH A 35 197 76 HOH HOH . 
K 6 HOH A 36 198 80 HOH HOH . 
K 6 HOH A 37 199 83 HOH HOH . 
K 6 HOH A 38 200 84 HOH HOH . 
K 6 HOH A 39 201 85 HOH HOH . 
K 6 HOH A 40 202 87 HOH HOH . 
K 6 HOH A 41 203 91 HOH HOH . 
K 6 HOH A 42 204 93 HOH HOH . 
K 6 HOH A 43 205 94 HOH HOH . 
K 6 HOH A 44 206 98 HOH HOH . 
K 6 HOH A 45 207 100 HOH HOH . 
K 6 HOH A 46 208 101 HOH HOH . 
K 6 HOH A 47 209 104 HOH HOH . 
K 6 HOH A 48 210 105 HOH HOH . 
K 6 HOH A 49 211 107 HOH HOH . 
K 6 HOH A 50 212 109 HOH HOH . 
K 6 HOH A 51 213 112 HOH HOH . 
K 6 HOH A 52 214 113 HOH HOH . 
K 6 HOH A 53 215 120 HOH HOH . 
K 6 HOH A 54 216 124 HOH HOH . 
K 6 HOH A 55 217 126 HOH HOH . 
K 6 HOH A 56 218 129 HOH HOH . 
K 6 HOH A 57 219 130 HOH HOH . 
K 6 HOH A 58 220 131 HOH HOH . 
K 6 HOH A 59 221 133 HOH HOH . 
K 6 HOH A 60 222 134 HOH HOH . 
K 6 HOH A 61 223 135 HOH HOH . 
K 6 HOH A 62 224 90 HOH HOH . 
L 6 HOH B 1 164 3 HOH HOH . 
L 6 HOH B 2 165 4 HOH HOH . 
L 6 HOH B 3 166 5 HOH HOH . 
L 6 HOH B 4 167 10 HOH HOH . 
L 6 HOH B 5 168 11 HOH HOH . 
L 6 HOH B 6 169 12 HOH HOH . 
L 6 HOH B 7 170 21 HOH HOH . 
L 6 HOH B 8 171 23 HOH HOH . 
L 6 HOH B 9 172 28 HOH HOH . 
L 6 HOH B 10 173 33 HOH HOH . 
L 6 HOH B 11 174 43 HOH HOH . 
L 6 HOH B 12 175 44 HOH HOH . 
L 6 HOH B 13 176 46 HOH HOH . 
L 6 HOH B 14 177 47 HOH HOH . 
L 6 HOH B 15 178 49 HOH HOH . 
L 6 HOH B 16 179 54 HOH HOH . 
L 6 HOH B 17 180 57 HOH HOH . 
L 6 HOH B 18 181 60 HOH HOH . 
L 6 HOH B 19 182 66 HOH HOH . 
L 6 HOH B 20 183 74 HOH HOH . 
L 6 HOH B 21 184 75 HOH HOH . 
L 6 HOH B 22 185 77 HOH HOH . 
L 6 HOH B 23 186 88 HOH HOH . 
L 6 HOH B 24 187 89 HOH HOH . 
L 6 HOH B 25 188 95 HOH HOH . 
L 6 HOH B 26 189 96 HOH HOH . 
L 6 HOH B 27 190 97 HOH HOH . 
L 6 HOH B 28 191 99 HOH HOH . 
L 6 HOH B 29 192 102 HOH HOH . 
L 6 HOH B 30 194 110 HOH HOH . 
L 6 HOH B 31 195 111 HOH HOH . 
L 6 HOH B 32 196 115 HOH HOH . 
L 6 HOH B 33 197 117 HOH HOH . 
L 6 HOH B 34 198 118 HOH HOH . 
L 6 HOH B 35 199 119 HOH HOH . 
L 6 HOH B 36 200 123 HOH HOH . 
L 6 HOH B 37 201 125 HOH HOH . 
L 6 HOH B 38 202 127 HOH HOH . 
M 6 HOH C 1 163 6 HOH HOH . 
M 6 HOH C 2 164 14 HOH HOH . 
M 6 HOH C 3 165 19 HOH HOH . 
M 6 HOH C 4 166 20 HOH HOH . 
M 6 HOH C 5 167 27 HOH HOH . 
M 6 HOH C 6 168 29 HOH HOH . 
M 6 HOH C 7 169 35 HOH HOH . 
M 6 HOH C 8 170 37 HOH HOH . 
M 6 HOH C 9 171 38 HOH HOH . 
M 6 HOH C 10 172 39 HOH HOH . 
M 6 HOH C 11 173 41 HOH HOH . 
M 6 HOH C 12 174 50 HOH HOH . 
M 6 HOH C 13 175 52 HOH HOH . 
M 6 HOH C 14 176 53 HOH HOH . 
M 6 HOH C 15 177 59 HOH HOH . 
M 6 HOH C 16 178 63 HOH HOH . 
M 6 HOH C 17 179 68 HOH HOH . 
M 6 HOH C 18 180 69 HOH HOH . 
M 6 HOH C 19 181 73 HOH HOH . 
M 6 HOH C 20 182 78 HOH HOH . 
M 6 HOH C 21 183 79 HOH HOH . 
M 6 HOH C 22 184 81 HOH HOH . 
M 6 HOH C 23 185 82 HOH HOH . 
M 6 HOH C 24 186 86 HOH HOH . 
M 6 HOH C 25 188 92 HOH HOH . 
M 6 HOH C 26 189 103 HOH HOH . 
M 6 HOH C 27 190 108 HOH HOH . 
M 6 HOH C 28 191 114 HOH HOH . 
M 6 HOH C 29 192 116 HOH HOH . 
M 6 HOH C 30 193 106 HOH HOH . 
M 6 HOH C 31 194 122 HOH HOH . 
M 6 HOH C 32 195 128 HOH HOH . 
M 6 HOH C 33 196 132 HOH HOH . 
M 6 HOH C 34 197 136 HOH HOH . 
M 6 HOH C 35 198 137 HOH HOH . 
M 6 HOH C 36 199 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . F 4 10.477 -27.172 -24.344 1 40.67 ? N1 CTP 901 B 1 
HETATM 2 C C2 CTP . . . F 4 10.899 -27.272 -25.655 1 40.56 ? C2 CTP 901 B 1 
HETATM 3 N N3 CTP . . . F 4 12.145 -26.792 -26.034 1 42.2 ? N3 CTP 901 B 1 
HETATM 4 C C4 CTP . . . F 4 12.991 -26.207 -25.108 1 41.72 ? C4 CTP 901 B 1 
HETATM 5 C C5 CTP . . . F 4 12.565 -26.078 -23.794 1 41.15 ? C5 CTP 901 B 1 
HETATM 6 C C6 CTP . . . F 4 11.363 -26.685 -23.408 1 41.57 ? C6 CTP 901 B 1 
HETATM 7 O O2 CTP . . . F 4 10.176 -27.801 -26.495 1 42.8 ? O2 CTP 901 B 1 
HETATM 8 N N4 CTP . . . F 4 14.199 -25.774 -25.464 1 42.46 ? N4 CTP 901 B 1 
HETATM 9 C C1' CTP . . . F 4 9.097 -27.592 -23.954 1 40.91 ? C1' CTP 901 B 1 
HETATM 10 C C2' CTP . . . F 4 9.056 -29.037 -23.462 1 39.88 ? C2' CTP 901 B 1 
HETATM 11 O O2' CTP . . . F 4 7.898 -29.687 -23.939 1 40.35 ? O2' CTP 901 B 1 
HETATM 12 C C3' CTP . . . F 4 9.034 -28.9 -21.957 1 40.95 ? C3' CTP 901 B 1 
HETATM 13 C C4' CTP . . . F 4 8.179 -27.649 -21.84 1 42.87 ? C4' CTP 901 B 1 
HETATM 14 O O4' CTP . . . F 4 8.583 -26.797 -22.899 1 40.79 ? O4' CTP 901 B 1 
HETATM 15 O O3' CTP . . . F 4 8.576 -30.037 -21.227 1 38.95 ? O3' CTP 901 B 1 
HETATM 16 C C5' CTP . . . F 4 8.359 -26.983 -20.493 1 45.34 ? C5' CTP 901 B 1 
HETATM 17 O O5' CTP . . . F 4 9.717 -26.636 -20.303 1 48.57 ? O5' CTP 901 B 1 
HETATM 18 P PA CTP . . . F 4 10.137 -26.153 -18.831 1 51.45 ? PA CTP 901 B 1 
HETATM 19 O O1A CTP . . . F 4 9.675 -24.728 -18.646 1 52.83 ? O1A CTP 901 B 1 
HETATM 20 O O2A CTP . . . F 4 11.632 -26.276 -18.653 1 52.43 ? O2A CTP 901 B 1 
HETATM 21 O O3A CTP . . . F 4 9.305 -27.153 -17.837 1 55.72 ? O3A CTP 901 B 1 
HETATM 22 P PB CTP . . . F 4 9.006 -26.872 -16.262 1 58.95 ? PB CTP 901 B 1 
HETATM 23 O O1B CTP . . . F 4 9.964 -25.834 -15.758 1 58.11 ? O1B CTP 901 B 1 
HETATM 24 O O2B CTP . . . F 4 9.078 -28.149 -15.447 1 57.96 ? O2B CTP 901 B 1 
HETATM 25 O O3B CTP . . . F 4 7.503 -26.287 -16.191 1 61.01 ? O3B CTP 901 B 1 
HETATM 26 P PG CTP . . . F 4 6.863 -25.614 -14.861 1 63.71 ? PG CTP 901 B 1 
HETATM 27 O O1G CTP . . . F 4 7.146 -26.484 -13.664 1 64.57 ? O1G CTP 901 B 1 
HETATM 28 O O2G CTP . . . F 4 5.363 -25.491 -15.017 1 63.9 ? O2G CTP 901 B 1 
HETATM 29 O O3G CTP . . . F 4 7.44 -24.228 -14.632 1 64.29 ? O3G CTP 901 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           29 
#