data_3IF9 # _model_server_result.job_id eh0oX3LriBO2G4mpCDYWNA _model_server_result.datetime_utc '2024-11-28 02:39:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3if9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":370}' # _entry.id 3IF9 # _exptl.entry_id 3IF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.051 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLYCOLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IF9 _cell.length_a 72.344 _cell.length_b 215.058 _cell.length_c 217.083 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1,2 C,D,I,J,K,L,O,P 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_577 x,-y+2,-z+2 1 0 0 0 -1 0 0 0 -1 0 430.116 434.166 3 'crystal symmetry operation' 3_556 -x,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 325.6245 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C2 H4 O3' _chem_comp.formula_weight 76.051 _chem_comp.id GOA _chem_comp.mon_nstd_flag . _chem_comp.name 'GLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYDROXYACETIC ACID;HYDROXYETHANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C CA GOA sing 220 n n C O GOA doub 221 n n C OXT GOA sing 222 n n CA O2 GOA sing 223 n n CA H22 GOA sing 224 n n CA H21 GOA sing 225 n n OXT HXT GOA sing 226 n n O2 H20 GOA sing 227 n n # _atom_sites.entry_id 3IF9 _atom_sites.fract_transf_matrix[1][1] 0.013823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOA A 1 370 1 GOA GOA . F 3 FAD A 1 371 2 FAD FAD . G 2 GOA B 1 370 2 GOA GOA . H 3 FAD B 1 371 3 FAD FAD . I 2 GOA C 1 370 3 GOA GOA . J 3 FAD C 1 371 4 FAD FAD . K 2 GOA D 1 370 4 GOA GOA . L 3 FAD D 1 371 1 FAD FAD . M 4 HOH A 1 372 2 HOH HOH . M 4 HOH A 2 373 8 HOH HOH . M 4 HOH A 3 374 12 HOH HOH . M 4 HOH A 4 375 13 HOH HOH . M 4 HOH A 5 376 16 HOH HOH . M 4 HOH A 6 377 24 HOH HOH . M 4 HOH A 7 378 28 HOH HOH . M 4 HOH A 8 379 32 HOH HOH . M 4 HOH A 9 380 35 HOH HOH . M 4 HOH A 10 381 44 HOH HOH . M 4 HOH A 11 382 47 HOH HOH . M 4 HOH A 12 383 51 HOH HOH . M 4 HOH A 13 384 54 HOH HOH . M 4 HOH A 14 385 56 HOH HOH . M 4 HOH A 15 386 57 HOH HOH . M 4 HOH A 16 387 68 HOH HOH . M 4 HOH A 17 388 69 HOH HOH . M 4 HOH A 18 389 70 HOH HOH . M 4 HOH A 19 390 73 HOH HOH . M 4 HOH A 20 391 74 HOH HOH . M 4 HOH A 21 392 77 HOH HOH . M 4 HOH A 22 393 78 HOH HOH . M 4 HOH A 23 394 79 HOH HOH . M 4 HOH A 24 395 84 HOH HOH . M 4 HOH A 25 396 85 HOH HOH . M 4 HOH A 26 397 91 HOH HOH . M 4 HOH A 27 398 95 HOH HOH . M 4 HOH A 28 399 98 HOH HOH . M 4 HOH A 29 400 107 HOH HOH . M 4 HOH A 30 401 111 HOH HOH . M 4 HOH A 31 402 113 HOH HOH . M 4 HOH A 32 403 114 HOH HOH . M 4 HOH A 33 404 121 HOH HOH . M 4 HOH A 34 405 124 HOH HOH . M 4 HOH A 35 406 129 HOH HOH . M 4 HOH A 36 407 140 HOH HOH . M 4 HOH A 37 408 156 HOH HOH . M 4 HOH A 38 409 157 HOH HOH . M 4 HOH A 39 410 158 HOH HOH . M 4 HOH A 40 411 161 HOH HOH . M 4 HOH A 41 417 160 HOH HOH . N 4 HOH B 1 372 3 HOH HOH . N 4 HOH B 2 373 5 HOH HOH . N 4 HOH B 3 374 15 HOH HOH . N 4 HOH B 4 375 17 HOH HOH . N 4 HOH B 5 376 20 HOH HOH . N 4 HOH B 6 377 21 HOH HOH . N 4 HOH B 7 378 25 HOH HOH . N 4 HOH B 8 379 26 HOH HOH . N 4 HOH B 9 380 29 HOH HOH . N 4 HOH B 10 381 31 HOH HOH . N 4 HOH B 11 382 37 HOH HOH . N 4 HOH B 12 383 43 HOH HOH . N 4 HOH B 13 384 45 HOH HOH . N 4 HOH B 14 385 52 HOH HOH . N 4 HOH B 15 386 63 HOH HOH . N 4 HOH B 16 387 65 HOH HOH . N 4 HOH B 17 388 71 HOH HOH . N 4 HOH B 18 389 80 HOH HOH . N 4 HOH B 19 390 81 HOH HOH . N 4 HOH B 20 391 83 HOH HOH . N 4 HOH B 21 392 88 HOH HOH . N 4 HOH B 22 393 90 HOH HOH . N 4 HOH B 23 394 96 HOH HOH . N 4 HOH B 24 395 100 HOH HOH . N 4 HOH B 25 396 103 HOH HOH . N 4 HOH B 26 397 104 HOH HOH . N 4 HOH B 27 398 109 HOH HOH . N 4 HOH B 28 399 115 HOH HOH . N 4 HOH B 29 400 116 HOH HOH . N 4 HOH B 30 401 118 HOH HOH . N 4 HOH B 31 402 119 HOH HOH . N 4 HOH B 32 403 122 HOH HOH . N 4 HOH B 33 404 123 HOH HOH . N 4 HOH B 34 405 127 HOH HOH . N 4 HOH B 35 406 130 HOH HOH . N 4 HOH B 36 407 135 HOH HOH . N 4 HOH B 37 408 137 HOH HOH . N 4 HOH B 38 409 142 HOH HOH . N 4 HOH B 39 410 144 HOH HOH . N 4 HOH B 40 411 145 HOH HOH . N 4 HOH B 41 412 151 HOH HOH . N 4 HOH B 42 413 152 HOH HOH . N 4 HOH B 43 414 154 HOH HOH . N 4 HOH B 44 415 155 HOH HOH . N 4 HOH B 45 416 159 HOH HOH . N 4 HOH B 46 418 165 HOH HOH . O 4 HOH C 1 372 1 HOH HOH . O 4 HOH C 2 373 4 HOH HOH . O 4 HOH C 3 374 6 HOH HOH . O 4 HOH C 4 375 7 HOH HOH . O 4 HOH C 5 376 9 HOH HOH . O 4 HOH C 6 377 10 HOH HOH . O 4 HOH C 7 378 11 HOH HOH . O 4 HOH C 8 379 14 HOH HOH . O 4 HOH C 9 380 19 HOH HOH . O 4 HOH C 10 381 27 HOH HOH . O 4 HOH C 11 382 33 HOH HOH . O 4 HOH C 12 383 34 HOH HOH . O 4 HOH C 13 384 36 HOH HOH . O 4 HOH C 14 385 39 HOH HOH . O 4 HOH C 15 386 40 HOH HOH . O 4 HOH C 16 387 41 HOH HOH . O 4 HOH C 17 388 42 HOH HOH . O 4 HOH C 18 389 46 HOH HOH . O 4 HOH C 19 390 48 HOH HOH . O 4 HOH C 20 391 49 HOH HOH . O 4 HOH C 21 392 50 HOH HOH . O 4 HOH C 22 393 53 HOH HOH . O 4 HOH C 23 394 58 HOH HOH . O 4 HOH C 24 395 61 HOH HOH . O 4 HOH C 25 396 62 HOH HOH . O 4 HOH C 26 397 64 HOH HOH . O 4 HOH C 27 398 72 HOH HOH . O 4 HOH C 28 399 75 HOH HOH . O 4 HOH C 29 400 76 HOH HOH . O 4 HOH C 30 401 89 HOH HOH . O 4 HOH C 31 402 94 HOH HOH . O 4 HOH C 32 403 99 HOH HOH . O 4 HOH C 33 404 101 HOH HOH . O 4 HOH C 34 405 106 HOH HOH . O 4 HOH C 35 406 117 HOH HOH . O 4 HOH C 36 407 125 HOH HOH . O 4 HOH C 37 408 128 HOH HOH . O 4 HOH C 38 409 131 HOH HOH . O 4 HOH C 39 410 133 HOH HOH . O 4 HOH C 40 411 134 HOH HOH . O 4 HOH C 41 412 136 HOH HOH . O 4 HOH C 42 413 147 HOH HOH . O 4 HOH C 43 414 150 HOH HOH . O 4 HOH C 44 415 153 HOH HOH . O 4 HOH C 45 416 162 HOH HOH . O 4 HOH C 46 417 164 HOH HOH . O 4 HOH C 47 418 166 HOH HOH . P 4 HOH D 1 372 18 HOH HOH . P 4 HOH D 2 373 22 HOH HOH . P 4 HOH D 3 374 23 HOH HOH . P 4 HOH D 4 375 30 HOH HOH . P 4 HOH D 5 376 38 HOH HOH . P 4 HOH D 6 377 59 HOH HOH . P 4 HOH D 7 378 86 HOH HOH . P 4 HOH D 8 379 87 HOH HOH . P 4 HOH D 9 380 92 HOH HOH . P 4 HOH D 10 381 97 HOH HOH . P 4 HOH D 11 382 102 HOH HOH . P 4 HOH D 12 383 105 HOH HOH . P 4 HOH D 13 384 108 HOH HOH . P 4 HOH D 14 385 110 HOH HOH . P 4 HOH D 15 386 112 HOH HOH . P 4 HOH D 16 387 126 HOH HOH . P 4 HOH D 17 388 132 HOH HOH . P 4 HOH D 18 389 141 HOH HOH . P 4 HOH D 19 390 143 HOH HOH . P 4 HOH D 20 391 146 HOH HOH . P 4 HOH D 21 392 148 HOH HOH . P 4 HOH D 22 393 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C GOA . . . K 2 -12.348 151.936 145.483 1 52.14 ? C GOA 370 D 1 HETATM 2 C CA GOA . . . K 2 -12.482 150.777 146.132 1 52.23 ? CA GOA 370 D 1 HETATM 3 O O GOA . . . K 2 -11.245 152.253 145.001 1 51.3 ? O GOA 370 D 1 HETATM 4 O OXT GOA . . . K 2 -13.349 152.672 145.371 1 53.31 ? OXT GOA 370 D 1 HETATM 5 O O2 GOA . . . K 2 -13.676 150.47 146.638 1 52.97 ? O2 GOA 370 D 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #