data_3IFW # _model_server_result.job_id A5CckCWu2u6tT5Wm6hZ20w _model_server_result.datetime_utc '2025-02-24 20:12:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ifw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":76}' # _entry.id 3IFW # _exptl.entry_id 3IFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'METHYL 4-AMINOBUTANOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IFW _cell.length_a 87.304 _cell.length_b 87.304 _cell.length_c 193.544 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 75 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 75 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GVE _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GVE _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.333 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id GVE _chem_comp.mon_nstd_flag . _chem_comp.name 'METHYL 4-AMINOBUTANOATE' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 GVE sing 129 n n N H GVE sing 130 n n N H2 GVE sing 131 n n C1 CB GVE sing 132 n n C1 HA1 GVE sing 133 n n C1 HA2 GVE sing 134 n n CB CG GVE sing 135 n n CB HB1 GVE sing 136 n n CB HB2 GVE sing 137 n n CG C GVE sing 138 n n CG HG1 GVE sing 139 n n CG HG2 GVE sing 140 n n C OXT GVE sing 141 n n C O GVE doub 142 n n OXT CH3 GVE sing 143 n n CH3 HH31 GVE sing 144 n n CH3 HH32 GVE sing 145 n n CH3 HH33 GVE sing 146 n n # _atom_sites.entry_id 3IFW _atom_sites.fract_transf_matrix[1][1] 0.011454 _atom_sites.fract_transf_matrix[1][2] 0.006613 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GVE B 1 76 76 GVE GVE . D 4 HOH A 1 224 224 HOH HOH . D 4 HOH A 2 225 225 HOH HOH . D 4 HOH A 3 226 226 HOH HOH . D 4 HOH A 4 227 227 HOH HOH . D 4 HOH A 5 228 228 HOH HOH . D 4 HOH A 6 229 229 HOH HOH . D 4 HOH A 7 230 230 HOH HOH . D 4 HOH A 8 231 231 HOH HOH . D 4 HOH A 9 232 232 HOH HOH . D 4 HOH A 10 233 233 HOH HOH . D 4 HOH A 11 234 234 HOH HOH . D 4 HOH A 12 235 235 HOH HOH . D 4 HOH A 13 236 236 HOH HOH . D 4 HOH A 14 237 237 HOH HOH . D 4 HOH A 15 238 238 HOH HOH . D 4 HOH A 16 239 239 HOH HOH . D 4 HOH A 17 240 240 HOH HOH . D 4 HOH A 18 241 241 HOH HOH . D 4 HOH A 19 242 242 HOH HOH . D 4 HOH A 20 243 243 HOH HOH . D 4 HOH A 21 244 244 HOH HOH . D 4 HOH A 22 245 245 HOH HOH . D 4 HOH A 23 246 246 HOH HOH . D 4 HOH A 24 247 247 HOH HOH . D 4 HOH A 25 248 248 HOH HOH . D 4 HOH A 26 249 249 HOH HOH . D 4 HOH A 27 250 250 HOH HOH . D 4 HOH A 28 251 251 HOH HOH . D 4 HOH A 29 252 252 HOH HOH . D 4 HOH A 30 253 253 HOH HOH . D 4 HOH A 31 254 254 HOH HOH . D 4 HOH A 32 255 255 HOH HOH . D 4 HOH A 33 256 256 HOH HOH . D 4 HOH A 34 257 257 HOH HOH . D 4 HOH A 35 258 258 HOH HOH . D 4 HOH A 36 259 259 HOH HOH . E 4 HOH B 1 78 78 HOH HOH . E 4 HOH B 2 79 79 HOH HOH . E 4 HOH B 3 80 80 HOH HOH . E 4 HOH B 4 81 81 HOH HOH . E 4 HOH B 5 82 82 HOH HOH . E 4 HOH B 6 83 83 HOH HOH . E 4 HOH B 7 84 84 HOH HOH . E 4 HOH B 8 85 85 HOH HOH . E 4 HOH B 9 86 86 HOH HOH . E 4 HOH B 10 87 87 HOH HOH . E 4 HOH B 11 88 88 HOH HOH . E 4 HOH B 12 89 89 HOH HOH . E 4 HOH B 13 90 90 HOH HOH . E 4 HOH B 14 91 91 HOH HOH . E 4 HOH B 15 92 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GVE . . . C 3 -6.15 -18.948 -8.304 1 49.56 ? N GVE 76 B 1 HETATM 2 C C1 GVE . . . C 3 -4.788 -18.637 -7.912 1 52.48 ? C1 GVE 76 B 1 HETATM 3 C CB GVE . . . C 3 -4.073 -19.919 -7.502 1 53.09 ? CB GVE 76 B 1 HETATM 4 C CG GVE . . . C 3 -2.846 -19.658 -6.632 1 57.31 ? CG GVE 76 B 1 HETATM 5 C C GVE . . . C 3 -3.175 -19.119 -5.259 1 59.21 ? C GVE 76 B 1 HETATM 6 O OXT GVE . . . C 3 -4.049 -19.846 -4.356 1 60.8 ? OXT GVE 76 B 1 HETATM 7 O O GVE . . . C 3 -2.691 -18.061 -4.888 1 60.93 ? O GVE 76 B 1 HETATM 8 C CH3 GVE . . . C 3 -5.435 -19.507 -4.245 1 61.43 ? CH3 GVE 76 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #