data_3IFX # _model_server_result.job_id DdKyIA7a3Bj5abuww3L0yw _model_server_result.datetime_utc '2024-11-05 23:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ifx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":248}' # _entry.id 3IFX # loop_ _exptl.entry_id _exptl.method 3IFX 'X-RAY DIFFRACTION' 3IFX EPR # _entity.details ? _entity.formula_weight 264.385 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.83 _cell.angle_gamma 90 _cell.entry_id 3IFX _cell.length_a 130.97 _cell.length_b 76.63 _cell.length_c 112.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 64.839365 0 91.591266 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 48 A CYS 48 1_555 F S1 MTN . A MTN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale2 B SG CYS 48 B CYS 48 1_555 I S1 MTN . B MTN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale3 C SG CYS 48 C CYS 48 1_555 J S1 MTN . C MTN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale4 D SG CYS 48 D CYS 48 1_555 K S1 MTN . D MTN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc1 A O THR 75 A THR 75 1_555 E K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc2 A OG1 THR 75 A THR 75 1_555 E K K . A K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.45 ? metalc ? metalc3 A O THR 75 A THR 75 1_555 G K K . B K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc4 A O VAL 76 A VAL 76 1_555 G K K . B K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc5 E K K . A K 202 1_555 B O THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc6 E K K . A K 202 1_555 B OG1 THR 75 B THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc7 E K K . A K 202 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc8 E K K . A K 202 1_555 C OG1 THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.368 ? metalc ? metalc9 E K K . A K 202 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc10 E K K . A K 202 1_555 D OG1 THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc11 B O THR 75 B THR 75 1_555 G K K . B K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc12 B O VAL 76 B VAL 76 1_555 G K K . B K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc13 G K K . B K 201 1_555 C O THR 75 C THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc14 G K K . B K 201 1_555 C O VAL 76 C VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc15 G K K . B K 201 1_555 D O THR 75 D THR 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc16 G K K . B K 201 1_555 D O VAL 76 D VAL 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 MTN sing 221 n n N1 C1 MTN sing 222 n n N1 C5 MTN sing 223 n n C1 C2 MTN sing 224 n n C1 C8 MTN sing 225 n n C1 C9 MTN sing 226 n n C2 C3 MTN doub 227 n n C2 H2 MTN sing 228 n n C3 C4 MTN sing 229 n n C3 C5 MTN sing 230 n n C4 S1 MTN sing 231 n n C4 H41 MTN sing 232 n n C4 H42 MTN sing 233 n n C5 C6 MTN sing 234 n n C5 C7 MTN sing 235 n n C6 H61 MTN sing 236 n n C6 H62 MTN sing 237 n n C6 H63 MTN sing 238 n n C7 H71 MTN sing 239 n n C7 H72 MTN sing 240 n n C7 H73 MTN sing 241 n n C8 H81 MTN sing 242 n n C8 H82 MTN sing 243 n n C8 H83 MTN sing 244 n n C9 H91 MTN sing 245 n n C9 H92 MTN sing 246 n n C9 H93 MTN sing 247 n n S1 S2 MTN sing 248 n n S2 O2 MTN doub 249 n n S2 O3 MTN doub 250 n n S2 C12 MTN sing 251 n n C12 H4 MTN sing 252 n n C12 H1 MTN sing 253 n n C12 H3 MTN sing 254 n n # _atom_sites.entry_id 3IFX _atom_sites.fract_transf_matrix[1][1] 0.007635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005513 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 K A 1 202 202 K K . F 3 MTN A 1 248 248 MTN MTN . G 2 K B 1 201 201 K K . H 4 TBA B 1 203 203 TBA TBA . I 3 MTN B 1 248 248 MTN MTN . J 3 MTN C 1 248 248 MTN MTN . K 3 MTN D 1 248 248 MTN MTN . L 5 HOH B 1 205 205 HOH HOH . L 5 HOH B 2 206 206 HOH HOH . M 5 HOH D 1 204 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . . . I 3 54.312 28.225 29.237 0.5 103.1 ? O1 MTN 248 B 1 HETATM 2 N N1 MTN . . . I 3 54.196 29.426 29.416 0.5 94.88 ? N1 MTN 248 B 1 HETATM 3 C C1 MTN . . . I 3 55.298 30.366 29.433 0.5 105.64 ? C1 MTN 248 B 1 HETATM 4 C C2 MTN . . . I 3 54.614 31.684 29.734 0.5 57.33 ? C2 MTN 248 B 1 HETATM 5 C C3 MTN . . . I 3 53.291 31.491 29.794 0.5 59.61 ? C3 MTN 248 B 1 HETATM 6 C C4 MTN . . . I 3 52.278 32.6 29.882 0.5 62.5 ? C4 MTN 248 B 1 HETATM 7 S S1 MTN . . . I 3 50.792 31.996 29.178 0.5 102.2 ? S1 MTN 248 B 1 HETATM 8 C C5 MTN . . . I 3 52.912 30.034 29.663 0.5 81.43 ? C5 MTN 248 B 1 HETATM 9 C C6 MTN . . . I 3 51.975 29.894 28.462 0.5 117.01 ? C6 MTN 248 B 1 HETATM 10 C C7 MTN . . . I 3 52.276 29.415 30.909 0.5 58.51 ? C7 MTN 248 B 1 HETATM 11 C C8 MTN . . . I 3 56.263 29.993 30.552 0.5 127.72 ? C8 MTN 248 B 1 HETATM 12 C C9 MTN . . . I 3 55.974 30.399 28.073 0.5 126.89 ? C9 MTN 248 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #