data_3IFZ
#
_model_server_result.job_id            EEi1VmxzJ8ioprD9vRLq4Q 
_model_server_result.datetime_utc      '2024-10-19 15:40:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ifz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":509}' 
#
_entry.id    3IFZ 
#
_exptl.entry_id    3IFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          120.4 
_cell.angle_gamma         90 
_cell.entry_id            3IFZ 
_cell.length_a            163.915 
_cell.length_b            109.66 
_cell.length_c            101.996 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 224 n n 
C1 H11 MPD sing 225 n n 
C1 H12 MPD sing 226 n n 
C1 H13 MPD sing 227 n n 
C2 O2 MPD sing 228 n n 
C2 CM MPD sing 229 n n 
C2 C3 MPD sing 230 n n 
O2 HO2 MPD sing 231 n n 
CM HM1 MPD sing 232 n n 
CM HM2 MPD sing 233 n n 
CM HM3 MPD sing 234 n n 
C3 C4 MPD sing 235 n n 
C3 H31 MPD sing 236 n n 
C3 H32 MPD sing 237 n n 
C4 O4 MPD sing 238 n n 
C4 C5 MPD sing 239 n n 
C4 H4 MPD sing 240 n n 
O4 HO4 MPD sing 241 n n 
C5 H51 MPD sing 242 n n 
C5 H52 MPD sing 243 n n 
C5 H53 MPD sing 244 n n 
#
_atom_sites.entry_id                     3IFZ 
_atom_sites.fract_transf_matrix[1][1]    0.006101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003579 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011367 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 509 502 MPD MPD . 
D 3 NA A 1 510 503 NA NA . 
E 2 MPD B 1 509 502 MPD MPD . 
F 3 NA B 1 510 503 NA NA . 
G 4 HOH A 1 511 511 HOH HOH . 
G 4 HOH A 2 512 512 HOH HOH . 
G 4 HOH A 3 513 513 HOH HOH . 
G 4 HOH A 4 514 514 HOH HOH . 
G 4 HOH A 5 515 515 HOH HOH . 
G 4 HOH A 6 516 516 HOH HOH . 
G 4 HOH A 7 517 517 HOH HOH . 
G 4 HOH A 8 518 518 HOH HOH . 
G 4 HOH A 9 519 519 HOH HOH . 
G 4 HOH A 10 520 520 HOH HOH . 
G 4 HOH A 11 521 521 HOH HOH . 
G 4 HOH A 12 522 522 HOH HOH . 
G 4 HOH A 13 523 523 HOH HOH . 
G 4 HOH A 14 524 524 HOH HOH . 
G 4 HOH A 15 525 525 HOH HOH . 
G 4 HOH A 16 526 526 HOH HOH . 
G 4 HOH A 17 527 527 HOH HOH . 
G 4 HOH A 18 528 528 HOH HOH . 
G 4 HOH A 19 529 529 HOH HOH . 
G 4 HOH A 20 530 530 HOH HOH . 
G 4 HOH A 21 531 531 HOH HOH . 
G 4 HOH A 22 532 532 HOH HOH . 
G 4 HOH A 23 533 533 HOH HOH . 
G 4 HOH A 24 534 534 HOH HOH . 
G 4 HOH A 25 535 535 HOH HOH . 
G 4 HOH A 26 536 536 HOH HOH . 
G 4 HOH A 27 537 537 HOH HOH . 
G 4 HOH A 28 538 538 HOH HOH . 
G 4 HOH A 29 539 539 HOH HOH . 
G 4 HOH A 30 540 540 HOH HOH . 
G 4 HOH A 31 541 541 HOH HOH . 
G 4 HOH A 32 542 542 HOH HOH . 
G 4 HOH A 33 543 543 HOH HOH . 
G 4 HOH A 34 544 544 HOH HOH . 
G 4 HOH A 35 545 545 HOH HOH . 
G 4 HOH A 36 546 546 HOH HOH . 
G 4 HOH A 37 547 547 HOH HOH . 
G 4 HOH A 38 548 548 HOH HOH . 
G 4 HOH A 39 549 549 HOH HOH . 
G 4 HOH A 40 550 550 HOH HOH . 
G 4 HOH A 41 551 551 HOH HOH . 
G 4 HOH A 42 552 552 HOH HOH . 
G 4 HOH A 43 553 553 HOH HOH . 
G 4 HOH A 44 554 554 HOH HOH . 
G 4 HOH A 45 555 555 HOH HOH . 
G 4 HOH A 46 556 556 HOH HOH . 
G 4 HOH A 47 557 557 HOH HOH . 
G 4 HOH A 48 558 558 HOH HOH . 
G 4 HOH A 49 559 559 HOH HOH . 
G 4 HOH A 50 560 560 HOH HOH . 
G 4 HOH A 51 561 561 HOH HOH . 
G 4 HOH A 52 562 562 HOH HOH . 
G 4 HOH A 53 563 563 HOH HOH . 
G 4 HOH A 54 564 564 HOH HOH . 
G 4 HOH A 55 565 565 HOH HOH . 
G 4 HOH A 56 566 566 HOH HOH . 
G 4 HOH A 57 567 567 HOH HOH . 
G 4 HOH A 58 568 568 HOH HOH . 
G 4 HOH A 59 569 569 HOH HOH . 
G 4 HOH A 60 570 570 HOH HOH . 
G 4 HOH A 61 571 571 HOH HOH . 
G 4 HOH A 62 572 572 HOH HOH . 
G 4 HOH A 63 573 573 HOH HOH . 
G 4 HOH A 64 574 574 HOH HOH . 
G 4 HOH A 65 575 575 HOH HOH . 
G 4 HOH A 66 576 576 HOH HOH . 
G 4 HOH A 67 577 577 HOH HOH . 
G 4 HOH A 68 578 578 HOH HOH . 
G 4 HOH A 69 579 579 HOH HOH . 
G 4 HOH A 70 580 580 HOH HOH . 
G 4 HOH A 71 581 581 HOH HOH . 
G 4 HOH A 72 582 582 HOH HOH . 
G 4 HOH A 73 583 583 HOH HOH . 
G 4 HOH A 74 584 584 HOH HOH . 
G 4 HOH A 75 585 585 HOH HOH . 
G 4 HOH A 76 586 586 HOH HOH . 
G 4 HOH A 77 587 587 HOH HOH . 
G 4 HOH A 78 588 588 HOH HOH . 
G 4 HOH A 79 589 589 HOH HOH . 
G 4 HOH A 80 590 590 HOH HOH . 
G 4 HOH A 81 591 591 HOH HOH . 
G 4 HOH A 82 592 592 HOH HOH . 
G 4 HOH A 83 593 593 HOH HOH . 
G 4 HOH A 84 594 594 HOH HOH . 
G 4 HOH A 85 595 595 HOH HOH . 
G 4 HOH A 86 596 596 HOH HOH . 
G 4 HOH A 87 597 597 HOH HOH . 
G 4 HOH A 88 598 598 HOH HOH . 
G 4 HOH A 89 599 599 HOH HOH . 
G 4 HOH A 90 600 600 HOH HOH . 
G 4 HOH A 91 601 601 HOH HOH . 
G 4 HOH A 92 602 602 HOH HOH . 
G 4 HOH A 93 603 504 HOH HOH . 
G 4 HOH A 94 604 604 HOH HOH . 
G 4 HOH A 95 605 605 HOH HOH . 
G 4 HOH A 96 606 606 HOH HOH . 
G 4 HOH A 97 607 607 HOH HOH . 
G 4 HOH A 98 608 608 HOH HOH . 
G 4 HOH A 99 609 505 HOH HOH . 
G 4 HOH A 100 610 506 HOH HOH . 
G 4 HOH A 101 611 507 HOH HOH . 
G 4 HOH A 102 612 508 HOH HOH . 
G 4 HOH A 103 613 509 HOH HOH . 
G 4 HOH A 104 614 510 HOH HOH . 
H 4 HOH B 1 511 511 HOH HOH . 
H 4 HOH B 2 512 512 HOH HOH . 
H 4 HOH B 3 513 513 HOH HOH . 
H 4 HOH B 4 514 514 HOH HOH . 
H 4 HOH B 5 515 515 HOH HOH . 
H 4 HOH B 6 516 516 HOH HOH . 
H 4 HOH B 7 517 517 HOH HOH . 
H 4 HOH B 8 518 518 HOH HOH . 
H 4 HOH B 9 519 519 HOH HOH . 
H 4 HOH B 10 520 520 HOH HOH . 
H 4 HOH B 11 521 521 HOH HOH . 
H 4 HOH B 12 522 522 HOH HOH . 
H 4 HOH B 13 523 523 HOH HOH . 
H 4 HOH B 14 524 524 HOH HOH . 
H 4 HOH B 15 525 525 HOH HOH . 
H 4 HOH B 16 526 526 HOH HOH . 
H 4 HOH B 17 527 527 HOH HOH . 
H 4 HOH B 18 528 528 HOH HOH . 
H 4 HOH B 19 529 529 HOH HOH . 
H 4 HOH B 20 530 530 HOH HOH . 
H 4 HOH B 21 531 531 HOH HOH . 
H 4 HOH B 22 532 532 HOH HOH . 
H 4 HOH B 23 533 533 HOH HOH . 
H 4 HOH B 24 534 534 HOH HOH . 
H 4 HOH B 25 535 535 HOH HOH . 
H 4 HOH B 26 536 536 HOH HOH . 
H 4 HOH B 27 537 537 HOH HOH . 
H 4 HOH B 28 538 538 HOH HOH . 
H 4 HOH B 29 539 539 HOH HOH . 
H 4 HOH B 30 540 540 HOH HOH . 
H 4 HOH B 31 541 541 HOH HOH . 
H 4 HOH B 32 542 542 HOH HOH . 
H 4 HOH B 33 543 543 HOH HOH . 
H 4 HOH B 34 544 544 HOH HOH . 
H 4 HOH B 35 545 545 HOH HOH . 
H 4 HOH B 36 546 546 HOH HOH . 
H 4 HOH B 37 547 547 HOH HOH . 
H 4 HOH B 38 548 548 HOH HOH . 
H 4 HOH B 39 549 549 HOH HOH . 
H 4 HOH B 40 550 550 HOH HOH . 
H 4 HOH B 41 551 551 HOH HOH . 
H 4 HOH B 42 552 552 HOH HOH . 
H 4 HOH B 43 553 553 HOH HOH . 
H 4 HOH B 44 554 554 HOH HOH . 
H 4 HOH B 45 555 555 HOH HOH . 
H 4 HOH B 46 556 556 HOH HOH . 
H 4 HOH B 47 557 557 HOH HOH . 
H 4 HOH B 48 558 558 HOH HOH . 
H 4 HOH B 49 559 559 HOH HOH . 
H 4 HOH B 50 560 560 HOH HOH . 
H 4 HOH B 51 561 561 HOH HOH . 
H 4 HOH B 52 562 562 HOH HOH . 
H 4 HOH B 53 563 563 HOH HOH . 
H 4 HOH B 54 564 564 HOH HOH . 
H 4 HOH B 55 565 565 HOH HOH . 
H 4 HOH B 56 566 566 HOH HOH . 
H 4 HOH B 57 567 567 HOH HOH . 
H 4 HOH B 58 568 568 HOH HOH . 
H 4 HOH B 59 569 569 HOH HOH . 
H 4 HOH B 60 570 570 HOH HOH . 
H 4 HOH B 61 571 571 HOH HOH . 
H 4 HOH B 62 572 572 HOH HOH . 
H 4 HOH B 63 573 573 HOH HOH . 
H 4 HOH B 64 574 574 HOH HOH . 
H 4 HOH B 65 575 575 HOH HOH . 
H 4 HOH B 66 576 576 HOH HOH . 
H 4 HOH B 67 577 577 HOH HOH . 
H 4 HOH B 68 578 578 HOH HOH . 
H 4 HOH B 69 579 579 HOH HOH . 
H 4 HOH B 70 580 504 HOH HOH . 
H 4 HOH B 71 581 581 HOH HOH . 
H 4 HOH B 72 582 582 HOH HOH . 
H 4 HOH B 73 583 583 HOH HOH . 
H 4 HOH B 74 584 584 HOH HOH . 
H 4 HOH B 75 585 585 HOH HOH . 
H 4 HOH B 76 586 586 HOH HOH . 
H 4 HOH B 77 587 587 HOH HOH . 
H 4 HOH B 78 588 588 HOH HOH . 
H 4 HOH B 79 589 589 HOH HOH . 
H 4 HOH B 80 590 590 HOH HOH . 
H 4 HOH B 81 591 591 HOH HOH . 
H 4 HOH B 82 592 592 HOH HOH . 
H 4 HOH B 83 593 593 HOH HOH . 
H 4 HOH B 84 594 594 HOH HOH . 
H 4 HOH B 85 595 595 HOH HOH . 
H 4 HOH B 86 596 596 HOH HOH . 
H 4 HOH B 87 597 597 HOH HOH . 
H 4 HOH B 88 598 598 HOH HOH . 
H 4 HOH B 89 599 599 HOH HOH . 
H 4 HOH B 90 600 600 HOH HOH . 
H 4 HOH B 91 601 601 HOH HOH . 
H 4 HOH B 92 602 602 HOH HOH . 
H 4 HOH B 93 603 603 HOH HOH . 
H 4 HOH B 94 604 604 HOH HOH . 
H 4 HOH B 95 605 605 HOH HOH . 
H 4 HOH B 96 606 606 HOH HOH . 
H 4 HOH B 97 607 607 HOH HOH . 
H 4 HOH B 98 608 608 HOH HOH . 
H 4 HOH B 99 609 609 HOH HOH . 
H 4 HOH B 100 610 610 HOH HOH . 
H 4 HOH B 101 611 611 HOH HOH . 
H 4 HOH B 102 612 612 HOH HOH . 
H 4 HOH B 103 613 613 HOH HOH . 
H 4 HOH B 104 614 614 HOH HOH . 
H 4 HOH B 105 615 615 HOH HOH . 
H 4 HOH B 106 616 616 HOH HOH . 
H 4 HOH B 107 617 617 HOH HOH . 
H 4 HOH B 108 618 618 HOH HOH . 
H 4 HOH B 109 619 619 HOH HOH . 
H 4 HOH B 110 620 620 HOH HOH . 
H 4 HOH B 111 621 621 HOH HOH . 
H 4 HOH B 112 622 622 HOH HOH . 
H 4 HOH B 113 623 505 HOH HOH . 
H 4 HOH B 114 624 506 HOH HOH . 
H 4 HOH B 115 625 507 HOH HOH . 
H 4 HOH B 116 626 508 HOH HOH . 
H 4 HOH B 117 627 509 HOH HOH . 
H 4 HOH B 118 628 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 2 4.468 1.989 23.569 1 99.47 ? C1 MPD 509 A 1 
HETATM 2 C C2 MPD . . . C 2 5.545 1.673 22.55 1 96.09 ? C2 MPD 509 A 1 
HETATM 3 O O2 MPD . . . C 2 6.85 1.56 23.15 1 99.47 ? O2 MPD 509 A 1 
HETATM 4 C CM MPD . . . C 2 5.18 0.37 21.857 1 98.77 ? CM MPD 509 A 1 
HETATM 5 C C3 MPD . . . C 2 5.663 2.822 21.591 1 97.24 ? C3 MPD 509 A 1 
HETATM 6 C C4 MPD . . . C 2 5.7 4.06 22.445 1 97.39 ? C4 MPD 509 A 1 
HETATM 7 O O4 MPD . . . C 2 4.39 4.343 22.803 1 99.4 ? O4 MPD 509 A 1 
HETATM 8 C C5 MPD . . . C 2 6.481 3.758 23.7 1 97.31 ? C5 MPD 509 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#