data_3IGB # _model_server_result.job_id 4nJLwnpwKXQDLl5Nzki0tA _model_server_result.datetime_utc '2024-10-19 16:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3igb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3IGB # _exptl.entry_id 3IGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8,8-diphenyl-2,3,4,8-tetrahydroimidazo[1,5-a]pyrimidin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.69 _cell.angle_gamma 90 _cell.entry_id 3IGB _cell.length_a 73.137 _cell.length_b 104.33 _cell.length_c 49.551 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 171 A CYS 217 1_555 A SG CYS 375 A CYS 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 233 A CYS 279 1_555 A SG CYS 398 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 285 A CYS 331 1_555 A SG CYS 335 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C18 H18 N4' _chem_comp.formula_weight 290.362 _chem_comp.id 454 _chem_comp.mon_nstd_flag . _chem_comp.name 8,8-diphenyl-2,3,4,8-tetrahydroimidazo[1,5-a]pyrimidin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 454 doub 1 n y C1 C6 454 sing 2 n y N1 C8 454 doub 3 n n N1 C9 454 sing 4 n n C2 C3 454 sing 5 n y N2 C8 454 sing 6 n n N2 C11 454 sing 7 n n N2 C12 454 sing 8 n n C3 C4 454 doub 9 n y N3 C7 454 sing 10 n n N3 C12 454 doub 11 n n C4 C5 454 sing 12 n y C4 C7 454 sing 13 n n N4 C12 454 sing 14 n n C5 C6 454 doub 15 n y C7 C8 454 sing 16 n n C7 C13 454 sing 17 n n C9 C10 454 sing 18 n n C10 C11 454 sing 19 n n C13 C14 454 doub 20 n y C13 C18 454 sing 21 n y C14 C15 454 sing 22 n y C15 C16 454 doub 23 n y C16 C17 454 sing 24 n y C17 C18 454 doub 25 n y C1 H1 454 sing 26 n n C2 H2 454 sing 27 n n C3 H3 454 sing 28 n n N4 HN4 454 sing 29 n n N4 HN4A 454 sing 30 n n C5 H5 454 sing 31 n n C6 H6 454 sing 32 n n C9 H9 454 sing 33 n n C9 H9A 454 sing 34 n n C10 H10 454 sing 35 n n C10 H10A 454 sing 36 n n C11 H11 454 sing 37 n n C11 H11A 454 sing 38 n n C14 H14 454 sing 39 n n C15 H15 454 sing 40 n n C16 H16 454 sing 41 n n C17 H17 454 sing 42 n n C18 H18 454 sing 43 n n # _atom_sites.entry_id 3IGB _atom_sites.fract_transf_matrix[1][1] 0.013673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001122 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 454 A 1 1 1 454 454 . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 8 8 HOH HOH . C 3 HOH A 7 9 9 HOH HOH . C 3 HOH A 8 10 10 HOH HOH . C 3 HOH A 9 11 11 HOH HOH . C 3 HOH A 10 12 12 HOH HOH . C 3 HOH A 11 13 13 HOH HOH . C 3 HOH A 12 14 14 HOH HOH . C 3 HOH A 13 15 15 HOH HOH . C 3 HOH A 14 16 16 HOH HOH . C 3 HOH A 15 18 18 HOH HOH . C 3 HOH A 16 19 19 HOH HOH . C 3 HOH A 17 20 20 HOH HOH . C 3 HOH A 18 21 21 HOH HOH . C 3 HOH A 19 22 22 HOH HOH . C 3 HOH A 20 23 23 HOH HOH . C 3 HOH A 21 24 24 HOH HOH . C 3 HOH A 22 25 25 HOH HOH . C 3 HOH A 23 26 26 HOH HOH . C 3 HOH A 24 27 27 HOH HOH . C 3 HOH A 25 28 28 HOH HOH . C 3 HOH A 26 29 29 HOH HOH . C 3 HOH A 27 30 30 HOH HOH . C 3 HOH A 28 31 31 HOH HOH . C 3 HOH A 29 32 32 HOH HOH . C 3 HOH A 30 33 33 HOH HOH . C 3 HOH A 31 34 34 HOH HOH . C 3 HOH A 32 35 35 HOH HOH . C 3 HOH A 33 36 36 HOH HOH . C 3 HOH A 34 37 37 HOH HOH . C 3 HOH A 35 38 38 HOH HOH . C 3 HOH A 36 39 39 HOH HOH . C 3 HOH A 37 40 40 HOH HOH . C 3 HOH A 38 41 41 HOH HOH . C 3 HOH A 39 42 42 HOH HOH . C 3 HOH A 40 43 43 HOH HOH . C 3 HOH A 41 44 44 HOH HOH . C 3 HOH A 42 45 45 HOH HOH . C 3 HOH A 43 46 46 HOH HOH . C 3 HOH A 44 462 47 HOH HOH . C 3 HOH A 45 463 48 HOH HOH . C 3 HOH A 46 464 49 HOH HOH . C 3 HOH A 47 465 50 HOH HOH . C 3 HOH A 48 466 51 HOH HOH . C 3 HOH A 49 467 52 HOH HOH . C 3 HOH A 50 468 54 HOH HOH . C 3 HOH A 51 469 56 HOH HOH . C 3 HOH A 52 470 57 HOH HOH . C 3 HOH A 53 471 58 HOH HOH . C 3 HOH A 54 472 59 HOH HOH . C 3 HOH A 55 473 60 HOH HOH . C 3 HOH A 56 474 61 HOH HOH . C 3 HOH A 57 475 62 HOH HOH . C 3 HOH A 58 476 63 HOH HOH . C 3 HOH A 59 477 65 HOH HOH . C 3 HOH A 60 478 66 HOH HOH . C 3 HOH A 61 479 67 HOH HOH . C 3 HOH A 62 480 68 HOH HOH . C 3 HOH A 63 481 69 HOH HOH . C 3 HOH A 64 482 70 HOH HOH . C 3 HOH A 65 483 71 HOH HOH . C 3 HOH A 66 484 73 HOH HOH . C 3 HOH A 67 485 74 HOH HOH . C 3 HOH A 68 486 75 HOH HOH . C 3 HOH A 69 487 76 HOH HOH . C 3 HOH A 70 488 78 HOH HOH . C 3 HOH A 71 489 80 HOH HOH . C 3 HOH A 72 490 83 HOH HOH . C 3 HOH A 73 491 85 HOH HOH . C 3 HOH A 74 492 86 HOH HOH . C 3 HOH A 75 493 87 HOH HOH . C 3 HOH A 76 494 88 HOH HOH . C 3 HOH A 77 495 89 HOH HOH . C 3 HOH A 78 496 90 HOH HOH . C 3 HOH A 79 497 91 HOH HOH . C 3 HOH A 80 498 92 HOH HOH . C 3 HOH A 81 499 93 HOH HOH . C 3 HOH A 82 500 94 HOH HOH . C 3 HOH A 83 501 95 HOH HOH . C 3 HOH A 84 502 96 HOH HOH . C 3 HOH A 85 503 99 HOH HOH . C 3 HOH A 86 504 101 HOH HOH . C 3 HOH A 87 505 103 HOH HOH . C 3 HOH A 88 506 104 HOH HOH . C 3 HOH A 89 507 105 HOH HOH . C 3 HOH A 90 508 107 HOH HOH . C 3 HOH A 91 509 108 HOH HOH . C 3 HOH A 92 510 109 HOH HOH . C 3 HOH A 93 511 110 HOH HOH . C 3 HOH A 94 512 111 HOH HOH . C 3 HOH A 95 513 112 HOH HOH . C 3 HOH A 96 514 113 HOH HOH . C 3 HOH A 97 515 114 HOH HOH . C 3 HOH A 98 516 115 HOH HOH . C 3 HOH A 99 517 116 HOH HOH . C 3 HOH A 100 518 117 HOH HOH . C 3 HOH A 101 519 118 HOH HOH . C 3 HOH A 102 520 120 HOH HOH . C 3 HOH A 103 521 121 HOH HOH . C 3 HOH A 104 522 122 HOH HOH . C 3 HOH A 105 523 123 HOH HOH . C 3 HOH A 106 524 127 HOH HOH . C 3 HOH A 107 525 128 HOH HOH . C 3 HOH A 108 526 129 HOH HOH . C 3 HOH A 109 527 131 HOH HOH . C 3 HOH A 110 528 132 HOH HOH . C 3 HOH A 111 529 133 HOH HOH . C 3 HOH A 112 530 134 HOH HOH . C 3 HOH A 113 531 135 HOH HOH . C 3 HOH A 114 532 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 454 . . . B 2 9.91 -7.744 16.074 1 28.2 ? C1 454 1 A 1 HETATM 2 N N1 454 . . . B 2 14.176 -6.1 18.639 1 34.42 ? N1 454 1 A 1 HETATM 3 C C2 454 . . . B 2 10.64 -8.609 16.885 1 33.4 ? C2 454 1 A 1 HETATM 4 N N2 454 . . . B 2 15.364 -5.308 16.713 1 28.53 ? N2 454 1 A 1 HETATM 5 C C3 454 . . . B 2 12.027 -8.466 16.991 1 35.15 ? C3 454 1 A 1 HETATM 6 N N3 454 . . . B 2 14.841 -6.816 15.137 1 26.79 ? N3 454 1 A 1 HETATM 7 C C4 454 . . . B 2 12.717 -7.455 16.286 1 30.18 ? C4 454 1 A 1 HETATM 8 N N4 454 . . . B 2 16.362 -5.082 14.568 1 20.57 ? N4 454 1 A 1 HETATM 9 C C5 454 . . . B 2 11.957 -6.595 15.475 1 27.89 ? C5 454 1 A 1 HETATM 10 C C6 454 . . . B 2 10.572 -6.742 15.372 1 28.23 ? C6 454 1 A 1 HETATM 11 C C7 454 . . . B 2 14.243 -7.339 16.447 1 29.06 ? C7 454 1 A 1 HETATM 12 C C8 454 . . . B 2 14.67 -6.229 17.451 1 26.7 ? C8 454 1 A 1 HETATM 13 C C9 454 . . . B 2 14.539 -4.85 19.342 1 33.71 ? C9 454 1 A 1 HETATM 14 C C10 454 . . . B 2 15.813 -4.193 18.783 1 27.08 ? C10 454 1 A 1 HETATM 15 C C11 454 . . . B 2 15.66 -4.006 17.278 1 25.64 ? C11 454 1 A 1 HETATM 16 C C12 454 . . . B 2 15.533 -5.74 15.424 1 24.77 ? C12 454 1 A 1 HETATM 17 C C13 454 . . . B 2 14.928 -8.675 16.779 1 27.22 ? C13 454 1 A 1 HETATM 18 C C14 454 . . . B 2 14.862 -9.742 15.868 1 25.94 ? C14 454 1 A 1 HETATM 19 C C15 454 . . . B 2 15.477 -10.965 16.136 1 28.37 ? C15 454 1 A 1 HETATM 20 C C16 454 . . . B 2 16.165 -11.141 17.331 1 36.27 ? C16 454 1 A 1 HETATM 21 C C17 454 . . . B 2 16.247 -10.095 18.244 1 43.18 ? C17 454 1 A 1 HETATM 22 C C18 454 . . . B 2 15.63 -8.872 17.973 1 33.93 ? C18 454 1 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #