data_3IGO
#
_model_server_result.job_id            NEIvRAuv01Gy3lxCP84HCg 
_model_server_result.datetime_utc      '2024-11-25 01:57:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3igo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":544}' 
#
_entry.id    3IGO 
#
_exptl.entry_id    3IGO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.25 
_cell.angle_gamma         90 
_cell.entry_id            3IGO 
_cell.length_a            60.388 
_cell.length_b            55.55 
_cell.length_c            81.697 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IGO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 J N N 
? 4 L N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 341 A ASP 393 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc2 A OD1 ASN 343 A ASN 395 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc3 A OD1 ASP 345 A ASP 397 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 A O MET 347 A MET 399 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc5 A OE1 GLU 352 A GLU 404 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc6 A OE2 GLU 352 A GLU 404 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc7 A OD1 ASP 391 A ASP 443 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc8 A OD1 ASP 393 A ASP 445 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc9 A OG SER 395 A SER 447 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc10 A O SER 397 A SER 449 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc11 A OE1 GLU 399 A GLU 451 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc12 A OE1 GLU 402 A GLU 454 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc13 A OE2 GLU 402 A GLU 454 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc14 A OD1 ASP 463 A ASP 515 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc15 A OD1 ASN 465 A ASN 517 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc16 A OD1 ASP 467 A ASP 519 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc17 A O GLU 469 A GLU 521 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc18 A OE1 GLU 474 A GLU 526 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc19 A OE2 GLU 474 A GLU 526 1_555 B CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc20 O O HOH . A HOH 547 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     3IGO 
_atom_sites.fract_transf_matrix[1][1]    0.01656 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004516 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 601 601 CA CA . 
C 2 CA A 1 602 602 CA CA . 
D 2 CA A 1 603 603 CA CA . 
E 3 ANP A 1 610 610 ANP ANP . 
F 4 GOL A 1 1 1 GOL GOL . 
G 4 GOL A 1 539 1 GOL GOL . 
H 4 GOL A 1 540 1 GOL GOL . 
I 2 CA A 1 541 1 CA CA . 
J 4 GOL A 1 542 1 GOL GOL . 
K 5 SRT A 1 543 1 SRT SRT . 
L 4 GOL A 1 544 1 GOL GOL . 
M 6 PO4 A 1 545 1 PO4 PO4 . 
N 4 GOL A 1 546 1 GOL GOL . 
O 7 HOH A 1 2 2 HOH HOH . 
O 7 HOH A 2 3 3 HOH HOH . 
O 7 HOH A 3 4 4 HOH HOH . 
O 7 HOH A 4 5 5 HOH HOH . 
O 7 HOH A 5 6 6 HOH HOH . 
O 7 HOH A 6 7 7 HOH HOH . 
O 7 HOH A 7 8 8 HOH HOH . 
O 7 HOH A 8 9 9 HOH HOH . 
O 7 HOH A 9 10 10 HOH HOH . 
O 7 HOH A 10 11 11 HOH HOH . 
O 7 HOH A 11 12 12 HOH HOH . 
O 7 HOH A 12 13 13 HOH HOH . 
O 7 HOH A 13 14 14 HOH HOH . 
O 7 HOH A 14 15 15 HOH HOH . 
O 7 HOH A 15 16 16 HOH HOH . 
O 7 HOH A 16 18 18 HOH HOH . 
O 7 HOH A 17 19 19 HOH HOH . 
O 7 HOH A 18 20 20 HOH HOH . 
O 7 HOH A 19 21 21 HOH HOH . 
O 7 HOH A 20 22 22 HOH HOH . 
O 7 HOH A 21 23 23 HOH HOH . 
O 7 HOH A 22 24 24 HOH HOH . 
O 7 HOH A 23 25 25 HOH HOH . 
O 7 HOH A 24 26 26 HOH HOH . 
O 7 HOH A 25 27 27 HOH HOH . 
O 7 HOH A 26 28 28 HOH HOH . 
O 7 HOH A 27 29 29 HOH HOH . 
O 7 HOH A 28 30 30 HOH HOH . 
O 7 HOH A 29 31 31 HOH HOH . 
O 7 HOH A 30 32 32 HOH HOH . 
O 7 HOH A 31 33 33 HOH HOH . 
O 7 HOH A 32 34 34 HOH HOH . 
O 7 HOH A 33 35 35 HOH HOH . 
O 7 HOH A 34 36 36 HOH HOH . 
O 7 HOH A 35 37 37 HOH HOH . 
O 7 HOH A 36 38 38 HOH HOH . 
O 7 HOH A 37 39 39 HOH HOH . 
O 7 HOH A 38 40 40 HOH HOH . 
O 7 HOH A 39 41 41 HOH HOH . 
O 7 HOH A 40 42 42 HOH HOH . 
O 7 HOH A 41 43 43 HOH HOH . 
O 7 HOH A 42 47 47 HOH HOH . 
O 7 HOH A 43 547 1 HOH HOH . 
O 7 HOH A 44 548 1 HOH HOH . 
O 7 HOH A 45 549 2 HOH HOH . 
O 7 HOH A 46 550 3 HOH HOH . 
O 7 HOH A 47 551 4 HOH HOH . 
O 7 HOH A 48 552 7 HOH HOH . 
O 7 HOH A 49 553 13 HOH HOH . 
O 7 HOH A 50 554 14 HOH HOH . 
O 7 HOH A 51 555 15 HOH HOH . 
O 7 HOH A 52 556 16 HOH HOH . 
O 7 HOH A 53 557 18 HOH HOH . 
O 7 HOH A 54 558 19 HOH HOH . 
O 7 HOH A 55 559 22 HOH HOH . 
O 7 HOH A 56 560 25 HOH HOH . 
O 7 HOH A 57 561 26 HOH HOH . 
O 7 HOH A 58 562 29 HOH HOH . 
O 7 HOH A 59 563 31 HOH HOH . 
O 7 HOH A 60 564 32 HOH HOH . 
O 7 HOH A 61 565 38 HOH HOH . 
O 7 HOH A 62 566 41 HOH HOH . 
O 7 HOH A 63 567 53 HOH HOH . 
O 7 HOH A 64 568 58 HOH HOH . 
O 7 HOH A 65 569 62 HOH HOH . 
O 7 HOH A 66 570 64 HOH HOH . 
O 7 HOH A 67 571 67 HOH HOH . 
O 7 HOH A 68 572 68 HOH HOH . 
O 7 HOH A 69 573 73 HOH HOH . 
O 7 HOH A 70 574 75 HOH HOH . 
O 7 HOH A 71 575 82 HOH HOH . 
O 7 HOH A 72 576 85 HOH HOH . 
O 7 HOH A 73 577 87 HOH HOH . 
O 7 HOH A 74 578 88 HOH HOH . 
O 7 HOH A 75 579 96 HOH HOH . 
O 7 HOH A 76 580 99 HOH HOH . 
O 7 HOH A 77 581 104 HOH HOH . 
O 7 HOH A 78 582 108 HOH HOH . 
O 7 HOH A 79 583 113 HOH HOH . 
O 7 HOH A 80 584 116 HOH HOH . 
O 7 HOH A 81 585 118 HOH HOH . 
O 7 HOH A 82 586 125 HOH HOH . 
O 7 HOH A 83 587 141 HOH HOH . 
O 7 HOH A 84 588 142 HOH HOH . 
O 7 HOH A 85 589 152 HOH HOH . 
O 7 HOH A 86 590 157 HOH HOH . 
O 7 HOH A 87 591 173 HOH HOH . 
O 7 HOH A 88 592 175 HOH HOH . 
O 7 HOH A 89 593 176 HOH HOH . 
O 7 HOH A 90 594 178 HOH HOH . 
O 7 HOH A 91 595 179 HOH HOH . 
O 7 HOH A 92 596 180 HOH HOH . 
O 7 HOH A 93 597 181 HOH HOH . 
O 7 HOH A 94 598 183 HOH HOH . 
O 7 HOH A 95 599 184 HOH HOH . 
O 7 HOH A 96 600 186 HOH HOH . 
O 7 HOH A 97 604 187 HOH HOH . 
O 7 HOH A 98 605 188 HOH HOH . 
O 7 HOH A 99 606 189 HOH HOH . 
O 7 HOH A 100 607 190 HOH HOH . 
O 7 HOH A 101 608 192 HOH HOH . 
O 7 HOH A 102 609 193 HOH HOH . 
O 7 HOH A 103 611 194 HOH HOH . 
O 7 HOH A 104 612 195 HOH HOH . 
O 7 HOH A 105 613 196 HOH HOH . 
O 7 HOH A 106 614 197 HOH HOH . 
O 7 HOH A 107 615 198 HOH HOH . 
O 7 HOH A 108 616 199 HOH HOH . 
O 7 HOH A 109 617 201 HOH HOH . 
O 7 HOH A 110 618 202 HOH HOH . 
O 7 HOH A 111 619 206 HOH HOH . 
O 7 HOH A 112 620 207 HOH HOH . 
O 7 HOH A 113 621 209 HOH HOH . 
O 7 HOH A 114 622 212 HOH HOH . 
O 7 HOH A 115 623 213 HOH HOH . 
O 7 HOH A 116 624 214 HOH HOH . 
O 7 HOH A 117 625 215 HOH HOH . 
O 7 HOH A 118 626 216 HOH HOH . 
O 7 HOH A 119 627 217 HOH HOH . 
O 7 HOH A 120 628 218 HOH HOH . 
O 7 HOH A 121 629 219 HOH HOH . 
O 7 HOH A 122 630 220 HOH HOH . 
O 7 HOH A 123 631 221 HOH HOH . 
O 7 HOH A 124 632 222 HOH HOH . 
O 7 HOH A 125 633 223 HOH HOH . 
O 7 HOH A 126 634 224 HOH HOH . 
O 7 HOH A 127 635 228 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 4 15.476 17.559 3.703 1 78.23 ? C1 GOL 544 A 1 
HETATM 2 O O1 GOL . . . L 4 14.346 18.376 3.451 1 77.48 ? O1 GOL 544 A 1 
HETATM 3 C C2 GOL . . . L 4 15.619 17.222 5.195 1 78.63 ? C2 GOL 544 A 1 
HETATM 4 O O2 GOL . . . L 4 15.098 15.929 5.462 1 76.48 ? O2 GOL 544 A 1 
HETATM 5 C C3 GOL . . . L 4 14.934 18.269 6.083 1 78.53 ? C3 GOL 544 A 1 
HETATM 6 O O3 GOL . . . L 4 15.742 18.692 7.165 1 78.65 ? O3 GOL 544 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#