data_3IGR
#
_model_server_result.job_id            DBuRPQFfLm-m5sLJmcWraQ 
_model_server_result.datetime_utc      '2025-07-03 01:15:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3igr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":186}' 
#
_entry.id    3IGR 
#
_exptl.entry_id    3IGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IGR 
_cell.length_a            63.504 
_cell.length_b            107.173 
_cell.length_c            145.719 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 3 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 72.8595 
3 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 107.173 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 27 A PHE 27 1_555 A N MSE 28 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C MSE 28 A MSE 28 1_555 A N ARG 29 A ARG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C ILE 112 A ILE 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 113 A MSE 113 1_555 A N ARG 114 A ARG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C TRP 123 A TRP 123 1_555 A N MSE 124 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 124 A MSE 124 1_555 A N PHE 125 A PHE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C ILE 133 A ILE 133 1_555 A N MSE 134 A MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale8 A C MSE 134 A MSE 134 1_555 A N ALA 135 A ALA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale9 B C PHE 27 B PHE 27 1_555 B N MSE 28 B MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale10 B C MSE 28 B MSE 28 1_555 B N ARG 29 B ARG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 B C ILE 112 B ILE 112 1_555 B N MSE 113 B MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 B C MSE 113 B MSE 113 1_555 B N ARG 114 B ARG 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 B C TRP 123 B TRP 123 1_555 B N MSE 124 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale14 B C MSE 124 B MSE 124 1_555 B N PHE 125 B PHE 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 B C ILE 133 B ILE 133 1_555 B N MSE 134 B MSE 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale16 B C MSE 134 B MSE 134 1_555 B N ALA 135 B ALA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
metalc ? metalc1 D NA NA . A NA 186 1_555 G O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3IGR 
_atom_sites.fract_transf_matrix[1][1]    0.015747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 185 1 NA NA . 
D 2 NA A 1 186 3 NA NA . 
E 2 NA B 1 185 2 NA NA . 
F 3 GOL B 1 186 1 GOL GOL . 
G 4 HOH A 1 187 1 HOH HOH . 
G 4 HOH A 2 188 4 HOH HOH . 
G 4 HOH A 3 189 5 HOH HOH . 
G 4 HOH A 4 190 8 HOH HOH . 
G 4 HOH A 5 191 11 HOH HOH . 
G 4 HOH A 6 192 13 HOH HOH . 
G 4 HOH A 7 193 17 HOH HOH . 
G 4 HOH A 8 194 22 HOH HOH . 
G 4 HOH A 9 195 23 HOH HOH . 
G 4 HOH A 10 196 24 HOH HOH . 
G 4 HOH A 11 197 28 HOH HOH . 
G 4 HOH A 12 198 34 HOH HOH . 
G 4 HOH A 13 199 41 HOH HOH . 
G 4 HOH A 14 200 42 HOH HOH . 
G 4 HOH A 15 201 43 HOH HOH . 
G 4 HOH A 16 202 44 HOH HOH . 
G 4 HOH A 17 203 48 HOH HOH . 
G 4 HOH A 18 204 49 HOH HOH . 
G 4 HOH A 19 205 52 HOH HOH . 
G 4 HOH A 20 206 56 HOH HOH . 
G 4 HOH A 21 207 57 HOH HOH . 
G 4 HOH A 22 208 58 HOH HOH . 
G 4 HOH A 23 209 59 HOH HOH . 
G 4 HOH A 24 210 60 HOH HOH . 
G 4 HOH A 25 211 61 HOH HOH . 
G 4 HOH A 26 212 62 HOH HOH . 
G 4 HOH A 27 213 63 HOH HOH . 
G 4 HOH A 28 214 64 HOH HOH . 
G 4 HOH A 29 215 65 HOH HOH . 
G 4 HOH A 30 216 66 HOH HOH . 
G 4 HOH A 31 217 67 HOH HOH . 
G 4 HOH A 32 218 68 HOH HOH . 
G 4 HOH A 33 219 87 HOH HOH . 
G 4 HOH A 34 220 88 HOH HOH . 
G 4 HOH A 35 221 89 HOH HOH . 
G 4 HOH A 36 222 90 HOH HOH . 
G 4 HOH A 37 223 91 HOH HOH . 
G 4 HOH A 38 224 95 HOH HOH . 
G 4 HOH A 39 225 96 HOH HOH . 
G 4 HOH A 40 226 97 HOH HOH . 
G 4 HOH A 41 227 98 HOH HOH . 
G 4 HOH A 42 228 99 HOH HOH . 
G 4 HOH A 43 229 100 HOH HOH . 
G 4 HOH A 44 230 101 HOH HOH . 
G 4 HOH A 45 231 102 HOH HOH . 
G 4 HOH A 46 232 103 HOH HOH . 
G 4 HOH A 47 233 104 HOH HOH . 
G 4 HOH A 48 234 126 HOH HOH . 
G 4 HOH A 49 235 127 HOH HOH . 
G 4 HOH A 50 236 128 HOH HOH . 
G 4 HOH A 51 237 137 HOH HOH . 
G 4 HOH A 52 238 138 HOH HOH . 
G 4 HOH A 53 239 139 HOH HOH . 
G 4 HOH A 54 240 140 HOH HOH . 
G 4 HOH A 55 241 142 HOH HOH . 
H 4 HOH B 1 187 2 HOH HOH . 
H 4 HOH B 2 188 3 HOH HOH . 
H 4 HOH B 3 189 6 HOH HOH . 
H 4 HOH B 4 190 7 HOH HOH . 
H 4 HOH B 5 191 9 HOH HOH . 
H 4 HOH B 6 192 10 HOH HOH . 
H 4 HOH B 7 193 12 HOH HOH . 
H 4 HOH B 8 194 14 HOH HOH . 
H 4 HOH B 9 195 15 HOH HOH . 
H 4 HOH B 10 196 16 HOH HOH . 
H 4 HOH B 11 197 18 HOH HOH . 
H 4 HOH B 12 198 19 HOH HOH . 
H 4 HOH B 13 199 20 HOH HOH . 
H 4 HOH B 14 200 21 HOH HOH . 
H 4 HOH B 15 201 25 HOH HOH . 
H 4 HOH B 16 202 26 HOH HOH . 
H 4 HOH B 17 203 27 HOH HOH . 
H 4 HOH B 18 204 29 HOH HOH . 
H 4 HOH B 19 205 30 HOH HOH . 
H 4 HOH B 20 206 31 HOH HOH . 
H 4 HOH B 21 207 32 HOH HOH . 
H 4 HOH B 22 208 33 HOH HOH . 
H 4 HOH B 23 209 35 HOH HOH . 
H 4 HOH B 24 210 36 HOH HOH . 
H 4 HOH B 25 211 37 HOH HOH . 
H 4 HOH B 26 212 38 HOH HOH . 
H 4 HOH B 27 213 39 HOH HOH . 
H 4 HOH B 28 214 40 HOH HOH . 
H 4 HOH B 29 215 45 HOH HOH . 
H 4 HOH B 30 216 46 HOH HOH . 
H 4 HOH B 31 217 47 HOH HOH . 
H 4 HOH B 32 218 50 HOH HOH . 
H 4 HOH B 33 219 51 HOH HOH . 
H 4 HOH B 34 220 53 HOH HOH . 
H 4 HOH B 35 221 54 HOH HOH . 
H 4 HOH B 36 222 55 HOH HOH . 
H 4 HOH B 37 223 69 HOH HOH . 
H 4 HOH B 38 224 70 HOH HOH . 
H 4 HOH B 39 225 71 HOH HOH . 
H 4 HOH B 40 226 72 HOH HOH . 
H 4 HOH B 41 227 73 HOH HOH . 
H 4 HOH B 42 228 74 HOH HOH . 
H 4 HOH B 43 229 75 HOH HOH . 
H 4 HOH B 44 230 76 HOH HOH . 
H 4 HOH B 45 231 77 HOH HOH . 
H 4 HOH B 46 232 78 HOH HOH . 
H 4 HOH B 47 233 79 HOH HOH . 
H 4 HOH B 48 234 80 HOH HOH . 
H 4 HOH B 49 235 81 HOH HOH . 
H 4 HOH B 50 236 82 HOH HOH . 
H 4 HOH B 51 237 83 HOH HOH . 
H 4 HOH B 52 238 84 HOH HOH . 
H 4 HOH B 53 239 85 HOH HOH . 
H 4 HOH B 54 240 86 HOH HOH . 
H 4 HOH B 55 241 92 HOH HOH . 
H 4 HOH B 56 242 93 HOH HOH . 
H 4 HOH B 57 243 94 HOH HOH . 
H 4 HOH B 58 244 105 HOH HOH . 
H 4 HOH B 59 245 106 HOH HOH . 
H 4 HOH B 60 246 107 HOH HOH . 
H 4 HOH B 61 247 108 HOH HOH . 
H 4 HOH B 62 248 109 HOH HOH . 
H 4 HOH B 63 249 110 HOH HOH . 
H 4 HOH B 64 250 111 HOH HOH . 
H 4 HOH B 65 251 112 HOH HOH . 
H 4 HOH B 66 252 113 HOH HOH . 
H 4 HOH B 67 253 114 HOH HOH . 
H 4 HOH B 68 254 115 HOH HOH . 
H 4 HOH B 69 255 116 HOH HOH . 
H 4 HOH B 70 256 117 HOH HOH . 
H 4 HOH B 71 257 118 HOH HOH . 
H 4 HOH B 72 258 119 HOH HOH . 
H 4 HOH B 73 259 120 HOH HOH . 
H 4 HOH B 74 260 121 HOH HOH . 
H 4 HOH B 75 261 122 HOH HOH . 
H 4 HOH B 76 262 123 HOH HOH . 
H 4 HOH B 77 263 124 HOH HOH . 
H 4 HOH B 78 264 125 HOH HOH . 
H 4 HOH B 79 265 129 HOH HOH . 
H 4 HOH B 80 266 130 HOH HOH . 
H 4 HOH B 81 267 131 HOH HOH . 
H 4 HOH B 82 268 132 HOH HOH . 
H 4 HOH B 83 269 133 HOH HOH . 
H 4 HOH B 84 270 134 HOH HOH . 
H 4 HOH B 85 271 135 HOH HOH . 
H 4 HOH B 86 272 136 HOH HOH . 
H 4 HOH B 87 273 141 HOH HOH . 
H 4 HOH B 88 274 143 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               15.585 
_atom_site.Cartn_y               10.1 
_atom_site.Cartn_z               50.132 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           186 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#