data_3IHJ
#
_model_server_result.job_id            Q6EF8T0XIqyVm5T2akxOnw 
_model_server_result.datetime_utc      '2024-11-22 06:52:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ihj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    3IHJ 
#
_exptl.entry_id    3IHJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IHJ 
_cell.length_a            92.73 
_cell.length_b            92.73 
_cell.length_c            262.87 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IHJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -46.365 80.306536 43.811667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C4A 
_struct_conn.ptnr1_label_comp_id            PLP 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             PLP 
_struct_conn.ptnr1_auth_seq_id              1 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            NZ 
_struct_conn.ptnr2_label_comp_id            LYS 
_struct_conn.ptnr2_label_seq_id             316 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             LYS 
_struct_conn.ptnr2_auth_seq_id              341 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.596 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     3IHJ 
_atom_sites.fract_transf_matrix[1][1]    0.010784 
_atom_sites.fract_transf_matrix[1][2]    0.006226 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012452 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PLP A 1 1 1 PLP PLP . 
C 3 PO4 A 1 524 1 PO4 PO4 . 
D 3 PO4 A 1 2 2 PO4 PO4 . 
E 4 HOH A 1 3 3 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 5 5 HOH HOH . 
E 4 HOH A 4 7 7 HOH HOH . 
E 4 HOH A 5 8 8 HOH HOH . 
E 4 HOH A 6 9 9 HOH HOH . 
E 4 HOH A 7 10 10 HOH HOH . 
E 4 HOH A 8 11 11 HOH HOH . 
E 4 HOH A 9 12 12 HOH HOH . 
E 4 HOH A 10 13 13 HOH HOH . 
E 4 HOH A 11 14 14 HOH HOH . 
E 4 HOH A 12 16 16 HOH HOH . 
E 4 HOH A 13 17 17 HOH HOH . 
E 4 HOH A 14 18 18 HOH HOH . 
E 4 HOH A 15 19 19 HOH HOH . 
E 4 HOH A 16 20 20 HOH HOH . 
E 4 HOH A 17 21 21 HOH HOH . 
E 4 HOH A 18 22 22 HOH HOH . 
E 4 HOH A 19 23 23 HOH HOH . 
E 4 HOH A 20 24 24 HOH HOH . 
E 4 HOH A 21 25 25 HOH HOH . 
E 4 HOH A 22 525 1 HOH HOH . 
E 4 HOH A 23 526 26 HOH HOH . 
E 4 HOH A 24 527 27 HOH HOH . 
E 4 HOH A 25 528 28 HOH HOH . 
E 4 HOH A 26 529 29 HOH HOH . 
E 4 HOH A 27 530 30 HOH HOH . 
E 4 HOH A 28 531 31 HOH HOH . 
E 4 HOH A 29 532 32 HOH HOH . 
E 4 HOH A 30 533 33 HOH HOH . 
E 4 HOH A 31 534 34 HOH HOH . 
E 4 HOH A 32 535 35 HOH HOH . 
E 4 HOH A 33 536 36 HOH HOH . 
E 4 HOH A 34 537 37 HOH HOH . 
E 4 HOH A 35 538 38 HOH HOH . 
E 4 HOH A 36 539 39 HOH HOH . 
E 4 HOH A 37 540 40 HOH HOH . 
E 4 HOH A 38 541 41 HOH HOH . 
E 4 HOH A 39 542 42 HOH HOH . 
E 4 HOH A 40 543 43 HOH HOH . 
E 4 HOH A 41 544 44 HOH HOH . 
E 4 HOH A 42 545 45 HOH HOH . 
E 4 HOH A 43 546 46 HOH HOH . 
E 4 HOH A 44 547 47 HOH HOH . 
E 4 HOH A 45 548 48 HOH HOH . 
E 4 HOH A 46 549 49 HOH HOH . 
E 4 HOH A 47 550 50 HOH HOH . 
E 4 HOH A 48 551 51 HOH HOH . 
E 4 HOH A 49 552 52 HOH HOH . 
E 4 HOH A 50 553 53 HOH HOH . 
E 4 HOH A 51 554 54 HOH HOH . 
E 4 HOH A 52 555 55 HOH HOH . 
E 4 HOH A 53 556 56 HOH HOH . 
E 4 HOH A 54 557 57 HOH HOH . 
E 4 HOH A 55 558 58 HOH HOH . 
E 4 HOH A 56 559 59 HOH HOH . 
E 4 HOH A 57 560 60 HOH HOH . 
E 4 HOH A 58 561 61 HOH HOH . 
E 4 HOH A 59 562 62 HOH HOH . 
E 4 HOH A 60 563 63 HOH HOH . 
E 4 HOH A 61 564 64 HOH HOH . 
E 4 HOH A 62 565 65 HOH HOH . 
E 4 HOH A 63 566 66 HOH HOH . 
E 4 HOH A 64 567 67 HOH HOH . 
E 4 HOH A 65 568 68 HOH HOH . 
E 4 HOH A 66 569 70 HOH HOH . 
E 4 HOH A 67 570 71 HOH HOH . 
E 4 HOH A 68 571 72 HOH HOH . 
E 4 HOH A 69 572 73 HOH HOH . 
E 4 HOH A 70 573 74 HOH HOH . 
E 4 HOH A 71 574 75 HOH HOH . 
E 4 HOH A 72 575 76 HOH HOH . 
E 4 HOH A 73 576 77 HOH HOH . 
E 4 HOH A 74 577 78 HOH HOH . 
E 4 HOH A 75 578 79 HOH HOH . 
E 4 HOH A 76 579 80 HOH HOH . 
E 4 HOH A 77 580 81 HOH HOH . 
E 4 HOH A 78 581 82 HOH HOH . 
E 4 HOH A 79 582 83 HOH HOH . 
E 4 HOH A 80 583 84 HOH HOH . 
E 4 HOH A 81 584 85 HOH HOH . 
E 4 HOH A 82 585 86 HOH HOH . 
E 4 HOH A 83 586 87 HOH HOH . 
E 4 HOH A 84 587 88 HOH HOH . 
E 4 HOH A 85 588 90 HOH HOH . 
E 4 HOH A 86 589 91 HOH HOH . 
E 4 HOH A 87 590 92 HOH HOH . 
E 4 HOH A 88 591 94 HOH HOH . 
E 4 HOH A 89 592 95 HOH HOH . 
E 4 HOH A 90 593 96 HOH HOH . 
E 4 HOH A 91 594 97 HOH HOH . 
E 4 HOH A 92 595 98 HOH HOH . 
E 4 HOH A 93 596 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . B 2 -14.479 57.25 9.954 1 18.16 ? N1 PLP 1 A 1 
HETATM 2 C C2 PLP . . . B 2 -15.426 58.026 10.522 1 17.65 ? C2 PLP 1 A 1 
HETATM 3 C C2A PLP . . . B 2 -15.857 59.218 9.789 1 17.36 ? C2A PLP 1 A 1 
HETATM 4 C C3 PLP . . . B 2 -15.929 57.691 11.766 1 18.31 ? C3 PLP 1 A 1 
HETATM 5 O O3 PLP . . . B 2 -16.923 58.461 12.327 1 19.41 ? O3 PLP 1 A 1 
HETATM 6 C C4 PLP . . . B 2 -15.462 56.538 12.415 1 18.86 ? C4 PLP 1 A 1 
HETATM 7 C C4A PLP . . . B 2 -15.976 56.223 13.796 1 20.85 ? C4A PLP 1 A 1 
HETATM 8 C C5 PLP . . . B 2 -14.499 55.751 11.839 1 18.39 ? C5 PLP 1 A 1 
HETATM 9 C C6 PLP . . . B 2 -14.048 56.126 10.602 1 17.44 ? C6 PLP 1 A 1 
HETATM 10 C C5A PLP . . . B 2 -13.974 54.437 12.444 1 19.72 ? C5A PLP 1 A 1 
HETATM 11 O O4P PLP . . . B 2 -14.937 53.378 12.449 1 23.23 ? O4P PLP 1 A 1 
HETATM 12 P P PLP . . . B 2 -14.823 52.041 13.406 1 23.51 ? P PLP 1 A 1 
HETATM 13 O O1P PLP . . . B 2 -13.316 51.812 13.494 1 22.45 ? O1P PLP 1 A 1 
HETATM 14 O O2P PLP . . . B 2 -15.512 51.037 12.568 1 20.25 ? O2P PLP 1 A 1 
HETATM 15 O O3P PLP . . . B 2 -15.407 52.508 14.67 1 25.71 ? O3P PLP 1 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#