data_3IHK # _model_server_result.job_id ntFC4QIVgZdLybJuLaIjDQ _model_server_result.datetime_utc '2024-11-14 07:56:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ihk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":221}' # _entry.id 3IHK # _exptl.entry_id 3IHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IHK _cell.length_a 105.157 _cell.length_b 105.157 _cell.length_c 121.383 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,CA 1 1,2 B,C,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 65 A VAL 65 1_555 A N MSE 66 A MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 66 A MSE 66 1_555 A N ALA 67 A ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C HIS 104 A HIS 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 105 A MSE 105 1_555 A N LEU 106 A LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C PHE 120 A PHE 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 121 A MSE 121 1_555 A N ARG 122 A ARG 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale7 A C ASP 148 A ASP 148 1_555 A N MSE 149 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 149 A MSE 149 1_555 A N VAL 150 A VAL 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C PHE 154 A PHE 154 1_555 A N MSE 155 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 A C MSE 155 A MSE 155 1_555 A N ALA 156 A ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 B C VAL 65 B VAL 65 1_555 B N MSE 66 B MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C MSE 66 B MSE 66 1_555 B N ALA 67 B ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 B C HIS 104 B HIS 104 1_555 B N MSE 105 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 105 B MSE 105 1_555 B N LEU 106 B LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale15 B C PHE 120 B PHE 120 1_555 B N MSE 121 B MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 B C MSE 121 B MSE 121 1_555 B N ARG 122 B ARG 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C ASP 148 B ASP 148 1_555 B N MSE 149 B MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C MSE 149 B MSE 149 1_555 B N VAL 150 B VAL 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale19 B C PHE 154 B PHE 154 1_555 B N MSE 155 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 155 B MSE 155 1_555 B N ALA 156 B ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 C C VAL 65 C VAL 65 1_555 C N MSE 66 C MSE 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 C C MSE 66 C MSE 66 1_555 C N ALA 67 C ALA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 C C HIS 104 C HIS 104 1_555 C N MSE 105 C MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 C C MSE 105 C MSE 105 1_555 C N LEU 106 C LEU 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 C C PHE 120 C PHE 120 1_555 C N MSE 121 C MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 C C MSE 121 C MSE 121 1_555 C N ARG 122 C ARG 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 C C ASP 148 C ASP 148 1_555 C N MSE 149 C MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale28 C C MSE 149 C MSE 149 1_555 C N VAL 150 C VAL 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale29 C C PHE 154 C PHE 154 1_555 C N MSE 155 C MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 C C MSE 155 C MSE 155 1_555 C N ALA 156 C ALA 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OD2 ASP 47 A ASP 47 1_555 E MG MG . A MG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc2 A OD2 ASP 75 A ASP 75 1_555 F MG MG . A MG 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 E MG MG . A MG 219 1_555 D O3A TPP . A TPP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 B OD1 ASP 47 B ASP 47 1_555 M MG MG . B MG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 B OD2 ASP 75 B ASP 75 1_555 M MG MG . B MG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 3IHK _atom_sites.fract_transf_matrix[1][1] 0.00951 _atom_sites.fract_transf_matrix[1][2] 0.00549 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TPP A 1 902 902 TPP TPP . E 3 MG A 1 219 219 MG MG . F 3 MG A 1 220 220 MG MG . G 4 PO4 A 1 221 221 PO4 PO4 . H 4 PO4 A 1 222 222 PO4 PO4 . I 4 PO4 A 1 223 223 PO4 PO4 . J 4 PO4 A 1 224 224 PO4 PO4 . K 4 PO4 A 1 225 225 PO4 PO4 . L 4 PO4 A 1 226 226 PO4 PO4 . M 3 MG B 1 219 219 MG MG . N 3 MG B 1 220 220 MG MG . O 4 PO4 B 1 221 221 PO4 PO4 . P 4 PO4 B 1 222 222 PO4 PO4 . Q 4 PO4 B 1 223 223 PO4 PO4 . R 4 PO4 B 1 224 224 PO4 PO4 . S 4 PO4 B 1 225 225 PO4 PO4 . T 4 PO4 B 1 226 226 PO4 PO4 . U 2 TPP C 1 902 902 TPP TPP . V 2 TPP C 1 219 902 TPP TPP . W 3 MG C 1 220 219 MG MG . X 3 MG C 1 221 220 MG MG . Y 4 PO4 C 1 222 221 PO4 PO4 . Z 4 PO4 C 1 223 222 PO4 PO4 . AA 4 PO4 C 1 224 223 PO4 PO4 . BA 4 PO4 C 1 225 224 PO4 PO4 . CA 5 HOH A 1 232 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . O 4 13.168 30.775 51.314 1 77.69 ? P PO4 221 B 1 HETATM 2 O O1 PO4 . . . O 4 14.309 30.673 52.269 1 77.05 ? O1 PO4 221 B 1 HETATM 3 O O2 PO4 . . . O 4 13.583 31.564 50.125 1 78.12 ? O2 PO4 221 B 1 HETATM 4 O O3 PO4 . . . O 4 12.76 29.41 50.879 1 77.04 ? O3 PO4 221 B 1 HETATM 5 O O4 PO4 . . . O 4 12.022 31.457 51.98 1 76.3 ? O4 PO4 221 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #