data_3IID
#
_model_server_result.job_id            h4V0WrpGypj-Z6lkdo3Ckw 
_model_server_result.datetime_utc      '2024-11-26 12:13:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3iid 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":400}' 
#
_entry.id    3IID 
#
_exptl.entry_id    3IID 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3IID 
_cell.length_a            86.26 
_cell.length_b            86.26 
_cell.length_c            51.04 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IID 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     3IID 
_atom_sites.fract_transf_matrix[1][1]    0.011593 
_atom_sites.fract_transf_matrix[1][2]    0.006693 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 APR A 1 400 400 APR APR . 
C 3 NO3 A 1 401 401 NO3 NO3 . 
D 4 HOH A 1 501 1 HOH HOH . 
D 4 HOH A 2 502 2 HOH HOH . 
D 4 HOH A 3 503 3 HOH HOH . 
D 4 HOH A 4 504 4 HOH HOH . 
D 4 HOH A 5 505 5 HOH HOH . 
D 4 HOH A 6 506 6 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 8 HOH HOH . 
D 4 HOH A 9 509 9 HOH HOH . 
D 4 HOH A 10 510 10 HOH HOH . 
D 4 HOH A 11 511 11 HOH HOH . 
D 4 HOH A 12 512 12 HOH HOH . 
D 4 HOH A 13 513 13 HOH HOH . 
D 4 HOH A 14 514 14 HOH HOH . 
D 4 HOH A 15 515 15 HOH HOH . 
D 4 HOH A 16 516 16 HOH HOH . 
D 4 HOH A 17 517 17 HOH HOH . 
D 4 HOH A 18 518 18 HOH HOH . 
D 4 HOH A 19 519 19 HOH HOH . 
D 4 HOH A 20 520 20 HOH HOH . 
D 4 HOH A 21 521 21 HOH HOH . 
D 4 HOH A 22 522 22 HOH HOH . 
D 4 HOH A 23 523 23 HOH HOH . 
D 4 HOH A 24 524 24 HOH HOH . 
D 4 HOH A 25 525 25 HOH HOH . 
D 4 HOH A 26 526 26 HOH HOH . 
D 4 HOH A 27 527 27 HOH HOH . 
D 4 HOH A 28 529 29 HOH HOH . 
D 4 HOH A 29 530 30 HOH HOH . 
D 4 HOH A 30 531 31 HOH HOH . 
D 4 HOH A 31 532 32 HOH HOH . 
D 4 HOH A 32 533 33 HOH HOH . 
D 4 HOH A 33 534 34 HOH HOH . 
D 4 HOH A 34 535 35 HOH HOH . 
D 4 HOH A 35 536 36 HOH HOH . 
D 4 HOH A 36 537 37 HOH HOH . 
D 4 HOH A 37 538 38 HOH HOH . 
D 4 HOH A 38 539 39 HOH HOH . 
D 4 HOH A 39 540 40 HOH HOH . 
D 4 HOH A 40 541 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . B 2 6.438 -34.482 -6.12 1 37.77 ? N1 APR 400 A 1 
HETATM 2 C C2 APR . . . B 2 6.259 -34.128 -4.841 1 37.3 ? C2 APR 400 A 1 
HETATM 3 N N3 APR . . . B 2 6.61 -34.89 -3.794 1 37.74 ? N3 APR 400 A 1 
HETATM 4 C C4 APR . . . B 2 7.201 -36.099 -4.048 1 38.39 ? C4 APR 400 A 1 
HETATM 5 C C5 APR . . . B 2 7.445 -36.572 -5.421 1 39.11 ? C5 APR 400 A 1 
HETATM 6 C C6 APR . . . B 2 7.004 -35.672 -6.493 1 39.85 ? C6 APR 400 A 1 
HETATM 7 N N6 APR . . . B 2 7.199 -36.002 -7.785 1 38.19 ? N6 APR 400 A 1 
HETATM 8 N N7 APR . . . B 2 8.035 -37.777 -5.33 1 38.69 ? N7 APR 400 A 1 
HETATM 9 C C8 APR . . . B 2 8.134 -38.064 -4.011 1 37.95 ? C8 APR 400 A 1 
HETATM 10 N N9 APR . . . B 2 7.651 -37.058 -3.262 1 37.91 ? N9 APR 400 A 1 
HETATM 11 C C1' APR . . . B 2 7.591 -36.894 -1.799 1 36.84 ? C1' APR 400 A 1 
HETATM 12 C C2' APR . . . B 2 7.927 -38.123 -0.974 1 37.71 ? C2' APR 400 A 1 
HETATM 13 O O2' APR . . . B 2 6.851 -39.039 -0.766 1 37.93 ? O2' APR 400 A 1 
HETATM 14 C C3' APR . . . B 2 8.324 -37.456 0.336 1 35.55 ? C3' APR 400 A 1 
HETATM 15 O O3' APR . . . B 2 7.196 -37.394 1.187 1 34.18 ? O3' APR 400 A 1 
HETATM 16 O O4' APR . . . B 2 8.656 -35.965 -1.482 1 33.98 ? O4' APR 400 A 1 
HETATM 17 C C4' APR . . . B 2 8.889 -36.097 -0.062 1 35.65 ? C4' APR 400 A 1 
HETATM 18 C C5' APR . . . B 2 10.382 -35.936 0.223 1 36.71 ? C5' APR 400 A 1 
HETATM 19 O O5' APR . . . B 2 11.175 -37.017 -0.32 1 32.94 ? O5' APR 400 A 1 
HETATM 20 P PA APR . . . B 2 12.638 -36.886 -0.832 1 36.78 ? PA APR 400 A 1 
HETATM 21 O O1A APR . . . B 2 12.872 -36.192 -2.135 1 32.29 ? O1A APR 400 A 1 
HETATM 22 O O2A APR . . . B 2 13.255 -38.294 -0.865 1 41.02 ? O2A APR 400 A 1 
HETATM 23 O O3A APR . . . B 2 13.382 -35.946 0.277 1 35.28 ? O3A APR 400 A 1 
HETATM 24 P PB APR . . . B 2 13.994 -36.306 1.747 1 37 ? PB APR 400 A 1 
HETATM 25 O O1B APR . . . B 2 14.233 -34.952 2.414 1 35.76 ? O1B APR 400 A 1 
HETATM 26 O O2B APR . . . B 2 13.171 -37.26 2.518 1 31.44 ? O2B APR 400 A 1 
HETATM 27 O O5D APR . . . B 2 15.429 -36.909 1.441 1 36.39 ? O5D APR 400 A 1 
HETATM 28 C C5D APR . . . B 2 16.382 -36.337 0.583 1 44.36 ? C5D APR 400 A 1 
HETATM 29 O O4D APR . . . B 2 17.882 -37.556 -0.848 1 56.23 ? O4D APR 400 A 1 
HETATM 30 O O1D APR . . . B 2 19.535 -36.658 -2.307 1 61.26 ? O1D APR 400 A 1 
HETATM 31 C C1D APR . . . B 2 18.785 -36.487 -1.103 1 58.07 ? C1D APR 400 A 1 
HETATM 32 O O2D APR . . . B 2 20.647 -37.569 -0.098 1 59.76 ? O2D APR 400 A 1 
HETATM 33 C C2D APR . . . B 2 19.672 -36.547 0.109 1 58.41 ? C2D APR 400 A 1 
HETATM 34 O O3D APR . . . B 2 19.243 -38.087 1.94 1 62.75 ? O3D APR 400 A 1 
HETATM 35 C C3D APR . . . B 2 18.74 -36.95 1.223 1 57.22 ? C3D APR 400 A 1 
HETATM 36 C C4D APR . . . B 2 17.487 -37.377 0.498 1 51.96 ? C4D APR 400 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#