data_3IIE # _model_server_result.job_id io7e6fiuWAeYyYvwH2gyyA _model_server_result.datetime_utc '2024-11-09 02:45:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iie # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 3IIE # _exptl.entry_id 3IIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IIE _cell.length_a 121.46 _cell.length_b 121.46 _cell.length_c 86.923 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_764 -x+2,-x+y+1,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 182.19 105.187446 -28.974333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 6 A GLN 3 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 A OD2 ASP 153 A ASP 150 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A OE1 GLU 155 A GLU 152 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 A OE1 GLU 234 A GLU 231 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc5 G O HOH . A HOH 436 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc6 G O HOH . A HOH 440 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc7 G O HOH . A HOH 486 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc8 G O HOH . A HOH 492 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc9 G O HOH . A HOH 493 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 G O HOH . A HOH 495 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc11 G O HOH . A HOH 496 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc12 G O HOH . A HOH 497 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc13 B OD2 ASP 153 B ASP 150 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 B OE1 GLU 155 B GLU 152 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc15 B OE2 GLU 234 B GLU 231 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc16 H O HOH . B HOH 458 1_555 E MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 E MG MG . B MG 501 1_555 H O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc18 E MG MG . B MG 501 1_555 H O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IIE _atom_sites.fract_transf_matrix[1][1] 0.008233 _atom_sites.fract_transf_matrix[1][2] 0.004753 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 2 MG A 1 502 502 MG MG . E 2 MG B 1 501 501 MG MG . F 3 EDO B 1 601 601 EDO EDO . G 4 HOH A 1 399 2 HOH HOH . G 4 HOH A 2 400 6 HOH HOH . G 4 HOH A 3 401 7 HOH HOH . G 4 HOH A 4 402 9 HOH HOH . G 4 HOH A 5 403 14 HOH HOH . G 4 HOH A 6 404 15 HOH HOH . G 4 HOH A 7 405 16 HOH HOH . G 4 HOH A 8 406 23 HOH HOH . G 4 HOH A 9 407 24 HOH HOH . G 4 HOH A 10 408 25 HOH HOH . G 4 HOH A 11 409 26 HOH HOH . G 4 HOH A 12 410 29 HOH HOH . G 4 HOH A 13 411 32 HOH HOH . G 4 HOH A 14 412 33 HOH HOH . G 4 HOH A 15 413 38 HOH HOH . G 4 HOH A 16 414 39 HOH HOH . G 4 HOH A 17 415 40 HOH HOH . G 4 HOH A 18 416 44 HOH HOH . G 4 HOH A 19 417 45 HOH HOH . G 4 HOH A 20 418 48 HOH HOH . G 4 HOH A 21 419 49 HOH HOH . G 4 HOH A 22 420 50 HOH HOH . G 4 HOH A 23 421 53 HOH HOH . G 4 HOH A 24 422 58 HOH HOH . G 4 HOH A 25 423 60 HOH HOH . G 4 HOH A 26 424 62 HOH HOH . G 4 HOH A 27 425 64 HOH HOH . G 4 HOH A 28 426 72 HOH HOH . G 4 HOH A 29 427 73 HOH HOH . G 4 HOH A 30 428 74 HOH HOH . G 4 HOH A 31 429 76 HOH HOH . G 4 HOH A 32 430 77 HOH HOH . G 4 HOH A 33 431 80 HOH HOH . G 4 HOH A 34 432 82 HOH HOH . G 4 HOH A 35 433 83 HOH HOH . G 4 HOH A 36 434 84 HOH HOH . G 4 HOH A 37 435 89 HOH HOH . G 4 HOH A 38 436 90 HOH HOH . G 4 HOH A 39 437 92 HOH HOH . G 4 HOH A 40 438 94 HOH HOH . G 4 HOH A 41 439 98 HOH HOH . G 4 HOH A 42 440 101 HOH HOH . G 4 HOH A 43 441 102 HOH HOH . G 4 HOH A 44 442 106 HOH HOH . G 4 HOH A 45 443 107 HOH HOH . G 4 HOH A 46 444 110 HOH HOH . G 4 HOH A 47 445 111 HOH HOH . G 4 HOH A 48 446 115 HOH HOH . G 4 HOH A 49 447 118 HOH HOH . G 4 HOH A 50 448 120 HOH HOH . G 4 HOH A 51 449 121 HOH HOH . G 4 HOH A 52 450 124 HOH HOH . G 4 HOH A 53 451 125 HOH HOH . G 4 HOH A 54 452 126 HOH HOH . G 4 HOH A 55 453 127 HOH HOH . G 4 HOH A 56 454 128 HOH HOH . G 4 HOH A 57 455 131 HOH HOH . G 4 HOH A 58 456 135 HOH HOH . G 4 HOH A 59 457 137 HOH HOH . G 4 HOH A 60 458 139 HOH HOH . G 4 HOH A 61 459 141 HOH HOH . G 4 HOH A 62 460 142 HOH HOH . G 4 HOH A 63 461 143 HOH HOH . G 4 HOH A 64 462 144 HOH HOH . G 4 HOH A 65 463 146 HOH HOH . G 4 HOH A 66 464 149 HOH HOH . G 4 HOH A 67 465 153 HOH HOH . G 4 HOH A 68 466 158 HOH HOH . G 4 HOH A 69 467 159 HOH HOH . G 4 HOH A 70 468 160 HOH HOH . G 4 HOH A 71 469 161 HOH HOH . G 4 HOH A 72 470 162 HOH HOH . G 4 HOH A 73 471 163 HOH HOH . G 4 HOH A 74 472 168 HOH HOH . G 4 HOH A 75 473 170 HOH HOH . G 4 HOH A 76 474 173 HOH HOH . G 4 HOH A 77 475 70 HOH HOH . G 4 HOH A 78 476 177 HOH HOH . G 4 HOH A 79 477 178 HOH HOH . G 4 HOH A 80 478 179 HOH HOH . G 4 HOH A 81 480 183 HOH HOH . G 4 HOH A 82 481 186 HOH HOH . G 4 HOH A 83 482 187 HOH HOH . G 4 HOH A 84 483 190 HOH HOH . G 4 HOH A 85 484 191 HOH HOH . G 4 HOH A 86 485 193 HOH HOH . G 4 HOH A 87 486 195 HOH HOH . G 4 HOH A 88 487 196 HOH HOH . G 4 HOH A 89 488 197 HOH HOH . G 4 HOH A 90 489 199 HOH HOH . G 4 HOH A 91 490 203 HOH HOH . G 4 HOH A 92 491 204 HOH HOH . G 4 HOH A 93 492 205 HOH HOH . G 4 HOH A 94 493 206 HOH HOH . G 4 HOH A 95 494 208 HOH HOH . G 4 HOH A 96 495 211 HOH HOH . G 4 HOH A 97 496 212 HOH HOH . G 4 HOH A 98 497 214 HOH HOH . G 4 HOH A 99 498 215 HOH HOH . G 4 HOH A 100 499 217 HOH HOH . G 4 HOH A 101 500 218 HOH HOH . G 4 HOH A 102 503 219 HOH HOH . G 4 HOH A 103 504 220 HOH HOH . G 4 HOH A 104 505 221 HOH HOH . G 4 HOH A 105 506 222 HOH HOH . G 4 HOH A 106 507 223 HOH HOH . G 4 HOH A 107 508 225 HOH HOH . G 4 HOH A 108 509 226 HOH HOH . H 4 HOH B 1 399 1 HOH HOH . H 4 HOH B 2 400 3 HOH HOH . H 4 HOH B 3 401 4 HOH HOH . H 4 HOH B 4 402 5 HOH HOH . H 4 HOH B 5 403 8 HOH HOH . H 4 HOH B 6 404 10 HOH HOH . H 4 HOH B 7 405 11 HOH HOH . H 4 HOH B 8 406 12 HOH HOH . H 4 HOH B 9 407 13 HOH HOH . H 4 HOH B 10 408 17 HOH HOH . H 4 HOH B 11 409 18 HOH HOH . H 4 HOH B 12 410 19 HOH HOH . H 4 HOH B 13 411 20 HOH HOH . H 4 HOH B 14 412 21 HOH HOH . H 4 HOH B 15 413 22 HOH HOH . H 4 HOH B 16 414 27 HOH HOH . H 4 HOH B 17 415 28 HOH HOH . H 4 HOH B 18 416 30 HOH HOH . H 4 HOH B 19 417 31 HOH HOH . H 4 HOH B 20 418 34 HOH HOH . H 4 HOH B 21 419 35 HOH HOH . H 4 HOH B 22 420 36 HOH HOH . H 4 HOH B 23 421 37 HOH HOH . H 4 HOH B 24 422 41 HOH HOH . H 4 HOH B 25 423 42 HOH HOH . H 4 HOH B 26 424 43 HOH HOH . H 4 HOH B 27 425 46 HOH HOH . H 4 HOH B 28 426 47 HOH HOH . H 4 HOH B 29 427 51 HOH HOH . H 4 HOH B 30 428 52 HOH HOH . H 4 HOH B 31 429 54 HOH HOH . H 4 HOH B 32 430 55 HOH HOH . H 4 HOH B 33 431 56 HOH HOH . H 4 HOH B 34 432 57 HOH HOH . H 4 HOH B 35 433 59 HOH HOH . H 4 HOH B 36 434 61 HOH HOH . H 4 HOH B 37 435 63 HOH HOH . H 4 HOH B 38 436 65 HOH HOH . H 4 HOH B 39 437 66 HOH HOH . H 4 HOH B 40 438 67 HOH HOH . H 4 HOH B 41 439 68 HOH HOH . H 4 HOH B 42 440 69 HOH HOH . H 4 HOH B 43 442 71 HOH HOH . H 4 HOH B 44 443 75 HOH HOH . H 4 HOH B 45 444 78 HOH HOH . H 4 HOH B 46 445 79 HOH HOH . H 4 HOH B 47 446 81 HOH HOH . H 4 HOH B 48 447 85 HOH HOH . H 4 HOH B 49 448 86 HOH HOH . H 4 HOH B 50 449 87 HOH HOH . H 4 HOH B 51 450 88 HOH HOH . H 4 HOH B 52 451 91 HOH HOH . H 4 HOH B 53 452 93 HOH HOH . H 4 HOH B 54 453 95 HOH HOH . H 4 HOH B 55 454 96 HOH HOH . H 4 HOH B 56 455 97 HOH HOH . H 4 HOH B 57 456 99 HOH HOH . H 4 HOH B 58 457 100 HOH HOH . H 4 HOH B 59 458 103 HOH HOH . H 4 HOH B 60 459 104 HOH HOH . H 4 HOH B 61 460 105 HOH HOH . H 4 HOH B 62 461 108 HOH HOH . H 4 HOH B 63 462 109 HOH HOH . H 4 HOH B 64 463 112 HOH HOH . H 4 HOH B 65 464 113 HOH HOH . H 4 HOH B 66 465 114 HOH HOH . H 4 HOH B 67 466 116 HOH HOH . H 4 HOH B 68 467 117 HOH HOH . H 4 HOH B 69 468 119 HOH HOH . H 4 HOH B 70 469 122 HOH HOH . H 4 HOH B 71 470 123 HOH HOH . H 4 HOH B 72 471 129 HOH HOH . H 4 HOH B 73 472 130 HOH HOH . H 4 HOH B 74 473 132 HOH HOH . H 4 HOH B 75 474 133 HOH HOH . H 4 HOH B 76 475 176 HOH HOH . H 4 HOH B 77 476 136 HOH HOH . H 4 HOH B 78 477 138 HOH HOH . H 4 HOH B 79 478 140 HOH HOH . H 4 HOH B 80 479 181 HOH HOH . H 4 HOH B 81 480 147 HOH HOH . H 4 HOH B 82 481 148 HOH HOH . H 4 HOH B 83 482 150 HOH HOH . H 4 HOH B 84 483 151 HOH HOH . H 4 HOH B 85 484 152 HOH HOH . H 4 HOH B 86 485 154 HOH HOH . H 4 HOH B 87 486 155 HOH HOH . H 4 HOH B 88 487 156 HOH HOH . H 4 HOH B 89 488 157 HOH HOH . H 4 HOH B 90 489 164 HOH HOH . H 4 HOH B 91 490 165 HOH HOH . H 4 HOH B 92 491 166 HOH HOH . H 4 HOH B 93 492 167 HOH HOH . H 4 HOH B 94 493 169 HOH HOH . H 4 HOH B 95 494 171 HOH HOH . H 4 HOH B 96 495 172 HOH HOH . H 4 HOH B 97 496 174 HOH HOH . H 4 HOH B 98 497 175 HOH HOH . H 4 HOH B 99 498 180 HOH HOH . H 4 HOH B 100 499 182 HOH HOH . H 4 HOH B 101 500 184 HOH HOH . H 4 HOH B 102 502 185 HOH HOH . H 4 HOH B 103 503 188 HOH HOH . H 4 HOH B 104 504 189 HOH HOH . H 4 HOH B 105 505 192 HOH HOH . H 4 HOH B 106 506 194 HOH HOH . H 4 HOH B 107 507 198 HOH HOH . H 4 HOH B 108 508 200 HOH HOH . H 4 HOH B 109 509 201 HOH HOH . H 4 HOH B 110 510 202 HOH HOH . H 4 HOH B 111 511 207 HOH HOH . H 4 HOH B 112 512 209 HOH HOH . H 4 HOH B 113 513 210 HOH HOH . H 4 HOH B 114 514 213 HOH HOH . H 4 HOH B 115 515 216 HOH HOH . H 4 HOH B 116 516 224 HOH HOH . H 4 HOH B 117 517 227 HOH HOH . H 4 HOH B 118 518 134 HOH HOH . H 4 HOH B 119 519 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 93.097 _atom_site.Cartn_y 69.116 _atom_site.Cartn_z 0.655 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #