data_3IIJ # _model_server_result.job_id sIBIPcs_CIdzINwgjgscZA _model_server_result.datetime_utc '2024-11-13 11:37:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":173}' # _entry.id 3IIJ # _exptl.entry_id 3IIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3IIJ _cell.length_a 99.144 _cell.length_b 99.144 _cell.length_c 57.838 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3IIJ _atom_sites.fract_transf_matrix[1][1] 0.010086 _atom_sites.fract_transf_matrix[1][2] 0.005823 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 173 1 ADP ADP . C 3 SO4 A 1 174 1 SO4 SO4 . D 3 SO4 A 1 175 2 SO4 SO4 . E 3 SO4 A 1 176 3 SO4 SO4 . F 3 SO4 A 1 177 4 SO4 SO4 . G 4 HOH A 1 178 178 HOH HOH . G 4 HOH A 2 179 179 HOH HOH . G 4 HOH A 3 180 180 HOH HOH . G 4 HOH A 4 181 181 HOH HOH . G 4 HOH A 5 182 182 HOH HOH . G 4 HOH A 6 183 183 HOH HOH . G 4 HOH A 7 184 184 HOH HOH . G 4 HOH A 8 185 185 HOH HOH . G 4 HOH A 9 186 186 HOH HOH . G 4 HOH A 10 187 187 HOH HOH . G 4 HOH A 11 188 188 HOH HOH . G 4 HOH A 12 189 189 HOH HOH . G 4 HOH A 13 190 190 HOH HOH . G 4 HOH A 14 191 1 HOH HOH . G 4 HOH A 15 192 2 HOH HOH . G 4 HOH A 16 193 3 HOH HOH . G 4 HOH A 17 194 4 HOH HOH . G 4 HOH A 18 195 5 HOH HOH . G 4 HOH A 19 196 6 HOH HOH . G 4 HOH A 20 197 7 HOH HOH . G 4 HOH A 21 198 8 HOH HOH . G 4 HOH A 22 199 9 HOH HOH . G 4 HOH A 23 200 10 HOH HOH . G 4 HOH A 24 201 11 HOH HOH . G 4 HOH A 25 202 12 HOH HOH . G 4 HOH A 26 203 13 HOH HOH . G 4 HOH A 27 204 14 HOH HOH . G 4 HOH A 28 205 15 HOH HOH . G 4 HOH A 29 206 16 HOH HOH . G 4 HOH A 30 207 17 HOH HOH . G 4 HOH A 31 208 18 HOH HOH . G 4 HOH A 32 209 19 HOH HOH . G 4 HOH A 33 210 20 HOH HOH . G 4 HOH A 34 211 21 HOH HOH . G 4 HOH A 35 212 22 HOH HOH . G 4 HOH A 36 213 23 HOH HOH . G 4 HOH A 37 214 24 HOH HOH . G 4 HOH A 38 215 25 HOH HOH . G 4 HOH A 39 216 26 HOH HOH . G 4 HOH A 40 217 27 HOH HOH . G 4 HOH A 41 218 28 HOH HOH . G 4 HOH A 42 219 29 HOH HOH . G 4 HOH A 43 220 30 HOH HOH . G 4 HOH A 44 221 31 HOH HOH . G 4 HOH A 45 222 32 HOH HOH . G 4 HOH A 46 223 33 HOH HOH . G 4 HOH A 47 224 34 HOH HOH . G 4 HOH A 48 225 35 HOH HOH . G 4 HOH A 49 226 36 HOH HOH . G 4 HOH A 50 227 37 HOH HOH . G 4 HOH A 51 228 38 HOH HOH . G 4 HOH A 52 229 39 HOH HOH . G 4 HOH A 53 230 40 HOH HOH . G 4 HOH A 54 231 41 HOH HOH . G 4 HOH A 55 232 42 HOH HOH . G 4 HOH A 56 233 43 HOH HOH . G 4 HOH A 57 234 44 HOH HOH . G 4 HOH A 58 235 45 HOH HOH . G 4 HOH A 59 236 46 HOH HOH . G 4 HOH A 60 237 47 HOH HOH . G 4 HOH A 61 238 48 HOH HOH . G 4 HOH A 62 239 49 HOH HOH . G 4 HOH A 63 240 50 HOH HOH . G 4 HOH A 64 241 51 HOH HOH . G 4 HOH A 65 242 52 HOH HOH . G 4 HOH A 66 243 53 HOH HOH . G 4 HOH A 67 244 54 HOH HOH . G 4 HOH A 68 245 55 HOH HOH . G 4 HOH A 69 246 56 HOH HOH . G 4 HOH A 70 247 57 HOH HOH . G 4 HOH A 71 248 58 HOH HOH . G 4 HOH A 72 249 59 HOH HOH . G 4 HOH A 73 250 60 HOH HOH . G 4 HOH A 74 251 61 HOH HOH . G 4 HOH A 75 252 62 HOH HOH . G 4 HOH A 76 253 63 HOH HOH . G 4 HOH A 77 254 64 HOH HOH . G 4 HOH A 78 255 65 HOH HOH . G 4 HOH A 79 256 66 HOH HOH . G 4 HOH A 80 257 67 HOH HOH . G 4 HOH A 81 258 68 HOH HOH . G 4 HOH A 82 259 69 HOH HOH . G 4 HOH A 83 260 70 HOH HOH . G 4 HOH A 84 261 71 HOH HOH . G 4 HOH A 85 262 72 HOH HOH . G 4 HOH A 86 263 73 HOH HOH . G 4 HOH A 87 264 74 HOH HOH . G 4 HOH A 88 265 75 HOH HOH . G 4 HOH A 89 266 76 HOH HOH . G 4 HOH A 90 267 77 HOH HOH . G 4 HOH A 91 268 78 HOH HOH . G 4 HOH A 92 269 79 HOH HOH . G 4 HOH A 93 270 80 HOH HOH . G 4 HOH A 94 271 81 HOH HOH . G 4 HOH A 95 272 82 HOH HOH . G 4 HOH A 96 273 83 HOH HOH . G 4 HOH A 97 274 84 HOH HOH . G 4 HOH A 98 275 85 HOH HOH . G 4 HOH A 99 276 86 HOH HOH . G 4 HOH A 100 277 87 HOH HOH . G 4 HOH A 101 278 88 HOH HOH . G 4 HOH A 102 279 89 HOH HOH . G 4 HOH A 103 280 90 HOH HOH . G 4 HOH A 104 281 91 HOH HOH . G 4 HOH A 105 282 92 HOH HOH . G 4 HOH A 106 283 93 HOH HOH . G 4 HOH A 107 284 94 HOH HOH . G 4 HOH A 108 285 95 HOH HOH . G 4 HOH A 109 286 96 HOH HOH . G 4 HOH A 110 287 97 HOH HOH . G 4 HOH A 111 288 98 HOH HOH . G 4 HOH A 112 289 99 HOH HOH . G 4 HOH A 113 290 100 HOH HOH . G 4 HOH A 114 291 101 HOH HOH . G 4 HOH A 115 292 102 HOH HOH . G 4 HOH A 116 293 103 HOH HOH . G 4 HOH A 117 294 104 HOH HOH . G 4 HOH A 118 295 105 HOH HOH . G 4 HOH A 119 296 106 HOH HOH . G 4 HOH A 120 297 107 HOH HOH . G 4 HOH A 121 298 108 HOH HOH . G 4 HOH A 122 299 109 HOH HOH . G 4 HOH A 123 300 110 HOH HOH . G 4 HOH A 124 301 111 HOH HOH . G 4 HOH A 125 302 112 HOH HOH . G 4 HOH A 126 303 113 HOH HOH . G 4 HOH A 127 304 114 HOH HOH . G 4 HOH A 128 305 115 HOH HOH . G 4 HOH A 129 306 116 HOH HOH . G 4 HOH A 130 307 117 HOH HOH . G 4 HOH A 131 308 118 HOH HOH . G 4 HOH A 132 309 119 HOH HOH . G 4 HOH A 133 310 120 HOH HOH . G 4 HOH A 134 311 121 HOH HOH . G 4 HOH A 135 312 122 HOH HOH . G 4 HOH A 136 313 123 HOH HOH . G 4 HOH A 137 314 124 HOH HOH . G 4 HOH A 138 315 125 HOH HOH . G 4 HOH A 139 316 126 HOH HOH . G 4 HOH A 140 317 127 HOH HOH . G 4 HOH A 141 318 128 HOH HOH . G 4 HOH A 142 319 129 HOH HOH . G 4 HOH A 143 320 130 HOH HOH . G 4 HOH A 144 321 131 HOH HOH . G 4 HOH A 145 322 132 HOH HOH . G 4 HOH A 146 323 133 HOH HOH . G 4 HOH A 147 324 134 HOH HOH . G 4 HOH A 148 325 135 HOH HOH . G 4 HOH A 149 326 136 HOH HOH . G 4 HOH A 150 327 137 HOH HOH . G 4 HOH A 151 328 138 HOH HOH . G 4 HOH A 152 329 139 HOH HOH . G 4 HOH A 153 330 140 HOH HOH . G 4 HOH A 154 331 141 HOH HOH . G 4 HOH A 155 332 142 HOH HOH . G 4 HOH A 156 333 143 HOH HOH . G 4 HOH A 157 334 144 HOH HOH . G 4 HOH A 158 335 145 HOH HOH . G 4 HOH A 159 336 146 HOH HOH . G 4 HOH A 160 337 147 HOH HOH . G 4 HOH A 161 338 148 HOH HOH . G 4 HOH A 162 339 149 HOH HOH . G 4 HOH A 163 340 150 HOH HOH . G 4 HOH A 164 341 151 HOH HOH . G 4 HOH A 165 342 152 HOH HOH . G 4 HOH A 166 343 153 HOH HOH . G 4 HOH A 167 344 154 HOH HOH . G 4 HOH A 168 345 155 HOH HOH . G 4 HOH A 169 346 156 HOH HOH . G 4 HOH A 170 347 157 HOH HOH . G 4 HOH A 171 348 158 HOH HOH . G 4 HOH A 172 349 159 HOH HOH . G 4 HOH A 173 350 160 HOH HOH . G 4 HOH A 174 351 161 HOH HOH . G 4 HOH A 175 352 162 HOH HOH . G 4 HOH A 176 353 163 HOH HOH . G 4 HOH A 177 354 164 HOH HOH . G 4 HOH A 178 355 165 HOH HOH . G 4 HOH A 179 356 166 HOH HOH . G 4 HOH A 180 357 167 HOH HOH . G 4 HOH A 181 358 168 HOH HOH . G 4 HOH A 182 359 169 HOH HOH . G 4 HOH A 183 360 170 HOH HOH . G 4 HOH A 184 361 171 HOH HOH . G 4 HOH A 185 362 172 HOH HOH . G 4 HOH A 186 363 173 HOH HOH . G 4 HOH A 187 364 174 HOH HOH . G 4 HOH A 188 365 175 HOH HOH . G 4 HOH A 189 366 176 HOH HOH . G 4 HOH A 190 367 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 37.042 -53.866 -8.064 1 24.16 ? PB ADP 173 A 1 HETATM 2 O O1B ADP . . . B 2 37.727 -53.868 -6.705 1 23.37 ? O1B ADP 173 A 1 HETATM 3 O O2B ADP . . . B 2 37.611 -52.841 -9 1 25.43 ? O2B ADP 173 A 1 HETATM 4 O O3B ADP . . . B 2 35.537 -53.787 -7.971 1 24.62 ? O3B ADP 173 A 1 HETATM 5 P PA ADP . . . B 2 36.505 -56.327 -9.572 1 28.11 ? PA ADP 173 A 1 HETATM 6 O O1A ADP . . . B 2 35.456 -56.978 -8.72 1 27.28 ? O1A ADP 173 A 1 HETATM 7 O O2A ADP . . . B 2 36.106 -55.596 -10.826 1 28.71 ? O2A ADP 173 A 1 HETATM 8 O O3A ADP . . . B 2 37.425 -55.318 -8.658 1 25.18 ? O3A ADP 173 A 1 HETATM 9 O O5' ADP . . . B 2 37.572 -57.484 -9.914 1 28.21 ? O5' ADP 173 A 1 HETATM 10 C C5' ADP . . . B 2 38.679 -57.212 -10.785 1 30.54 ? C5' ADP 173 A 1 HETATM 11 C C4' ADP . . . B 2 39.07 -58.482 -11.544 1 31.74 ? C4' ADP 173 A 1 HETATM 12 O O4' ADP . . . B 2 39.637 -59.429 -10.643 1 31.86 ? O4' ADP 173 A 1 HETATM 13 C C3' ADP . . . B 2 37.903 -59.2 -12.213 1 33.19 ? C3' ADP 173 A 1 HETATM 14 O O3' ADP . . . B 2 38.415 -59.791 -13.417 1 34.83 ? O3' ADP 173 A 1 HETATM 15 C C2' ADP . . . B 2 37.522 -60.3 -11.248 1 33.31 ? C2' ADP 173 A 1 HETATM 16 O O2' ADP . . . B 2 36.946 -61.443 -11.899 1 34.63 ? O2' ADP 173 A 1 HETATM 17 C C1' ADP . . . B 2 38.86 -60.634 -10.617 1 31.89 ? C1' ADP 173 A 1 HETATM 18 N N9 ADP . . . B 2 38.783 -61.042 -9.207 1 31.85 ? N9 ADP 173 A 1 HETATM 19 C C8 ADP . . . B 2 38.161 -60.404 -8.193 1 31.27 ? C8 ADP 173 A 1 HETATM 20 N N7 ADP . . . B 2 38.34 -61.066 -7.029 1 30.54 ? N7 ADP 173 A 1 HETATM 21 C C5 ADP . . . B 2 39.114 -62.141 -7.301 1 31.58 ? C5 ADP 173 A 1 HETATM 22 C C6 ADP . . . B 2 39.692 -63.257 -6.536 1 32.45 ? C6 ADP 173 A 1 HETATM 23 N N6 ADP . . . B 2 39.489 -63.362 -5.2 1 33 ? N6 ADP 173 A 1 HETATM 24 N N1 ADP . . . B 2 40.436 -64.165 -7.227 1 32.52 ? N1 ADP 173 A 1 HETATM 25 C C2 ADP . . . B 2 40.662 -64.069 -8.549 1 31.35 ? C2 ADP 173 A 1 HETATM 26 N N3 ADP . . . B 2 40.168 -63.078 -9.309 1 32.59 ? N3 ADP 173 A 1 HETATM 27 C C4 ADP . . . B 2 39.403 -62.112 -8.736 1 31.58 ? C4 ADP 173 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #