data_3IIT # _model_server_result.job_id 0_JZtHSmemTGdXBhTjn6uw _model_server_result.datetime_utc '2024-11-22 13:01:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3iit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":262}' # _entry.id 3IIT # _exptl.entry_id 3IIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IIT _cell.length_a 56.055 _cell.length_b 72.179 _cell.length_c 79.238 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 48 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf6 B SG CYS 5 B CYS 89 1_555 B SG CYS 16 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf7 B SG CYS 12 B CYS 96 1_555 B SG CYS 25 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf8 B SG CYS 27 B CYS 111 1_555 B SG CYS 40 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 F O HOH . A HOH 15 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc2 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 A O TYR 173 A TYR 185 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 A O ASP 174 A ASP 185 1_555 D CA CA . A CA 262 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc8 A O ARG 211 A ARG 222 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 A O LYS 214 A LYS 224 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 C CA CA . A CA 261 1_555 F O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc11 D CA CA . A CA 262 1_555 F O HOH . A HOH 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc12 D CA CA . A CA 262 1_555 F O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IIT _atom_sites.fract_transf_matrix[1][1] 0.01784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 261 261 CA CA . D 3 CA A 1 262 262 CA CA . E 4 D14 A 1 700 700 D14 D11 . F 5 HOH A 1 3 3 HOH HOH . F 5 HOH A 2 4 4 HOH HOH . F 5 HOH A 3 5 5 HOH HOH . F 5 HOH A 4 6 6 HOH HOH . F 5 HOH A 5 7 7 HOH HOH . F 5 HOH A 6 8 8 HOH HOH . F 5 HOH A 7 9 9 HOH HOH . F 5 HOH A 8 10 10 HOH HOH . F 5 HOH A 9 11 11 HOH HOH . F 5 HOH A 10 12 12 HOH HOH . F 5 HOH A 11 13 13 HOH HOH . F 5 HOH A 12 14 14 HOH HOH . F 5 HOH A 13 15 15 HOH HOH . F 5 HOH A 14 219 219 HOH HOH . F 5 HOH A 15 244 16 HOH HOH . F 5 HOH A 16 245 17 HOH HOH . F 5 HOH A 17 246 18 HOH HOH . F 5 HOH A 18 247 20 HOH HOH . F 5 HOH A 19 248 21 HOH HOH . F 5 HOH A 20 249 22 HOH HOH . F 5 HOH A 21 250 23 HOH HOH . F 5 HOH A 22 251 24 HOH HOH . F 5 HOH A 23 252 26 HOH HOH . F 5 HOH A 24 253 27 HOH HOH . F 5 HOH A 25 254 28 HOH HOH . F 5 HOH A 26 255 29 HOH HOH . F 5 HOH A 27 256 30 HOH HOH . F 5 HOH A 28 257 31 HOH HOH . F 5 HOH A 29 258 69 HOH HOH . F 5 HOH A 30 259 33 HOH HOH . F 5 HOH A 31 260 34 HOH HOH . F 5 HOH A 32 263 35 HOH HOH . F 5 HOH A 33 264 36 HOH HOH . F 5 HOH A 34 265 37 HOH HOH . F 5 HOH A 35 266 38 HOH HOH . F 5 HOH A 36 267 39 HOH HOH . F 5 HOH A 37 268 40 HOH HOH . F 5 HOH A 38 269 41 HOH HOH . F 5 HOH A 39 270 42 HOH HOH . F 5 HOH A 40 271 43 HOH HOH . F 5 HOH A 41 272 44 HOH HOH . F 5 HOH A 42 273 46 HOH HOH . F 5 HOH A 43 274 47 HOH HOH . F 5 HOH A 44 275 48 HOH HOH . F 5 HOH A 45 276 50 HOH HOH . F 5 HOH A 46 277 52 HOH HOH . F 5 HOH A 47 278 54 HOH HOH . F 5 HOH A 48 279 55 HOH HOH . F 5 HOH A 49 280 56 HOH HOH . F 5 HOH A 50 281 58 HOH HOH . F 5 HOH A 51 282 59 HOH HOH . F 5 HOH A 52 283 60 HOH HOH . F 5 HOH A 53 284 62 HOH HOH . F 5 HOH A 54 285 65 HOH HOH . F 5 HOH A 55 286 66 HOH HOH . F 5 HOH A 56 287 68 HOH HOH . F 5 HOH A 57 288 70 HOH HOH . F 5 HOH A 58 289 72 HOH HOH . F 5 HOH A 59 290 73 HOH HOH . F 5 HOH A 60 291 74 HOH HOH . F 5 HOH A 61 292 75 HOH HOH . F 5 HOH A 62 293 76 HOH HOH . F 5 HOH A 63 294 77 HOH HOH . F 5 HOH A 64 295 78 HOH HOH . F 5 HOH A 65 296 82 HOH HOH . F 5 HOH A 66 297 83 HOH HOH . F 5 HOH A 67 298 84 HOH HOH . F 5 HOH A 68 299 85 HOH HOH . F 5 HOH A 69 300 86 HOH HOH . F 5 HOH A 70 301 87 HOH HOH . F 5 HOH A 71 302 89 HOH HOH . F 5 HOH A 72 303 91 HOH HOH . F 5 HOH A 73 304 94 HOH HOH . F 5 HOH A 74 305 96 HOH HOH . F 5 HOH A 75 306 100 HOH HOH . F 5 HOH A 76 307 101 HOH HOH . F 5 HOH A 77 308 102 HOH HOH . F 5 HOH A 78 309 105 HOH HOH . F 5 HOH A 79 310 107 HOH HOH . F 5 HOH A 80 311 108 HOH HOH . F 5 HOH A 81 312 110 HOH HOH . F 5 HOH A 82 313 111 HOH HOH . F 5 HOH A 83 314 112 HOH HOH . F 5 HOH A 84 315 114 HOH HOH . F 5 HOH A 85 316 115 HOH HOH . F 5 HOH A 86 317 116 HOH HOH . F 5 HOH A 87 318 120 HOH HOH . F 5 HOH A 88 319 121 HOH HOH . F 5 HOH A 89 320 123 HOH HOH . F 5 HOH A 90 321 125 HOH HOH . F 5 HOH A 91 322 126 HOH HOH . F 5 HOH A 92 323 129 HOH HOH . F 5 HOH A 93 324 130 HOH HOH . F 5 HOH A 94 325 134 HOH HOH . F 5 HOH A 95 326 136 HOH HOH . F 5 HOH A 96 327 138 HOH HOH . F 5 HOH A 97 328 139 HOH HOH . F 5 HOH A 98 329 140 HOH HOH . F 5 HOH A 99 330 142 HOH HOH . F 5 HOH A 100 331 143 HOH HOH . F 5 HOH A 101 332 144 HOH HOH . F 5 HOH A 102 333 145 HOH HOH . F 5 HOH A 103 335 148 HOH HOH . F 5 HOH A 104 336 149 HOH HOH . F 5 HOH A 105 337 152 HOH HOH . F 5 HOH A 106 338 153 HOH HOH . F 5 HOH A 107 339 154 HOH HOH . F 5 HOH A 108 340 155 HOH HOH . F 5 HOH A 109 341 159 HOH HOH . F 5 HOH A 110 342 161 HOH HOH . F 5 HOH A 111 343 165 HOH HOH . F 5 HOH A 112 344 166 HOH HOH . F 5 HOH A 113 345 167 HOH HOH . F 5 HOH A 114 346 168 HOH HOH . F 5 HOH A 115 347 169 HOH HOH . F 5 HOH A 116 348 170 HOH HOH . F 5 HOH A 117 349 171 HOH HOH . F 5 HOH A 118 350 173 HOH HOH . F 5 HOH A 119 351 175 HOH HOH . F 5 HOH A 120 352 177 HOH HOH . F 5 HOH A 121 353 178 HOH HOH . F 5 HOH A 122 354 179 HOH HOH . F 5 HOH A 123 355 180 HOH HOH . F 5 HOH A 124 356 183 HOH HOH . F 5 HOH A 125 357 185 HOH HOH . F 5 HOH A 126 358 189 HOH HOH . F 5 HOH A 127 359 190 HOH HOH . F 5 HOH A 128 360 191 HOH HOH . F 5 HOH A 129 361 193 HOH HOH . F 5 HOH A 130 362 194 HOH HOH . F 5 HOH A 131 363 195 HOH HOH . F 5 HOH A 132 364 197 HOH HOH . F 5 HOH A 133 365 200 HOH HOH . F 5 HOH A 134 366 201 HOH HOH . F 5 HOH A 135 367 204 HOH HOH . F 5 HOH A 136 368 205 HOH HOH . F 5 HOH A 137 369 206 HOH HOH . F 5 HOH A 138 370 208 HOH HOH . F 5 HOH A 139 371 210 HOH HOH . F 5 HOH A 140 372 213 HOH HOH . F 5 HOH A 141 373 217 HOH HOH . F 5 HOH A 142 374 220 HOH HOH . F 5 HOH A 143 375 221 HOH HOH . F 5 HOH A 144 376 222 HOH HOH . F 5 HOH A 145 377 223 HOH HOH . F 5 HOH A 146 378 224 HOH HOH . F 5 HOH A 147 379 225 HOH HOH . F 5 HOH A 148 380 226 HOH HOH . F 5 HOH A 149 381 227 HOH HOH . G 5 HOH B 1 2 2 HOH HOH . G 5 HOH B 2 45 45 HOH HOH . G 5 HOH B 3 49 49 HOH HOH . G 5 HOH B 4 51 51 HOH HOH . G 5 HOH B 5 61 61 HOH HOH . G 5 HOH B 6 63 63 HOH HOH . G 5 HOH B 7 64 64 HOH HOH . G 5 HOH B 8 71 71 HOH HOH . G 5 HOH B 9 79 79 HOH HOH . G 5 HOH B 10 80 80 HOH HOH . G 5 HOH B 11 81 81 HOH HOH . G 5 HOH B 12 139 88 HOH HOH . G 5 HOH B 13 140 90 HOH HOH . G 5 HOH B 14 141 92 HOH HOH . G 5 HOH B 15 142 95 HOH HOH . G 5 HOH B 16 143 97 HOH HOH . G 5 HOH B 17 144 98 HOH HOH . G 5 HOH B 18 145 99 HOH HOH . G 5 HOH B 19 146 146 HOH HOH . G 5 HOH B 20 147 103 HOH HOH . G 5 HOH B 21 148 104 HOH HOH . G 5 HOH B 22 149 106 HOH HOH . G 5 HOH B 23 150 150 HOH HOH . G 5 HOH B 24 151 109 HOH HOH . G 5 HOH B 25 152 113 HOH HOH . G 5 HOH B 26 153 117 HOH HOH . G 5 HOH B 27 154 122 HOH HOH . G 5 HOH B 28 155 124 HOH HOH . G 5 HOH B 29 156 127 HOH HOH . G 5 HOH B 30 157 157 HOH HOH . G 5 HOH B 31 158 128 HOH HOH . G 5 HOH B 32 159 131 HOH HOH . G 5 HOH B 33 160 132 HOH HOH . G 5 HOH B 34 161 133 HOH HOH . G 5 HOH B 35 182 182 HOH HOH . G 5 HOH B 36 184 184 HOH HOH . G 5 HOH B 37 192 192 HOH HOH . G 5 HOH B 38 196 196 HOH HOH . G 5 HOH B 39 211 211 HOH HOH . G 5 HOH B 40 216 216 HOH HOH . G 5 HOH B 41 218 218 HOH HOH . G 5 HOH B 42 258 32 HOH HOH . G 5 HOH B 43 334 147 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.492 _atom_site.Cartn_y 1.346 _atom_site.Cartn_z 34.078 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 262 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #