data_3IJD # _model_server_result.job_id JSddB46MSk8j9qhr2ncZzQ _model_server_result.datetime_utc '2025-02-05 13:52:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ijd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":315}' # _entry.id 3IJD # _exptl.entry_id 3IJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 94.68 _cell.angle_beta 97.68 _cell.angle_gamma 90.57 _cell.entry_id 3IJD _cell.length_a 51.581 _cell.length_b 52.368 _cell.length_c 60.918 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,C,D,G 2 1 B,E,F,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 8.141097 5.051576 -60.159844 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C20 H25 N7 O6' _chem_comp.formula_weight 459.456 _chem_comp.id C2F _chem_comp.mon_nstd_flag . _chem_comp.name '5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 C2F doub 70 n y N1 C8A C2F sing 71 n y C2 NA2 C2F sing 72 n n C2 N3 C2F sing 73 n y NA2 HN21 C2F sing 74 n n NA2 HN22 C2F sing 75 n n N3 C4 C2F sing 76 n y N3 HN3 C2F sing 77 n n C4 O4 C2F doub 78 n n C4 C4A C2F sing 79 n y C4A N5 C2F sing 80 n n C4A C8A C2F doub 81 n y N5 C6 C2F sing 82 n n N5 C11 C2F sing 83 n n C6 C7 C2F sing 84 n n C6 C9 C2F sing 85 n n C6 H6 C2F sing 86 n n C7 N8 C2F sing 87 n n C7 H71 C2F sing 88 n n C7 H72 C2F sing 89 n n N8 C8A C2F sing 90 n n N8 HN8 C2F sing 91 n n C9 N10 C2F sing 92 n n C9 H91 C2F sing 93 n n C9 H92 C2F sing 94 n n N10 C15 C2F sing 95 n n N10 HN1 C2F sing 96 n n C11 H111 C2F sing 97 n n C11 H112 C2F sing 98 n n C11 H113 C2F sing 99 n n C12 C13 C2F doub 100 n y C12 C17 C2F sing 101 n y C12 C C2F sing 102 n n C13 C14 C2F sing 103 n y C13 H13 C2F sing 104 n n C14 C15 C2F doub 105 n y C14 H14 C2F sing 106 n n C15 C16 C2F sing 107 n y C16 C17 C2F doub 108 n y C16 H16 C2F sing 109 n n C17 H17 C2F sing 110 n n C O C2F doub 111 n n C N C2F sing 112 n n N CA C2F sing 113 n n N HN C2F sing 114 n n CA CB C2F sing 115 n n CA CT C2F sing 116 n n CA HA C2F sing 117 n n CB CG C2F sing 118 n n CB HB1 C2F sing 119 n n CB HB2 C2F sing 120 n n CG CD C2F sing 121 n n CG HG1 C2F sing 122 n n CG HG2 C2F sing 123 n n CD OE1 C2F doub 124 n n CD OE2 C2F sing 125 n n OE2 HOE2 C2F sing 126 n n CT O1 C2F doub 127 n n CT O2 C2F sing 128 n n O2 HO2 C2F sing 129 n n # _atom_sites.entry_id 3IJD _atom_sites.fract_transf_matrix[1][1] 0.019387 _atom_sites.fract_transf_matrix[1][2] 0.000194 _atom_sites.fract_transf_matrix[1][3] 0.002639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019097 _atom_sites.fract_transf_matrix[2][3] 0.001602 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C2F A 1 314 1 C2F C2F . D 2 C2F A 1 315 1 C2F C2F . E 2 C2F B 1 314 1 C2F C2F . F 2 C2F B 1 315 1 C2F C2F . G 3 HOH A 1 316 4 HOH HOH . G 3 HOH A 2 317 5 HOH HOH . G 3 HOH A 3 318 10 HOH HOH . G 3 HOH A 4 319 16 HOH HOH . G 3 HOH A 5 320 18 HOH HOH . G 3 HOH A 6 321 21 HOH HOH . G 3 HOH A 7 322 23 HOH HOH . G 3 HOH A 8 323 24 HOH HOH . G 3 HOH A 9 324 29 HOH HOH . G 3 HOH A 10 325 31 HOH HOH . G 3 HOH A 11 326 34 HOH HOH . G 3 HOH A 12 327 35 HOH HOH . G 3 HOH A 13 328 36 HOH HOH . G 3 HOH A 14 329 38 HOH HOH . G 3 HOH A 15 330 40 HOH HOH . G 3 HOH A 16 331 41 HOH HOH . G 3 HOH A 17 332 47 HOH HOH . G 3 HOH A 18 333 333 HOH HOH . G 3 HOH A 19 334 49 HOH HOH . G 3 HOH A 20 335 59 HOH HOH . G 3 HOH A 21 336 67 HOH HOH . G 3 HOH A 22 337 70 HOH HOH . G 3 HOH A 23 338 73 HOH HOH . G 3 HOH A 24 339 74 HOH HOH . G 3 HOH A 25 340 75 HOH HOH . G 3 HOH A 26 341 78 HOH HOH . G 3 HOH A 27 342 79 HOH HOH . G 3 HOH A 28 343 81 HOH HOH . G 3 HOH A 29 344 87 HOH HOH . G 3 HOH A 30 345 92 HOH HOH . G 3 HOH A 31 346 97 HOH HOH . G 3 HOH A 32 347 98 HOH HOH . G 3 HOH A 33 348 107 HOH HOH . G 3 HOH A 34 349 119 HOH HOH . G 3 HOH A 35 350 121 HOH HOH . G 3 HOH A 36 351 123 HOH HOH . G 3 HOH A 37 352 126 HOH HOH . G 3 HOH A 38 353 129 HOH HOH . G 3 HOH A 39 354 130 HOH HOH . G 3 HOH A 40 355 134 HOH HOH . G 3 HOH A 41 356 138 HOH HOH . G 3 HOH A 42 357 140 HOH HOH . G 3 HOH A 43 358 186 HOH HOH . G 3 HOH A 44 359 199 HOH HOH . G 3 HOH A 45 360 273 HOH HOH . G 3 HOH A 46 361 292 HOH HOH . G 3 HOH A 47 395 395 HOH HOH . G 3 HOH A 48 401 401 HOH HOH . G 3 HOH A 49 408 408 HOH HOH . G 3 HOH A 50 409 409 HOH HOH . G 3 HOH A 51 410 410 HOH HOH . G 3 HOH A 52 411 411 HOH HOH . G 3 HOH A 53 416 416 HOH HOH . G 3 HOH A 54 417 417 HOH HOH . G 3 HOH A 55 418 418 HOH HOH . G 3 HOH A 56 423 423 HOH HOH . H 3 HOH B 1 316 2 HOH HOH . H 3 HOH B 2 317 317 HOH HOH . H 3 HOH B 3 318 8 HOH HOH . H 3 HOH B 4 319 11 HOH HOH . H 3 HOH B 5 320 12 HOH HOH . H 3 HOH B 6 321 14 HOH HOH . H 3 HOH B 7 322 26 HOH HOH . H 3 HOH B 8 323 33 HOH HOH . H 3 HOH B 9 324 39 HOH HOH . H 3 HOH B 10 325 42 HOH HOH . H 3 HOH B 11 326 44 HOH HOH . H 3 HOH B 12 327 52 HOH HOH . H 3 HOH B 13 328 55 HOH HOH . H 3 HOH B 14 329 56 HOH HOH . H 3 HOH B 15 330 57 HOH HOH . H 3 HOH B 16 331 60 HOH HOH . H 3 HOH B 17 332 65 HOH HOH . H 3 HOH B 18 333 68 HOH HOH . H 3 HOH B 19 334 76 HOH HOH . H 3 HOH B 20 335 77 HOH HOH . H 3 HOH B 21 336 84 HOH HOH . H 3 HOH B 22 337 85 HOH HOH . H 3 HOH B 23 338 86 HOH HOH . H 3 HOH B 24 339 90 HOH HOH . H 3 HOH B 25 340 91 HOH HOH . H 3 HOH B 26 341 100 HOH HOH . H 3 HOH B 27 342 108 HOH HOH . H 3 HOH B 28 343 117 HOH HOH . H 3 HOH B 29 344 344 HOH HOH . H 3 HOH B 30 345 125 HOH HOH . H 3 HOH B 31 346 127 HOH HOH . H 3 HOH B 32 347 131 HOH HOH . H 3 HOH B 33 348 136 HOH HOH . H 3 HOH B 34 349 146 HOH HOH . H 3 HOH B 35 350 169 HOH HOH . H 3 HOH B 36 351 177 HOH HOH . H 3 HOH B 37 352 210 HOH HOH . H 3 HOH B 38 353 222 HOH HOH . H 3 HOH B 39 354 227 HOH HOH . H 3 HOH B 40 355 228 HOH HOH . H 3 HOH B 41 356 262 HOH HOH . H 3 HOH B 42 357 287 HOH HOH . H 3 HOH B 43 358 296 HOH HOH . H 3 HOH B 44 394 394 HOH HOH . H 3 HOH B 45 399 399 HOH HOH . H 3 HOH B 46 412 412 HOH HOH . H 3 HOH B 47 413 413 HOH HOH . H 3 HOH B 48 414 414 HOH HOH . H 3 HOH B 49 415 415 HOH HOH . H 3 HOH B 50 419 419 HOH HOH . H 3 HOH B 51 420 420 HOH HOH . H 3 HOH B 52 421 421 HOH HOH . H 3 HOH B 53 422 422 HOH HOH . H 3 HOH B 54 424 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 C2F . . . D 2 12.105 6.37 -10.801 1 42.76 ? N1 C2F 315 A 1 HETATM 2 C C2 C2F . . . D 2 13.173 6.742 -11.544 1 46.23 ? C2 C2F 315 A 1 HETATM 3 N NA2 C2F . . . D 2 13.176 6.47 -12.876 1 47.7 ? NA2 C2F 315 A 1 HETATM 4 N N3 C2F . . . D 2 14.244 7.39 -11.025 1 46.44 ? N3 C2F 315 A 1 HETATM 5 C C4 C2F . . . D 2 14.34 7.715 -9.728 1 45.59 ? C4 C2F 315 A 1 HETATM 6 O O4 C2F . . . D 2 15.343 8.314 -9.29 1 45.2 ? O4 C2F 315 A 1 HETATM 7 C C4A C2F . . . D 2 13.213 7.337 -8.846 1 43.59 ? C4A C2F 315 A 1 HETATM 8 N N5 C2F . . . D 2 13.134 7.572 -7.477 1 42.24 ? N5 C2F 315 A 1 HETATM 9 C C6 C2F . . . D 2 11.832 7.885 -6.905 1 42.49 ? C6 C2F 315 A 1 HETATM 10 C C7 C2F . . . D 2 10.979 6.672 -7.289 1 42.21 ? C7 C2F 315 A 1 HETATM 11 N N8 C2F . . . D 2 11.04 6.294 -8.701 1 41.23 ? N8 C2F 315 A 1 HETATM 12 C C8A C2F . . . D 2 12.087 6.621 -9.475 1 42.45 ? C8A C2F 315 A 1 HETATM 13 C C9 C2F . . . D 2 11.245 9.166 -7.498 1 42.65 ? C9 C2F 315 A 1 HETATM 14 N N10 C2F . . . D 2 12.213 10.253 -7.474 1 43.93 ? N10 C2F 315 A 1 HETATM 15 C C11 C2F . . . D 2 14.282 7.371 -6.597 1 43.84 ? C11 C2F 315 A 1 HETATM 16 C C12 C2F . . . D 2 11.444 14.108 -8.889 1 50.05 ? C12 C2F 315 A 1 HETATM 17 C C13 C2F . . . D 2 10.398 13.17 -8.775 1 49.94 ? C13 C2F 315 A 1 HETATM 18 C C14 C2F . . . D 2 10.636 11.882 -8.292 1 47.2 ? C14 C2F 315 A 1 HETATM 19 C C15 C2F . . . D 2 11.926 11.503 -7.918 1 45.54 ? C15 C2F 315 A 1 HETATM 20 C C16 C2F . . . D 2 12.966 12.424 -8.048 1 46.68 ? C16 C2F 315 A 1 HETATM 21 C C17 C2F . . . D 2 12.731 13.714 -8.532 1 48.27 ? C17 C2F 315 A 1 HETATM 22 C C C2F . . . D 2 11.2 15.501 -9.434 1 50.45 ? C C2F 315 A 1 HETATM 23 O O C2F . . . D 2 12.16 16.147 -9.823 1 50.01 ? O C2F 315 A 1 HETATM 24 N N C2F . . . D 2 9.953 15.959 -9.601 1 51.1 ? N C2F 315 A 1 HETATM 25 C CA C2F . . . D 2 9.651 17.121 -10.434 1 52.01 ? CA C2F 315 A 1 HETATM 26 C CB C2F . . . D 2 9.981 16.778 -11.916 1 52.37 ? CB C2F 315 A 1 HETATM 27 C CG C2F . . . D 2 8.941 17.031 -13.029 1 53.4 ? CG C2F 315 A 1 HETATM 28 C CD C2F . . . D 2 9.387 16.43 -14.368 1 55.28 ? CD C2F 315 A 1 HETATM 29 O OE1 C2F . . . D 2 8.547 16.304 -15.307 1 58.82 ? OE1 C2F 315 A 1 HETATM 30 O OE2 C2F . . . D 2 10.569 16.054 -14.543 1 54.48 ? OE2 C2F 315 A 1 HETATM 31 C CT C2F . . . D 2 8.233 17.544 -10.15 1 52.04 ? CT C2F 315 A 1 HETATM 32 O O1 C2F . . . D 2 7.595 16.891 -9.298 1 51 ? O1 C2F 315 A 1 HETATM 33 O O2 C2F . . . D 2 7.721 18.528 -10.737 1 53.47 ? O2 C2F 315 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #