data_3IJX
#
_model_server_result.job_id            OBDYLg2nWMO5eflAd2wvyw 
_model_server_result.datetime_utc      '2024-11-27 21:13:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ijx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    3IJX 
#
_exptl.entry_id    3IJX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3IJX 
_cell.length_a            47.404 
_cell.length_b            114.35 
_cell.length_c            162.868 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3IJX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,O,P 1 1 
C,J,K,L,M,N,Q 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_544 x,-y-1,-z-1 1 0 0 0 -1 0 0 0 -1 0 -114.35 -162.868 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 B CYS 206 1_555 A SG CYS 258 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 203 D CYS 206 1_555 B SG CYS 258 D CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 C SG CYS 203 H CYS 206 1_555 C SG CYS 258 H CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc1 A NE2 HIS 20 B HIS 23 1_555 F ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
metalc ? metalc2 A NE2 HIS 43 B HIS 46 1_555 M ZN ZN . H ZN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc3 I ZN ZN . D ZN 1 1_555 B OE1 GLU 39 D GLU 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc4 I ZN ZN . D ZN 1 1_555 B NE2 HIS 43 D HIS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc5 M ZN ZN . H ZN 3 1_555 C OE1 GLU 163 H GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                GLU 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'GLUTAMIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLU sing 102 n n 
N H GLU sing 103 n n 
N H2 GLU sing 104 n n 
CA C GLU sing 105 n n 
CA CB GLU sing 106 n n 
CA HA GLU sing 107 n n 
C O GLU doub 108 n n 
C OXT GLU sing 109 n n 
CB CG GLU sing 110 n n 
CB HB2 GLU sing 111 n n 
CB HB3 GLU sing 112 n n 
CG CD GLU sing 113 n n 
CG HG2 GLU sing 114 n n 
CG HG3 GLU sing 115 n n 
CD OE1 GLU doub 116 n n 
CD OE2 GLU sing 117 n n 
OE2 HE2 GLU sing 118 n n 
OXT HXT GLU sing 119 n n 
#
_atom_sites.entry_id                     3IJX 
_atom_sites.fract_transf_matrix[1][1]    0.021095 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00614 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GLU B 1 400 400 GLU GLU . 
E 3 HCZ B 1 800 800 HCZ HCZ . 
F 4 ZN B 1 262 4 ZN ZN . 
G 2 GLU D 1 400 400 GLU GLU . 
H 3 HCZ D 1 800 800 HCZ HCZ . 
I 4 ZN D 1 1 1 ZN ZN . 
J 2 GLU H 1 400 400 GLU GLU . 
K 3 HCZ H 1 800 800 HCZ HCZ . 
L 4 ZN H 1 2 2 ZN ZN . 
M 4 ZN H 1 3 3 ZN ZN . 
N 4 ZN H 1 262 5 ZN ZN . 
O 5 HOH B 1 263 8 HOH HOH . 
O 5 HOH B 2 264 9 HOH HOH . 
O 5 HOH B 3 265 10 HOH HOH . 
O 5 HOH B 4 266 11 HOH HOH . 
O 5 HOH B 5 267 12 HOH HOH . 
O 5 HOH B 6 268 20 HOH HOH . 
O 5 HOH B 7 269 22 HOH HOH . 
O 5 HOH B 8 270 28 HOH HOH . 
O 5 HOH B 9 271 29 HOH HOH . 
O 5 HOH B 10 272 38 HOH HOH . 
O 5 HOH B 11 273 39 HOH HOH . 
O 5 HOH B 12 274 47 HOH HOH . 
O 5 HOH B 13 275 50 HOH HOH . 
O 5 HOH B 14 276 54 HOH HOH . 
O 5 HOH B 15 277 58 HOH HOH . 
O 5 HOH B 16 278 59 HOH HOH . 
O 5 HOH B 17 279 64 HOH HOH . 
O 5 HOH B 18 280 65 HOH HOH . 
O 5 HOH B 19 281 72 HOH HOH . 
O 5 HOH B 20 282 73 HOH HOH . 
O 5 HOH B 21 283 74 HOH HOH . 
O 5 HOH B 22 284 79 HOH HOH . 
O 5 HOH B 23 285 82 HOH HOH . 
O 5 HOH B 24 286 86 HOH HOH . 
O 5 HOH B 25 287 91 HOH HOH . 
O 5 HOH B 26 288 94 HOH HOH . 
O 5 HOH B 27 289 95 HOH HOH . 
O 5 HOH B 28 290 100 HOH HOH . 
O 5 HOH B 29 291 103 HOH HOH . 
O 5 HOH B 30 292 104 HOH HOH . 
O 5 HOH B 31 293 111 HOH HOH . 
O 5 HOH B 32 294 112 HOH HOH . 
O 5 HOH B 33 295 113 HOH HOH . 
O 5 HOH B 34 296 120 HOH HOH . 
O 5 HOH B 35 297 122 HOH HOH . 
O 5 HOH B 36 298 129 HOH HOH . 
O 5 HOH B 37 299 133 HOH HOH . 
O 5 HOH B 38 300 135 HOH HOH . 
O 5 HOH B 39 301 147 HOH HOH . 
O 5 HOH B 40 302 148 HOH HOH . 
O 5 HOH B 41 303 149 HOH HOH . 
O 5 HOH B 42 304 150 HOH HOH . 
O 5 HOH B 43 305 156 HOH HOH . 
O 5 HOH B 44 306 157 HOH HOH . 
O 5 HOH B 45 307 158 HOH HOH . 
O 5 HOH B 46 308 162 HOH HOH . 
O 5 HOH B 47 309 165 HOH HOH . 
O 5 HOH B 48 310 170 HOH HOH . 
O 5 HOH B 49 311 173 HOH HOH . 
P 5 HOH D 1 262 4 HOH HOH . 
P 5 HOH D 2 263 5 HOH HOH . 
P 5 HOH D 3 264 19 HOH HOH . 
P 5 HOH D 4 265 21 HOH HOH . 
P 5 HOH D 5 266 23 HOH HOH . 
P 5 HOH D 6 267 24 HOH HOH . 
P 5 HOH D 7 268 30 HOH HOH . 
P 5 HOH D 8 269 31 HOH HOH . 
P 5 HOH D 9 270 32 HOH HOH . 
P 5 HOH D 10 271 33 HOH HOH . 
P 5 HOH D 11 272 34 HOH HOH . 
P 5 HOH D 12 273 35 HOH HOH . 
P 5 HOH D 13 274 36 HOH HOH . 
P 5 HOH D 14 275 37 HOH HOH . 
P 5 HOH D 15 276 40 HOH HOH . 
P 5 HOH D 16 277 41 HOH HOH . 
P 5 HOH D 17 278 44 HOH HOH . 
P 5 HOH D 18 279 46 HOH HOH . 
P 5 HOH D 19 280 51 HOH HOH . 
P 5 HOH D 20 281 53 HOH HOH . 
P 5 HOH D 21 282 60 HOH HOH . 
P 5 HOH D 22 283 62 HOH HOH . 
P 5 HOH D 23 284 66 HOH HOH . 
P 5 HOH D 24 285 68 HOH HOH . 
P 5 HOH D 25 286 71 HOH HOH . 
P 5 HOH D 26 287 75 HOH HOH . 
P 5 HOH D 27 288 77 HOH HOH . 
P 5 HOH D 28 289 78 HOH HOH . 
P 5 HOH D 29 290 80 HOH HOH . 
P 5 HOH D 30 291 83 HOH HOH . 
P 5 HOH D 31 292 88 HOH HOH . 
P 5 HOH D 32 293 92 HOH HOH . 
P 5 HOH D 33 294 97 HOH HOH . 
P 5 HOH D 34 295 98 HOH HOH . 
P 5 HOH D 35 296 101 HOH HOH . 
P 5 HOH D 36 297 107 HOH HOH . 
P 5 HOH D 37 298 108 HOH HOH . 
P 5 HOH D 38 299 110 HOH HOH . 
P 5 HOH D 39 300 115 HOH HOH . 
P 5 HOH D 40 301 116 HOH HOH . 
P 5 HOH D 41 302 119 HOH HOH . 
P 5 HOH D 42 303 121 HOH HOH . 
P 5 HOH D 43 304 127 HOH HOH . 
P 5 HOH D 44 305 130 HOH HOH . 
P 5 HOH D 45 306 131 HOH HOH . 
P 5 HOH D 46 307 136 HOH HOH . 
P 5 HOH D 47 308 139 HOH HOH . 
P 5 HOH D 48 309 142 HOH HOH . 
P 5 HOH D 49 310 144 HOH HOH . 
P 5 HOH D 50 311 146 HOH HOH . 
P 5 HOH D 51 312 152 HOH HOH . 
P 5 HOH D 52 313 155 HOH HOH . 
P 5 HOH D 53 314 160 HOH HOH . 
P 5 HOH D 54 315 163 HOH HOH . 
P 5 HOH D 55 316 164 HOH HOH . 
P 5 HOH D 56 317 166 HOH HOH . 
P 5 HOH D 57 318 174 HOH HOH . 
Q 5 HOH H 1 263 2 HOH HOH . 
Q 5 HOH H 2 264 3 HOH HOH . 
Q 5 HOH H 3 265 6 HOH HOH . 
Q 5 HOH H 4 266 7 HOH HOH . 
Q 5 HOH H 5 267 13 HOH HOH . 
Q 5 HOH H 6 268 14 HOH HOH . 
Q 5 HOH H 7 269 15 HOH HOH . 
Q 5 HOH H 8 270 16 HOH HOH . 
Q 5 HOH H 9 271 17 HOH HOH . 
Q 5 HOH H 10 272 18 HOH HOH . 
Q 5 HOH H 11 273 25 HOH HOH . 
Q 5 HOH H 12 274 26 HOH HOH . 
Q 5 HOH H 13 275 27 HOH HOH . 
Q 5 HOH H 14 276 43 HOH HOH . 
Q 5 HOH H 15 277 45 HOH HOH . 
Q 5 HOH H 16 278 48 HOH HOH . 
Q 5 HOH H 17 279 49 HOH HOH . 
Q 5 HOH H 18 280 52 HOH HOH . 
Q 5 HOH H 19 281 55 HOH HOH . 
Q 5 HOH H 20 282 56 HOH HOH . 
Q 5 HOH H 21 283 57 HOH HOH . 
Q 5 HOH H 22 284 61 HOH HOH . 
Q 5 HOH H 23 285 63 HOH HOH . 
Q 5 HOH H 24 286 67 HOH HOH . 
Q 5 HOH H 25 287 69 HOH HOH . 
Q 5 HOH H 26 288 70 HOH HOH . 
Q 5 HOH H 27 289 76 HOH HOH . 
Q 5 HOH H 28 290 81 HOH HOH . 
Q 5 HOH H 29 291 84 HOH HOH . 
Q 5 HOH H 30 292 85 HOH HOH . 
Q 5 HOH H 31 293 87 HOH HOH . 
Q 5 HOH H 32 294 89 HOH HOH . 
Q 5 HOH H 33 295 93 HOH HOH . 
Q 5 HOH H 34 296 99 HOH HOH . 
Q 5 HOH H 35 297 102 HOH HOH . 
Q 5 HOH H 36 298 106 HOH HOH . 
Q 5 HOH H 37 299 109 HOH HOH . 
Q 5 HOH H 38 300 114 HOH HOH . 
Q 5 HOH H 39 301 117 HOH HOH . 
Q 5 HOH H 40 302 118 HOH HOH . 
Q 5 HOH H 41 303 123 HOH HOH . 
Q 5 HOH H 42 304 124 HOH HOH . 
Q 5 HOH H 43 305 126 HOH HOH . 
Q 5 HOH H 44 306 128 HOH HOH . 
Q 5 HOH H 45 307 134 HOH HOH . 
Q 5 HOH H 46 308 137 HOH HOH . 
Q 5 HOH H 47 309 138 HOH HOH . 
Q 5 HOH H 48 310 140 HOH HOH . 
Q 5 HOH H 49 311 141 HOH HOH . 
Q 5 HOH H 50 312 143 HOH HOH . 
Q 5 HOH H 51 313 145 HOH HOH . 
Q 5 HOH H 52 314 151 HOH HOH . 
Q 5 HOH H 53 315 153 HOH HOH . 
Q 5 HOH H 54 316 154 HOH HOH . 
Q 5 HOH H 55 317 159 HOH HOH . 
Q 5 HOH H 56 318 161 HOH HOH . 
Q 5 HOH H 57 319 167 HOH HOH . 
Q 5 HOH H 58 320 168 HOH HOH . 
Q 5 HOH H 59 321 169 HOH HOH . 
Q 5 HOH H 60 322 171 HOH HOH . 
Q 5 HOH H 61 323 172 HOH HOH . 
Q 5 HOH H 62 324 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLU . . . D 2 4.217 -38.106 -27.184 1 23.29 ? N GLU 400 B 1 
HETATM 2 C CA GLU . . . D 2 3.629 -37.728 -25.905 1 18.69 ? CA GLU 400 B 1 
HETATM 3 C C GLU . . . D 2 2.134 -37.991 -25.914 1 19.69 ? C GLU 400 B 1 
HETATM 4 O O GLU . . . D 2 1.426 -37.589 -25.003 1 23.4 ? O GLU 400 B 1 
HETATM 5 C CB GLU . . . D 2 3.9 -36.257 -25.598 1 18.3 ? CB GLU 400 B 1 
HETATM 6 C CG GLU . . . D 2 5.352 -35.833 -25.778 1 21.76 ? CG GLU 400 B 1 
HETATM 7 C CD GLU . . . D 2 6.202 -36.155 -24.566 1 23.43 ? CD GLU 400 B 1 
HETATM 8 O OE1 GLU . . . D 2 7.368 -36.604 -24.737 1 20.34 ? OE1 GLU 400 B 1 
HETATM 9 O OE2 GLU . . . D 2 5.681 -35.973 -23.442 1 22.05 ? OE2 GLU 400 B 1 
HETATM 10 O OXT GLU . . . D 2 1.589 -38.606 -26.824 1 20.03 ? OXT GLU 400 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#