data_3IJY # _model_server_result.job_id pzGVVV3SVlHUFNmNFoUdmA _model_server_result.datetime_utc '2025-02-20 08:35:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ijy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":214}' # _entry.id 3IJY # _exptl.entry_id 3IJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IJY _cell.length_a 45.91 _cell.length_b 128.54 _cell.length_c 155.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,J 1 1 C,D,F,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 KDO _pdbx_entity_branch_link.comp_id_2 KDA _pdbx_entity_branch_link.atom_id_1 C2 _pdbx_entity_branch_link.leaving_atom_id_1 O2 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O8 _pdbx_entity_branch_link.leaving_atom_id_2 HO8 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E KDA 1 E 1 KDA E 302 KDA 3 n E KDO 2 E 2 KDO E 303 KDO 3 n F KDA 1 F 1 KDA F 302 KDA 3 n F KDO 2 F 2 KDO F 303 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 94 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 139 A CYS 133 1_555 A SG CYS 199 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 153 B CYS 140 1_555 B SG CYS 208 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 94 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 139 C CYS 133 1_555 C SG CYS 199 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 98 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 153 D CYS 140 1_555 D SG CYS 208 D CYS 195 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 D SG CYS 153 D CYS 140 1_555 D SG CYS 208 D CYS 195 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 E O8 KDA . E KDA 1 1_555 E C2 KDO . E KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 F O8 KDA . F KDA 1 1_555 F C2 KDO . F KDO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 B OE2 GLU 61 B GLU 58 1_555 G MG MG . B MG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc2 D OE2 GLU 61 D GLU 58 1_555 H MG MG . D MG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3IJY _atom_sites.fract_transf_matrix[1][1] 0.021782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG B 1 214 1 MG MG . H 4 MG D 1 214 1 MG MG . I 5 HOH A 1 213 2 HOH HOH . I 5 HOH A 2 214 3 HOH HOH . I 5 HOH A 3 215 6 HOH HOH . I 5 HOH A 4 216 11 HOH HOH . I 5 HOH A 5 217 13 HOH HOH . I 5 HOH A 6 218 14 HOH HOH . I 5 HOH A 7 219 19 HOH HOH . I 5 HOH A 8 220 21 HOH HOH . I 5 HOH A 9 221 26 HOH HOH . I 5 HOH A 10 222 27 HOH HOH . I 5 HOH A 11 223 29 HOH HOH . I 5 HOH A 12 224 30 HOH HOH . I 5 HOH A 13 225 34 HOH HOH . I 5 HOH A 14 226 43 HOH HOH . I 5 HOH A 15 227 51 HOH HOH . I 5 HOH A 16 228 52 HOH HOH . I 5 HOH A 17 229 54 HOH HOH . I 5 HOH A 18 230 55 HOH HOH . J 5 HOH B 1 215 1 HOH HOH . J 5 HOH B 2 216 4 HOH HOH . J 5 HOH B 3 217 5 HOH HOH . J 5 HOH B 4 218 8 HOH HOH . J 5 HOH B 5 219 9 HOH HOH . J 5 HOH B 6 220 10 HOH HOH . J 5 HOH B 7 221 16 HOH HOH . J 5 HOH B 8 222 18 HOH HOH . J 5 HOH B 9 223 20 HOH HOH . J 5 HOH B 10 224 25 HOH HOH . J 5 HOH B 11 225 33 HOH HOH . J 5 HOH B 12 226 37 HOH HOH . J 5 HOH B 13 227 39 HOH HOH . J 5 HOH B 14 228 42 HOH HOH . J 5 HOH B 15 229 45 HOH HOH . J 5 HOH B 16 230 48 HOH HOH . J 5 HOH B 17 231 49 HOH HOH . J 5 HOH B 18 232 56 HOH HOH . J 5 HOH B 19 233 57 HOH HOH . J 5 HOH B 20 234 58 HOH HOH . K 5 HOH C 1 213 22 HOH HOH . K 5 HOH C 2 214 23 HOH HOH . K 5 HOH C 3 215 24 HOH HOH . K 5 HOH C 4 216 31 HOH HOH . K 5 HOH C 5 217 32 HOH HOH . K 5 HOH C 6 218 36 HOH HOH . K 5 HOH C 7 219 38 HOH HOH . K 5 HOH C 8 220 41 HOH HOH . K 5 HOH C 9 221 44 HOH HOH . K 5 HOH C 10 222 60 HOH HOH . L 5 HOH D 1 215 7 HOH HOH . L 5 HOH D 2 216 12 HOH HOH . L 5 HOH D 3 217 15 HOH HOH . L 5 HOH D 4 218 17 HOH HOH . L 5 HOH D 5 219 28 HOH HOH . L 5 HOH D 6 220 35 HOH HOH . L 5 HOH D 7 221 40 HOH HOH . L 5 HOH D 8 222 46 HOH HOH . L 5 HOH D 9 223 47 HOH HOH . L 5 HOH D 10 224 50 HOH HOH . L 5 HOH D 11 225 53 HOH HOH . L 5 HOH D 12 226 59 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x -16.01 _atom_site.Cartn_y -59.321 _atom_site.Cartn_z 5.705 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 214 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #