data_3IKA # _model_server_result.job_id HVRONBQTiQUWP-4ukOXYSg _model_server_result.datetime_utc '2024-11-30 03:00:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ika # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1797}' # _entry.id 3IKA # _exptl.entry_id 3IKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.973 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(5-chloro-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)oxy]phenyl}prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3IKA _cell.length_a 48.23 _cell.length_b 89.126 _cell.length_c 165.224 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3IKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,B,C,D,E 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAP _struct_conn.ptnr2_label_comp_id 0UN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 0UN _struct_conn.ptnr2_auth_seq_id 1797 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.822 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H27 Cl N6 O3' _chem_comp.formula_weight 494.973 _chem_comp.id 0UN _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(5-chloro-2-{[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino}pyrimidin-4-yl)oxy]phenyl}prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAR CAT 0UN sing 1 n n CAR NBN 0UN sing 2 n n CAB NBN 0UN sing 3 n n CAS NBN 0UN sing 4 n n CAS CAU 0UN sing 5 n n CAU NBO 0UN sing 6 n n NBO CAT 0UN sing 7 n n CBH NBO 0UN sing 8 n n CBH CAO 0UN sing 9 n y CBK CAO 0UN doub 10 n y CBK OBA 0UN sing 11 n n CAA OBA 0UN sing 12 n n CAK CBH 0UN doub 13 n y CAL CAK 0UN sing 14 n y CAL CBJ 0UN doub 15 n y CBJ CBK 0UN sing 16 n y NAZ CBJ 0UN sing 17 n n C2 NAZ 0UN sing 18 n n N3 C2 0UN doub 19 n y N1 C2 0UN sing 20 n y C6 N1 0UN doub 21 n y C5 C6 0UN sing 22 n y C5 C4 0UN doub 23 n y CL5 C5 0UN sing 24 n n C4 N3 0UN sing 25 n y OBB C4 0UN sing 26 n n OBB CBG 0UN sing 27 n n CBG CAN 0UN sing 28 n y CAN CBF 0UN doub 29 n y CAJ CBG 0UN doub 30 n y CAJ CAH 0UN sing 31 n y CAH CAI 0UN doub 32 n y CAI CBF 0UN sing 33 n y CBF NAY 0UN sing 34 n n NAY CBD 0UN sing 35 n n CBD CAQ 0UN sing 36 n n OAE CBD 0UN doub 37 n n CAQ CAP 0UN doub 38 n n CAT HAT 0UN sing 39 n n CAT HATA 0UN sing 40 n n CAR HAR 0UN sing 41 n n CAR HARA 0UN sing 42 n n CAB HAB 0UN sing 43 n n CAB HABA 0UN sing 44 n n CAB HABB 0UN sing 45 n n CAS HAS 0UN sing 46 n n CAS HASA 0UN sing 47 n n CAU HAU 0UN sing 48 n n CAU HAUA 0UN sing 49 n n CAO HAO 0UN sing 50 n n CAA HAA 0UN sing 51 n n CAA HAAA 0UN sing 52 n n CAA HAAB 0UN sing 53 n n CAK HAK 0UN sing 54 n n CAL HAL 0UN sing 55 n n NAZ HNAZ 0UN sing 56 n n C6 H6 0UN sing 57 n n CAN HAN 0UN sing 58 n n CAJ HAJ 0UN sing 59 n n CAH HAH 0UN sing 60 n n CAI HAI 0UN sing 61 n n NAY HNAY 0UN sing 62 n n CAQ HAQ 0UN sing 63 n n CAP HAP 0UN sing 64 n n CAP HAPA 0UN sing 65 n n # _atom_sites.entry_id 3IKA _atom_sites.fract_transf_matrix[1][1] 0.020734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0UN A 1 1797 1797 0UN 0UN . D 3 HOH A 1 2 2 HOH HOH . D 3 HOH A 2 3 3 HOH HOH . D 3 HOH A 3 11 11 HOH HOH . D 3 HOH A 4 12 12 HOH HOH . D 3 HOH A 5 13 13 HOH HOH . D 3 HOH A 6 14 14 HOH HOH . D 3 HOH A 7 15 15 HOH HOH . D 3 HOH A 8 16 16 HOH HOH . D 3 HOH A 9 19 19 HOH HOH . D 3 HOH A 10 21 21 HOH HOH . D 3 HOH A 11 22 22 HOH HOH . D 3 HOH A 12 25 25 HOH HOH . D 3 HOH A 13 26 26 HOH HOH . D 3 HOH A 14 27 27 HOH HOH . D 3 HOH A 15 38 38 HOH HOH . D 3 HOH A 16 41 41 HOH HOH . D 3 HOH A 17 42 42 HOH HOH . D 3 HOH A 18 47 47 HOH HOH . D 3 HOH A 19 51 51 HOH HOH . D 3 HOH A 20 52 52 HOH HOH . D 3 HOH A 21 54 54 HOH HOH . D 3 HOH A 22 55 55 HOH HOH . D 3 HOH A 23 57 57 HOH HOH . D 3 HOH A 24 58 58 HOH HOH . D 3 HOH A 25 59 59 HOH HOH . D 3 HOH A 26 60 60 HOH HOH . D 3 HOH A 27 62 62 HOH HOH . D 3 HOH A 28 63 63 HOH HOH . D 3 HOH A 29 68 68 HOH HOH . D 3 HOH A 30 72 72 HOH HOH . D 3 HOH A 31 74 74 HOH HOH . D 3 HOH A 32 75 75 HOH HOH . D 3 HOH A 33 76 76 HOH HOH . D 3 HOH A 34 77 77 HOH HOH . D 3 HOH A 35 78 78 HOH HOH . D 3 HOH A 36 79 79 HOH HOH . D 3 HOH A 37 83 83 HOH HOH . D 3 HOH A 38 85 85 HOH HOH . D 3 HOH A 39 87 87 HOH HOH . D 3 HOH A 40 91 91 HOH HOH . D 3 HOH A 41 95 95 HOH HOH . D 3 HOH A 42 97 97 HOH HOH . D 3 HOH A 43 99 99 HOH HOH . D 3 HOH A 44 100 100 HOH HOH . D 3 HOH A 45 101 101 HOH HOH . D 3 HOH A 46 102 102 HOH HOH . D 3 HOH A 47 103 103 HOH HOH . D 3 HOH A 48 104 104 HOH HOH . D 3 HOH A 49 105 105 HOH HOH . D 3 HOH A 50 106 106 HOH HOH . D 3 HOH A 51 108 108 HOH HOH . D 3 HOH A 52 109 109 HOH HOH . D 3 HOH A 53 112 112 HOH HOH . D 3 HOH A 54 114 114 HOH HOH . D 3 HOH A 55 115 115 HOH HOH . D 3 HOH A 56 119 119 HOH HOH . D 3 HOH A 57 120 120 HOH HOH . D 3 HOH A 58 123 123 HOH HOH . D 3 HOH A 59 125 125 HOH HOH . D 3 HOH A 60 126 126 HOH HOH . D 3 HOH A 61 127 127 HOH HOH . D 3 HOH A 62 129 129 HOH HOH . D 3 HOH A 63 131 131 HOH HOH . D 3 HOH A 64 132 132 HOH HOH . D 3 HOH A 65 134 134 HOH HOH . D 3 HOH A 66 136 136 HOH HOH . D 3 HOH A 67 138 138 HOH HOH . D 3 HOH A 68 139 139 HOH HOH . D 3 HOH A 69 144 144 HOH HOH . D 3 HOH A 70 147 147 HOH HOH . D 3 HOH A 71 148 148 HOH HOH . E 3 HOH B 1 1 1 HOH HOH . E 3 HOH B 2 4 4 HOH HOH . E 3 HOH B 3 5 5 HOH HOH . E 3 HOH B 4 6 6 HOH HOH . E 3 HOH B 5 7 7 HOH HOH . E 3 HOH B 6 8 8 HOH HOH . E 3 HOH B 7 9 9 HOH HOH . E 3 HOH B 8 10 10 HOH HOH . E 3 HOH B 9 17 17 HOH HOH . E 3 HOH B 10 18 18 HOH HOH . E 3 HOH B 11 20 20 HOH HOH . E 3 HOH B 12 23 23 HOH HOH . E 3 HOH B 13 24 24 HOH HOH . E 3 HOH B 14 28 28 HOH HOH . E 3 HOH B 15 29 29 HOH HOH . E 3 HOH B 16 30 30 HOH HOH . E 3 HOH B 17 31 31 HOH HOH . E 3 HOH B 18 32 32 HOH HOH . E 3 HOH B 19 33 33 HOH HOH . E 3 HOH B 20 34 34 HOH HOH . E 3 HOH B 21 35 35 HOH HOH . E 3 HOH B 22 36 36 HOH HOH . E 3 HOH B 23 37 37 HOH HOH . E 3 HOH B 24 39 39 HOH HOH . E 3 HOH B 25 40 40 HOH HOH . E 3 HOH B 26 43 43 HOH HOH . E 3 HOH B 27 44 44 HOH HOH . E 3 HOH B 28 45 45 HOH HOH . E 3 HOH B 29 46 46 HOH HOH . E 3 HOH B 30 48 48 HOH HOH . E 3 HOH B 31 49 49 HOH HOH . E 3 HOH B 32 50 50 HOH HOH . E 3 HOH B 33 53 53 HOH HOH . E 3 HOH B 34 56 56 HOH HOH . E 3 HOH B 35 61 61 HOH HOH . E 3 HOH B 36 64 64 HOH HOH . E 3 HOH B 37 65 65 HOH HOH . E 3 HOH B 38 66 66 HOH HOH . E 3 HOH B 39 67 67 HOH HOH . E 3 HOH B 40 69 69 HOH HOH . E 3 HOH B 41 70 70 HOH HOH . E 3 HOH B 42 71 71 HOH HOH . E 3 HOH B 43 73 73 HOH HOH . E 3 HOH B 44 80 80 HOH HOH . E 3 HOH B 45 81 81 HOH HOH . E 3 HOH B 46 82 82 HOH HOH . E 3 HOH B 47 84 84 HOH HOH . E 3 HOH B 48 86 86 HOH HOH . E 3 HOH B 49 88 88 HOH HOH . E 3 HOH B 50 89 89 HOH HOH . E 3 HOH B 51 90 90 HOH HOH . E 3 HOH B 52 92 92 HOH HOH . E 3 HOH B 53 93 93 HOH HOH . E 3 HOH B 54 94 94 HOH HOH . E 3 HOH B 55 96 96 HOH HOH . E 3 HOH B 56 98 98 HOH HOH . E 3 HOH B 57 107 107 HOH HOH . E 3 HOH B 58 110 110 HOH HOH . E 3 HOH B 59 111 111 HOH HOH . E 3 HOH B 60 113 113 HOH HOH . E 3 HOH B 61 116 116 HOH HOH . E 3 HOH B 62 117 117 HOH HOH . E 3 HOH B 63 118 118 HOH HOH . E 3 HOH B 64 121 121 HOH HOH . E 3 HOH B 65 122 122 HOH HOH . E 3 HOH B 66 124 124 HOH HOH . E 3 HOH B 67 128 128 HOH HOH . E 3 HOH B 68 130 130 HOH HOH . E 3 HOH B 69 133 133 HOH HOH . E 3 HOH B 70 135 135 HOH HOH . E 3 HOH B 71 137 137 HOH HOH . E 3 HOH B 72 140 140 HOH HOH . E 3 HOH B 73 141 141 HOH HOH . E 3 HOH B 74 142 142 HOH HOH . E 3 HOH B 75 143 143 HOH HOH . E 3 HOH B 76 145 145 HOH HOH . E 3 HOH B 77 146 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAT 0UN . . . C 2 -12.704 12.77 33.538 1 69.01 ? CAT 0UN 1797 A 1 HETATM 2 C CAR 0UN . . . C 2 -13.865 11.99 33.004 1 69.57 ? CAR 0UN 1797 A 1 HETATM 3 N NBN 0UN . . . C 2 -15.072 12.673 33.392 1 69.5 ? NBN 0UN 1797 A 1 HETATM 4 C CAB 0UN . . . C 2 -16.194 11.826 33.043 1 68.35 ? CAB 0UN 1797 A 1 HETATM 5 C CAS 0UN . . . C 2 -15.151 13.839 32.55 1 69.88 ? CAS 0UN 1797 A 1 HETATM 6 C CAU 0UN . . . C 2 -14.111 14.806 33.039 1 69.45 ? CAU 0UN 1797 A 1 HETATM 7 N NBO 0UN . . . C 2 -12.832 14.135 33.102 1 69.51 ? NBO 0UN 1797 A 1 HETATM 8 C CBH 0UN . . . C 2 -11.719 14.848 32.818 1 69.47 ? CBH 0UN 1797 A 1 HETATM 9 C CAO 0UN . . . C 2 -10.492 14.252 32.859 1 69.53 ? CAO 0UN 1797 A 1 HETATM 10 C CBK 0UN . . . C 2 -9.401 15.004 32.567 1 68.81 ? CBK 0UN 1797 A 1 HETATM 11 O OBA 0UN . . . C 2 -8.185 14.516 32.581 1 68.27 ? OBA 0UN 1797 A 1 HETATM 12 C CAA 0UN . . . C 2 -8.395 13.247 32.108 1 67.41 ? CAA 0UN 1797 A 1 HETATM 13 C CAK 0UN . . . C 2 -11.847 16.162 32.495 1 68.43 ? CAK 0UN 1797 A 1 HETATM 14 C CAL 0UN . . . C 2 -10.734 16.894 32.206 1 67.98 ? CAL 0UN 1797 A 1 HETATM 15 C CBJ 0UN . . . C 2 -9.529 16.287 32.251 1 68.81 ? CBJ 0UN 1797 A 1 HETATM 16 N NAZ 0UN . . . C 2 -8.447 16.91 31.994 1 70.35 ? NAZ 0UN 1797 A 1 HETATM 17 C C2 0UN . . . C 2 -8.526 17.93 31.203 1 71.32 ? C2 0UN 1797 A 1 HETATM 18 N N3 0UN . . . C 2 -9.697 18.264 30.677 1 71.84 ? N3 0UN 1797 A 1 HETATM 19 N N1 0UN . . . C 2 -7.415 18.588 30.961 1 69.63 ? N1 0UN 1797 A 1 HETATM 20 C C6 0UN . . . C 2 -7.423 19.613 30.183 1 69.15 ? C6 0UN 1797 A 1 HETATM 21 C C5 0UN . . . C 2 -8.602 19.983 29.628 1 69.98 ? C5 0UN 1797 A 1 HETATM 22 CL CL5 0UN . . . C 2 -8.62 21.321 28.61 1 72.79 ? CL5 0UN 1797 A 1 HETATM 23 C C4 0UN . . . C 2 -9.749 19.303 29.878 1 70.69 ? C4 0UN 1797 A 1 HETATM 24 O OBB 0UN . . . C 2 -10.874 19.712 29.307 1 70.17 ? OBB 0UN 1797 A 1 HETATM 25 C CBG 0UN . . . C 2 -12.003 19.159 29.752 1 70.69 ? CBG 0UN 1797 A 1 HETATM 26 C CAN 0UN . . . C 2 -12.464 19.479 31.001 1 71.69 ? CAN 0UN 1797 A 1 HETATM 27 C CAJ 0UN . . . C 2 -12.712 18.278 28.989 1 70.09 ? CAJ 0UN 1797 A 1 HETATM 28 C CAH 0UN . . . C 2 -13.873 17.724 29.474 1 69.66 ? CAH 0UN 1797 A 1 HETATM 29 C CAI 0UN . . . C 2 -14.337 18.047 30.733 1 70.4 ? CAI 0UN 1797 A 1 HETATM 30 C CBF 0UN . . . C 2 -13.622 18.934 31.5 1 71.5 ? CBF 0UN 1797 A 1 HETATM 31 N NAY 0UN . . . C 2 -13.985 19.298 32.702 1 72.65 ? NAY 0UN 1797 A 1 HETATM 32 C CBD 0UN . . . C 2 -15.166 19.037 33.207 1 73.98 ? CBD 0UN 1797 A 1 HETATM 33 O OAE 0UN . . . C 2 -16.041 18.431 32.617 1 76.56 ? OAE 0UN 1797 A 1 HETATM 34 C CAQ 0UN . . . C 2 -15.388 19.603 34.607 1 72.18 ? CAQ 0UN 1797 A 1 HETATM 35 C CAP 0UN . . . C 2 -15.545 18.529 35.678 1 70.09 ? CAP 0UN 1797 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #